Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005770

Physical Location & Seq

Genomic Coordinates Forward (+)

20819400 .. 20823153

Gene Structure 3754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18350.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGCGGCGGCGGCGAGAATAAACTTCTTCTTAAACCACACAAATCCCCTCAACTACAAAGCCGCCGCCCATCTCAGAACTGACCTCCGCTTCCAACGAAGACGACCCAAAACTACGTCGTTCTGCACCCGCGCCTCCGCTGCTCCCCTCCACGACGAATCCTCTGCCGCCGGAGGTAGTGATCCTTTTGTCCTCACCACTCCGCTCTATTACGTGAACGCCCCTCCCCATTTGGGCAGCGCTTACACCACCATTGCCGCCGACGCCATTGCTCGATTTCAGCGGCTGTTGGGTAAGAAAGTCATCTTCGTCACCGGAACTGACGAGCACGGTGAGAAGATTGCGGCGGCCGCCGCTTCTAATGCGTCCACTCCAGCTCAACACTGCGATCTCATTTCACAATCTTACATTTCGCTCTGGAAACAGTTAGATATATCGTATGACAGGTTCATTCGGACTACTGACCCCAAGCATGAGGCAATTGTCAAGGAATTTTACTCCAGAGTTCTTGCCAATGGAGACATTTACAGGGCTGACTACGAGGGACTTTATTGTGTCAACTGTGAAGAGTATAAGGATGAGAAAGAACTACTTGAGAACAACTGTTGTCCTACGCACCTAAAGCCATGTGTTGCACGAAAAGAAGACAATTACTTCTTTGCATTGTCCAAGTATCAAAAATCGTTGGAAGAAACTTTGGCAACAAAACCTAATATTGTACAGCCTTCATTCCGTCTTAATGAGGTTCAAGGTTGGGTTAAAAATGGCCTAAGAGACTTTTCCATTTCTCGAGCATTAGTGGATTGGGGCATCCCTGTTCCTAATGACAGCAAGCAAACAATATACGTTTGGTTTGATGCTTTATTGGGTTATATATCAGCATTATCAGAGGATACGGAGCAACCCGATTTGGAAAGAGCCATTTCATCAGGGTGGCCTGCCTCACTACACTTGATTGGCAAGGATATTTTACGTTTCCATGCAGTTTACTGGCCAGCTATGCTAATGTCTGCGGGACTAGGTCTTCCTAAGATGGTGTTTGGCCATGGATTCTTGACAAAGGATGGTATGAAGATGGGGAAGTCGCTTGGGAATACGATTGAACCAAATGAGTTGGTTCAGAAATTTGGGTCTGATGCAGTCAGGTACTTCTTCCTAAGAGAGGTGGAATTTGGAAATGATGGGGACTATTCAGAAGAACGTTTCATCAATATTGTCAATGCTCACCTTGCAAATTCAATTGGAAACCTGCTTAACCGTACTCTGGGACTTATTAAGAAAAACTGCCAATCAACTTTGCCTGTTGATTCAAGTATTGCAGTTGAAGGAACTACGTTCAAGGACACAGTGGAGAAATTGGTTGAAAAAGCTCAGGTTCACTATGGAGACCTCTCGCTGTCATCAGCTTGTGAGGCTGTGCTAGAGATCGATCCATACTTGAAATTTATACATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006431 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g

Protein Analysis

486

Amino Acids

54.16

Weight (kDa)

6.29

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55400 AT3G55400
fragaria_vesca	FvH4_6g24170 FvH4_6g24170 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210
malus_domestica	MD01G1125100.v1.1 MD07G1194800.v1.1
prunus_persica	Prupe.2G232400_v2.0.a1 Prupe.2G232400_v2.0.a1
pyrus_communis	pycom01g15130 pycom07g18350 pycom07g18360
rosa_chinensis	RchiOBHm_Chr3g0482991 RchiOBHm_Chr3g0483011
rosa_laevigata	RLG00000023307 RLG00000023309
rosa_multiflora	Rmu_sc0003351.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398740
rosa_rugosa	Rorug03G0202800
rosa_samantha	Rh3AG251600 Rh3BG288100 Rh3CG285600 Rh3DG281300
rosa_wichuraiana	Rw3G022730 Rw3G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1257
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	132
AclI	AACGTT	1 cut(s)	1201
AclWI	GGATC	2 cut(s)	176, 1424
AcoI	YGGCCR	3 cut(s)	348, 992, 1042
AcsI	RAATTY	5 cut(s)	491, 1124, 1169, 1234, 1442
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	720, 1148, 1261
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	3 cut(s)	233, 1162, 1264
AgsI	TTSAA	8 cut(s)	749, 1103, 1239, 1311, 1325, 1339, 1364, 1441
AluBI	AGCT	4 cut(s)	377, 998, 1370, 1406
AluI	AGCT	4 cut(s)	377, 998, 1370, 1406
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	3 cut(s)	513, 768, 1380
AlwI	GGATC	2 cut(s)	176, 1424
AlwNI	CAGNNNCTG	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	789
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	5 cut(s)	348, 766, 935, 992, 1042
ApeKI	GCWGC	2 cut(s)	140, 237
ApoI	RAATTY	5 cut(s)	491, 1124, 1169, 1234, 1442
AspLEI	GCGC	2 cut(s)	134, 242
AsuHPI	GGTGA	4 cut(s)	187, 304, 344, 1217
AvaI	CYCGRG	1 cut(s)	789
BalI	TGGCCA	2 cut(s)	994, 1044
BbsI	GAAGAC	3 cut(s)	106, 651, 1016
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	127, 249
BccI	CCATC	5 cut(s)	78, 1027, 1058, 1069, 1175
BcgI	CGANNNNNNTGC	4 cut(s)	146, 180, 251, 285
BciVI	GTATCC	1 cut(s)	886
BcoDI	GTCTC	3 cut(s)	513, 768, 1380
BfaI	CTAG	2 cut(s)	1019, 1421
BfoI	RGCGCY	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	1257
BfuI	GTATCC	1 cut(s)	886
BmeT110I	CYCGRG	1 cut(s)	789
BmsI	GCATC	3 cut(s)	819, 847, 1126
BpiI	GAAGAC	3 cut(s)	106, 651, 1016
BpmI	CTGGAG	2 cut(s)	357, 484
Bpu10I	CCTNAGC	1 cut(s)	1371
BpuEI	CTTGAG	1 cut(s)	614
Bsa29I	ATCGAT	1 cut(s)	1428
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1380
BsaJI	CCNNGG	1 cut(s)	1045
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 1162, 1264
Bse1I	ACTGG	1 cut(s)	995
Bse3DI	GCAATG	2 cut(s)	252, 267
BseCI	ATCGAT	1 cut(s)	1428
BseDI	CCNNGG	1 cut(s)	1045
BseGI	GGATG	3 cut(s)	583, 810, 1069
BseLI	CCNNNNNNNGG	3 cut(s)	233, 1162, 1264
BseMI	GCAATG	2 cut(s)	252, 267
BseMII	CTCAG	2 cut(s)	88, 1385
BseNI	ACTGG	1 cut(s)	995
BseX3I	CGGCCG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	127, 249
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	5 cut(s)	350, 768, 937, 994, 1044
BshVI	ATCGAT	1 cut(s)	1428
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	171, 315
BslFI	GGGAC	4 cut(s)	558, 1029, 1199, 1281
BslI	CCNNNNNNNGG	3 cut(s)	233, 1162, 1264
BsmAI	GTCTC	3 cut(s)	513, 768, 1380
BsmFI	GGGAC	4 cut(s)	558, 1029, 1199, 1281
BsnI	GGCC	5 cut(s)	350, 768, 937, 994, 1044
Bso31I	GGTCTC	1 cut(s)	1380
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	4 cut(s)	181, 388, 1425, 1429
Bsp19I	CCATGG	1 cut(s)	1045
BspANI	GGCC	5 cut(s)	350, 768, 937, 994, 1044
BspCNI	CTCAG	2 cut(s)	87, 1384
BspDI	ATCGAT	1 cut(s)	1428
BspFNI	CGCG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	1257
BspPI	GGATC	2 cut(s)	176, 1424
BspTNI	GGTCTC	1 cut(s)	1380
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	252, 267
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	995
BssECI	CCNNGG	1 cut(s)	1045
BssMI	GATC	4 cut(s)	181, 388, 1425, 1429
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	1045
Bst4CI	ACNGT	6 cut(s)	332, 426, 563, 605, 1259, 1348
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	833, 939, 996
BstDEI	CTNAG	5 cut(s)	74, 770, 1029, 1157, 1371
BstDSI	CCRYGG	1 cut(s)	1045
BstENI	CCTNNNNNAGG	1 cut(s)	1160
BstF5I	GGATG	3 cut(s)	583, 810, 1069
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	134, 242
BstKTI	GATC	4 cut(s)	184, 391, 1428, 1432
BstMAI	GTCTC	3 cut(s)	513, 768, 1380
BstMBI	GATC	4 cut(s)	181, 388, 1425, 1429
BstMCI	CGRYCG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	127, 249
BstV2I	GAAGAC	3 cut(s)	106, 651, 1016
BstZI	CGGCCG	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	1428
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	5 cut(s)	350, 768, 937, 994, 1044
BsuTUI	ATCGAT	1 cut(s)	1428
BtgI	CCRYGG	1 cut(s)	1045
BtsCI	GGATG	3 cut(s)	583, 810, 1069
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	382, 1353
BveI	ACCTGC	1 cut(s)	1257
Cac8I	GCNNGC	3 cut(s)	833, 939, 996
CaiI	CAGNNNCTG	1 cut(s)	286
CciNI	GCGGCCGC	1 cut(s)	348
CfoI	GCGC	2 cut(s)	134, 242
ClaI	ATCGAT	1 cut(s)	1428
CseI	GACGC	2 cut(s)	272, 354
Csp6I	GTAC	3 cut(s)	719, 1147, 1260
CviAII	CATG	5 cut(s)	473, 627, 980, 1046, 1451
CviQI	GTAC	3 cut(s)	719, 1147, 1260
DdeI	CTNAG	5 cut(s)	74, 770, 1029, 1157, 1371
DpnI	GATC	4 cut(s)	183, 390, 1427, 1431
DpnII	GATC	4 cut(s)	181, 388, 1425, 1429
EaeI	YGGCCR	3 cut(s)	348, 992, 1042
EagI	CGGCCG	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EclXI	CGGCCG	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	1045
Eco31I	GGTCTC	1 cut(s)	1380
Eco47III	AGCGCT	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	789
EcoNI	CCTNNNNNAGG	1 cut(s)	1160
EcoT14I	CCWWGG	1 cut(s)	1045
ErhI	CCWWGG	1 cut(s)	1045
FaeI	CATG	5 cut(s)	476, 630, 983, 1049, 1454
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	4 cut(s)	558, 1029, 1199, 1281
FatI	CATG	5 cut(s)	472, 626, 979, 1045, 1450
FauI	CCCGC	2 cut(s)	137, 1006
FokI	GGATG	3 cut(s)	590, 797, 1076
FspBI	CTAG	2 cut(s)	1019, 1421
GlaI	GCGC	2 cut(s)	133, 241
GsuI	CTGGAG	2 cut(s)	357, 484
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	5 cut(s)	350, 768, 937, 994, 1044
HapII	CCGG	2 cut(s)	171, 315
HgaI	GACGC	2 cut(s)	272, 354
HhaI	GCGC	2 cut(s)	134, 242
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	476, 630, 983, 1049, 1454
Hin6I	GCGC	2 cut(s)	132, 240
HinP1I	GCGC	2 cut(s)	132, 240
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	158, 1050, 1307
HpaII	CCGG	2 cut(s)	171, 315
HphI	GGTGA	4 cut(s)	187, 304, 344, 1217
Hpy166II	GTNNAC	5 cut(s)	217, 369, 559, 988, 1378
Hpy188I	TCNGA	6 cut(s)	77, 456, 889, 1122, 1135, 1195
Hpy188III	TCNNGA	4 cut(s)	418, 501, 789, 1054
Hpy8I	GTNNAC	5 cut(s)	217, 369, 559, 988, 1378
Hpy99I	CGWCG	3 cut(s)	121, 158, 266
HpyAV	CCTTC	2 cut(s)	735, 1319
HpyCH4III	ACNGT	6 cut(s)	332, 426, 563, 605, 1259, 1348
HpyCH4IV	ACGT	6 cut(s)	116, 213, 846, 973, 1201, 1334
HpyCH4V	TGCA	7 cut(s)	126, 635, 662, 983, 1139, 1232, 1319
HpyF3I	CTNAG	5 cut(s)	74, 770, 1029, 1157, 1371
HpySE526I	ACGT	6 cut(s)	116, 213, 846, 973, 1201, 1334
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	476, 630, 983, 1049, 1454
HspAI	GCGC	2 cut(s)	132, 240
Kzo9I	GATC	4 cut(s)	181, 388, 1425, 1429
LmnI	GCTCC	2 cut(s)	148, 898
Lsp1109I	GCAGC	2 cut(s)	127, 249
LweI	GCATC	3 cut(s)	819, 847, 1126
MaeI	CTAG	2 cut(s)	1019, 1421
MaeII	ACGT	6 cut(s)	116, 213, 846, 973, 1201, 1334
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	183, 390, 1427, 1431
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	4 cut(s)	181, 388, 1425, 1429
MfeI	CAATTG	2 cut(s)	480, 1239
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	2 cut(s)	994, 1044
MluCI	AATT	9 cut(s)	480, 491, 649, 1124, 1169, 1234, 1239, 1355, 1442
MluNI	TGGCCA	2 cut(s)	994, 1044
MmeI	TCCRAC	2 cut(s)	118, 666
Mox20I	TGGCCA	2 cut(s)	994, 1044
MscI	TGGCCA	2 cut(s)	994, 1044
MseI	TTAA	5 cut(s)	32, 738, 759, 1254, 1275
MslI	CAYNNNNRTG	1 cut(s)	931
Msp20I	TGGCCA	2 cut(s)	994, 1044
MspA1I	CMGCKG	2 cut(s)	140, 283
MspI	CCGG	2 cut(s)	171, 315
MunI	CAATTG	2 cut(s)	480, 1239
MvnI	CGCG	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	1045
NdeII	GATC	4 cut(s)	181, 388, 1425, 1429
NlaIII	CATG	5 cut(s)	476, 630, 983, 1049, 1454
NmuCI	GTSAC	1 cut(s)	310
NotI	GCGGCCGC	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	158, 1050, 1307
PflFI	GACNNNGTC	1 cut(s)	1020
Ppu21I	YACGTR	1 cut(s)	214
Psp1406I	AACGTT	1 cut(s)	1201
PsrI	GAACNNNNNNTAC	2 cut(s)	431, 463
PstNI	CAGNNNCTG	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	1020
RsaI	GTAC	3 cut(s)	720, 1148, 1261
RsaNI	GTAC	3 cut(s)	719, 1147, 1260
RseI	CAYNNNNRTG	1 cut(s)	931
SaqAI	TTAA	5 cut(s)	32, 738, 759, 1254, 1275
Sau3AI	GATC	4 cut(s)	181, 388, 1425, 1429
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	3 cut(s)	819, 847, 1126
Sfr274I	CTCGAG	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	931
SmlI	CTYRAG	2 cut(s)	593, 789
SmoI	CTYRAG	2 cut(s)	593, 789
Sse9I	AATT	9 cut(s)	480, 491, 649, 1124, 1169, 1234, 1239, 1355, 1442
SspI	AATATT	2 cut(s)	715, 1213
SspMI	CTAG	2 cut(s)	1019, 1421
StyI	CCWWGG	1 cut(s)	1045
TaaI	ACNGT	6 cut(s)	332, 426, 563, 605, 1259, 1348
TaiI	ACGT	6 cut(s)	119, 216, 849, 976, 1204, 1337
TaqI	TCGA	3 cut(s)	274, 790, 1428
TasI	AATT	9 cut(s)	480, 491, 649, 1124, 1169, 1234, 1239, 1355, 1442
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	3 cut(s)	158, 1050, 1307
Tru1I	TTAA	5 cut(s)	32, 738, 759, 1254, 1275
Tru9I	TTAA	5 cut(s)	32, 738, 759, 1254, 1275
TscAI	CASTG	2 cut(s)	389, 1353
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	140, 237
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	439, 717, 915, 1085, 1195
TspGWI	ACGGA	2 cut(s)	722, 911
TspRI	CASTG	2 cut(s)	389, 1353
Tth111I	GACNNNGTC	1 cut(s)	1020
XagI	CCTNNNNNAGG	1 cut(s)	1160
XapI	RAATTY	5 cut(s)	491, 1124, 1169, 1234, 1442
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	2 cut(s)	1019, 1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.