Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Forward (+)

18750451 .. 18753879

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGCAGTTGGGGAAGACAGCCACAGCTGCAGCAAGGTGATACTTATTATCGACGAGGTTCCGGGACTAAATTTCATAACAGAAAGCCTCCGCATCATCAACATGATAGTTGGCAGTTCGGTGTGCCTGCCTGGGAAAAGAAATTTTGTTCGTCAGTGGGCTCAGTTCCATGGAAAAAGCTCTTAGATACAAAGAGGTGTATGTATCTGTATGAAAATATTGTTCAATGGAATGATTCTGCAGGTGAAGAGGCATTCCAAAATGCAAAAAACCGTTTTTGGGCAAAGATTAACGATATTCCTTGTGATATATCATTGCCTGATCCTGATATCTATATTGATGAAATAGACTGGAACTCCAGCATTGATCCTGAACTGATTTTGGACTTGGAAAGGGAACCCAAACCCTCCGACGAAACCAAAGGAGAGGGTGTTCTTGTTGGTGATCCATTCCTTCTGAATCAGCCTATTGCATGCACCGGATGGGGGGATGCTGAGGAGGACTTCAAAAAAGATGCCAGTGGAGATGCGGAACACTGGGGTCCTGGAGGGAAGGCAGATGATAAAGAGAACCCTTGGGGACTTGTCTCTGATCAGAATAAAGAAGCGATAGGAGGATGGGGCAGTAGTTGGAATGAGCCTGTATCTGATCAGAATAAAGAAGCGATTGGAGGATGGGGCAGTAGTTGGAATGTGCCCGTCTCTGATCAGAATAAAGAAGCGATAGCAGGATGGGGCAATAGTTGGGATGAGCGTGTCTCTGATCAGAATAAAGAAGCGATAGGAGGATGGGGCAGCAAGTGGGAGAACAACAATAACTTAAGTGAATGGAATACCAATGTTGATCATTCTCATAAGAATATGGAGTGGAAAAGGGCTGATCGTGTATGTTGGGGAAACAATGATGCAAGGAACGGAGCGGATAATAGTGGTGCAAGTTGGTACAACTCAAGATATAGGACCTCCAGATTTCAGGGTGATTATCGTCAGAACGATCGAGGGTGGAGGAACGGAGGAAGAAGAAATAGGGTCAATGCTGGTTATCAAAGCAGTGGAACTTGGAATAATTGTCAGCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.98

Weight (kDa)

5.17

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	920
AciI	CCGC	3 cut(s)	92, 530, 920
AclWI	GGATC	3 cut(s)	317, 362, 440
AcsI	RAATTY	2 cut(s)	71, 143
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	2 cut(s)	280, 486
AflII	CTTAAG	1 cut(s)	820
AgsI	TTSAA	2 cut(s)	227, 508
AjnI	CCWGG	2 cut(s)	131, 544
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	2 cut(s)	28, 181
AluI	AGCT	2 cut(s)	28, 181
Alw26I	GTCTC	3 cut(s)	592, 706, 763
AlwI	GGATC	3 cut(s)	317, 362, 440
ApeKI	GCWGC	3 cut(s)	28, 31, 795
ApoI	RAATTY	2 cut(s)	71, 143
AspS9I	GGNCC	2 cut(s)	542, 960
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	4 cut(s)	50, 257, 455, 989
AvaII	GGWCC	2 cut(s)	542, 960
BaeGI	GKGCMC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	15, 43, 807
BccI	CCATC	5 cut(s)	477, 612, 669, 726, 783
BciT130I	CCWGG	2 cut(s)	133, 546
BclI	TGATCA	5 cut(s)	592, 649, 706, 763, 844
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	592, 706, 763
BfmI	CTRYAG	2 cut(s)	29, 240
BfrI	CTTAAG	1 cut(s)	820
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	29, 32, 796
BlsI	GCNGC	3 cut(s)	30, 33, 797
Bme1390I	CCNGG	3 cut(s)	64, 133, 546
Bme18I	GGWCC	2 cut(s)	542, 960
BmgT120I	GGNCC	2 cut(s)	542, 960
BmiI	GGNNCC	3 cut(s)	61, 399, 543
BmrFI	CCNGG	3 cut(s)	64, 133, 546
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	5 cut(s)	103, 481, 505, 517, 895
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
BpmI	CTGGAG	3 cut(s)	343, 567, 949
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	934
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	132, 170, 575
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 486
Bse1I	ACTGG	3 cut(s)	356, 519, 542
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	133, 546
BseDI	CCNNGG	3 cut(s)	132, 170, 575
BseGI	GGATG	7 cut(s)	488, 496, 623, 680, 737, 754, 794
BseLI	CCNNNNNNNGG	2 cut(s)	280, 486
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	177, 486
BseNI	ACTGG	3 cut(s)	356, 519, 542
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	15, 43, 807
Bsh1285I	CGRYCG	1 cut(s)	997
BsiEI	CGRYCG	1 cut(s)	997
BsiSI	CCGG	2 cut(s)	63, 480
BslFI	GGGAC	2 cut(s)	79, 594
BslI	CCNNNNNNNGG	2 cut(s)	280, 486
BsmAI	GTCTC	3 cut(s)	592, 706, 763
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	2 cut(s)	79, 594
BsmI	GAATGC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	164, 699
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	3 cut(s)	92, 530, 920
BspCNI	CTCAG	2 cut(s)	176, 487
BspLI	GGNNCC	3 cut(s)	61, 399, 543
BspMAI	CTGCAG	2 cut(s)	33, 244
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	317, 362, 440
BspTI	CTTAAG	1 cut(s)	820
BsrBI	CCGCTC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	356, 519, 542
BssECI	CCNNGG	3 cut(s)	132, 170, 575
BssT1I	CCWWGG	2 cut(s)	170, 575
Bst2UI	CCWGG	2 cut(s)	133, 546
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	129, 475
BstDEI	CTNAG	3 cut(s)	163, 184, 495
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	7 cut(s)	488, 496, 623, 680, 737, 754, 794
BstMAI	GTCTC	3 cut(s)	592, 706, 763
BstMCI	CGRYCG	1 cut(s)	997
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	133, 546
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	3 cut(s)	62, 131, 544
BstSFI	CTRYAG	2 cut(s)	29, 240
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	15, 43, 807
BstV2I	GAAGAC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	7 cut(s)	488, 496, 623, 680, 737, 754, 794
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	4 cut(s)	162, 526, 535, 1057
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	129, 475
Cfr13I	GGNCC	2 cut(s)	542, 960
Csp6I	GTAC	1 cut(s)	943
CviAII	CATG	3 cut(s)	104, 171, 474
CviJI	RGCY	8 cut(s)	22, 28, 88, 162, 181, 466, 640, 878
CviKI_1	RGCY	8 cut(s)	22, 28, 88, 162, 181, 466, 640, 878
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	3 cut(s)	163, 184, 495
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	170, 575
Eco24I	GRGCYC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	542, 960
EcoO109I	RGGNCCY	2 cut(s)	542, 960
EcoRII	CCWGG	2 cut(s)	131, 544
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	170, 575
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	170, 575
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	3 cut(s)	107, 174, 477
FaqI	GGGAC	2 cut(s)	79, 594
FatI	CATG	3 cut(s)	103, 170, 473
FbaI	TGATCA	5 cut(s)	592, 649, 706, 763, 844
Fnu4HI	GCNGC	3 cut(s)	29, 32, 796
FokI	GGATG	7 cut(s)	495, 503, 630, 687, 744, 761, 801
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	29, 32, 796
GluI	GCNGC	3 cut(s)	29, 32, 796
GsuI	CTGGAG	3 cut(s)	343, 567, 949
HapII	CCGG	2 cut(s)	63, 480
Hin1II	CATG	3 cut(s)	107, 174, 477
HinfI	GANTC	2 cut(s)	236, 460
HpaII	CCGG	2 cut(s)	63, 480
HphI	GGTGA	4 cut(s)	50, 257, 455, 989
Hpy188III	TCNNGA	4 cut(s)	326, 371, 951, 966
Hpy99I	CGWCG	2 cut(s)	57, 416
HpyAV	CCTTC	2 cut(s)	464, 547
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	7 cut(s)	31, 242, 266, 473, 477, 908, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	163, 184, 495
Hsp92II	CATG	3 cut(s)	107, 174, 477
Ksp22I	TGATCA	5 cut(s)	592, 649, 706, 763, 844
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	3 cut(s)	15, 43, 807
LweI	GCATC	5 cut(s)	103, 481, 505, 517, 895
MbiI	CCGCTC	1 cut(s)	920
MboII	GAAGA	4 cut(s)	27, 260, 1029, 1032
MhlI	GDGCHC	2 cut(s)	164, 699
MluCI	AATT	3 cut(s)	71, 143, 1066
MmeI	TCCRAC	3 cut(s)	435, 611, 668
MseI	TTAA	2 cut(s)	291, 821
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	28
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	2 cut(s)	63, 480
MspR9I	CCNGG	3 cut(s)	64, 133, 546
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	133, 546
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	107, 174, 477
NlaIV	GGNNCC	3 cut(s)	61, 399, 543
NspI	RCATGY	1 cut(s)	477
PaeI	GCATGC	1 cut(s)	477
PaqCI	CACCTGC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	236, 460
PfoI	TCCNGGA	2 cut(s)	62, 544
PkrI	GCNGC	3 cut(s)	30, 33, 797
Ple19I	CGATCG	1 cut(s)	997
PpuMI	RGGWCCY	2 cut(s)	542, 960
Psp5II	RGGWCCY	2 cut(s)	542, 960
Psp6I	CCWGG	2 cut(s)	131, 544
PspGI	CCWGG	2 cut(s)	131, 544
PspN4I	GGNNCC	3 cut(s)	61, 399, 543
PspPI	GGNCC	2 cut(s)	542, 960
PspPPI	RGGWCCY	2 cut(s)	542, 960
PstI	CTGCAG	2 cut(s)	33, 244
PvuI	CGATCG	1 cut(s)	997
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	291, 821
SatI	GCNGC	3 cut(s)	29, 32, 796
Sau96I	GGNCC	2 cut(s)	542, 960
ScrFI	CCNGG	3 cut(s)	64, 133, 546
SduI	GDGCHC	2 cut(s)	164, 699
SetI	ASST	7 cut(s)	30, 40, 61, 183, 200, 247, 965
SfaNI	GCATC	5 cut(s)	103, 481, 505, 517, 895
SfcI	CTRYAG	2 cut(s)	29, 240
SinI	GGWCC	2 cut(s)	542, 960
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	820, 949
SmoI	CTYRAG	2 cut(s)	820, 949
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	3 cut(s)	71, 143, 1066
SsiI	CCGC	3 cut(s)	92, 530, 920
SspI	AATATT	1 cut(s)	220
StyD4I	CCNGG	3 cut(s)	62, 131, 544
StyI	CCWWGG	2 cut(s)	170, 575
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	52, 997
TasI	AATT	3 cut(s)	71, 143, 1066
TfiI	GAWTC	2 cut(s)	236, 460
Tru1I	TTAA	2 cut(s)	291, 821
Tru9I	TTAA	2 cut(s)	291, 821
TscAI	CASTG	4 cut(s)	162, 526, 542, 1057
TseI	GCWGC	3 cut(s)	28, 31, 795
TspDTI	ATGAA	3 cut(s)	65, 228, 357
TspGWI	ACGGA	2 cut(s)	930, 1026
TspRI	CASTG	4 cut(s)	162, 526, 542, 1057
Vha464I	CTTAAG	1 cut(s)	820
VpaK11BI	GGWCC	2 cut(s)	542, 960
XapI	RAATTY	2 cut(s)	71, 143
XceI	RCATGY	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.