Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Forward (+)

29978121 .. 29983035

Gene Structure 4915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGCAGTTGGGGAAGACAGCAACAACAGCAGCGGGGTGATACTTATCATCAACGAGGTTCCTGGACTAAATTTCAGAACAGGAAGCCACCGCAACATCATGATAGTTGGCAGTTCAATGTGCCTTCCTGGGAAAAGAAGTTTTGTACGTCGGTGGGCTCAGTTCCATGGAAAAAGCTCTTAGATACAAAGAGGTGTATGTATCTTTATGAAAATATTGTTCAATGGAATGATTCTGCAGGTGAAGAGGCATTCCAAAATGCAAAAAACCGTTTTTGGGCAAAGATTAACGGTCTTCCCTGCGACATATCGTTGCCTGATCCTGATATTTATATTGATGAAATAGACTGGAACTCCAGCATTGATCCTGAACTGATTTTGGACTTGGAAAGGGAACCTAAACCCTCCGATGATGAAACCAAAGGAGAGGGTGTTATTGTTGGTCATCCACTCCTTTTGAATCAGTCATTTTCATGCACTGGATGGGGGGATGCTGAGGATGACTTCATAAAAGATGCCAGCAGAGATGCTGAACACTGGGGTCCTGGAGGGAATGCAGATAATAAAGAAAATCCTTGGGAACCTGTCTCCGATCAGAATAAAGAAGCAGTAGGAGGATGGGGAAGTGGTTGGAATAAGTGGGAGAATAATGATAACACAAGTGATTGGAATACCCATTTTGATGATCCTCATAAGAATATGGATTGGAAAAGAGCTGATCGAGTTTATTGGGGAAATGTTGATGCAAGGAACAGAGCGAATAATGGTGGTGCAAGTTGGAACAACTCAAGAAATAGGACCTCGAGATTTCAGGGTGATTACTATCAGAAAGATCGAGGGTGGAGGAATGGAGGAAGAAGGAATAGAGATAATGTTGGTTATCAACGCAGTGGAACTTGGAATGATTGTCAGCAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

35.58

Weight (kDa)

5.45

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	230
AciI	CCGC	2 cut(s)	34, 92
AclWI	GGATC	3 cut(s)	314, 359, 680
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	118, 224, 460
AjnI	CCWGG	3 cut(s)	62, 128, 544
AluBI	AGCT	2 cut(s)	178, 716
AluI	AGCT	2 cut(s)	178, 716
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	3 cut(s)	314, 359, 680
Ama87I	CYCGRG	1 cut(s)	802
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	542, 798
AsuHPI	GGTGA	3 cut(s)	50, 254, 827
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	2 cut(s)	542, 798
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	22, 287
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	477, 612
BciT130I	CCWGG	3 cut(s)	64, 130, 546
BcoDI	GTCTC	1 cut(s)	592
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	64, 130, 546
Bme18I	GGWCC	2 cut(s)	542, 798
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	2 cut(s)	542, 798
BmiI	GGNNCC	4 cut(s)	61, 396, 543, 582
BmrFI	CCNGG	3 cut(s)	64, 130, 546
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	4 cut(s)	481, 505, 517, 733
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	2 cut(s)	22, 287
BpmI	CTGGAG	2 cut(s)	340, 567
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	772
BsaBI	GATNNNNATC	2 cut(s)	45, 822
BsaJI	CCNNGG	3 cut(s)	129, 167, 575
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	353, 484, 542
Bse8I	GATNNNNATC	2 cut(s)	45, 822
BseBI	CCWGG	3 cut(s)	64, 130, 546
BseDI	CCNNGG	3 cut(s)	129, 167, 575
BseGI	GGATG	5 cut(s)	445, 488, 496, 505, 623
BseJI	GATNNNNATC	2 cut(s)	45, 822
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	174, 486
BseNI	ACTGG	3 cut(s)	353, 484, 542
BseXI	GCAGC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	802
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	592
BsmI	GAATGC	2 cut(s)	251, 559
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	34, 92
BspCNI	CTCAG	2 cut(s)	173, 487
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	61, 396, 543, 582
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	3 cut(s)	314, 359, 680
BsrI	ACTGG	3 cut(s)	353, 484, 542
BssECI	CCNNGG	3 cut(s)	129, 167, 575
BssMI	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
BssT1I	CCWWGG	2 cut(s)	167, 575
Bst2UI	CCWGG	3 cut(s)	64, 130, 546
Bst4CI	ACNGT	2 cut(s)	272, 293
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	3 cut(s)	160, 181, 495
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	5 cut(s)	445, 488, 496, 505, 623
BstKTI	GATC	6 cut(s)	322, 367, 595, 688, 721, 835
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	3 cut(s)	64, 130, 546
BstSCI	CCNGG	3 cut(s)	62, 128, 544
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	22, 287
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	5 cut(s)	445, 488, 496, 505, 623
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	3 cut(s)	477, 535, 895
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	520
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	542, 798
Csp6I	GTAC	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	3 cut(s)	101, 168, 474
CviJI	RGCY	4 cut(s)	88, 159, 178, 716
CviKI_1	RGCY	4 cut(s)	88, 159, 178, 716
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	160, 181, 495
DpnI	GATC	6 cut(s)	321, 366, 594, 687, 720, 834
DpnII	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	167, 575
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	542, 798
Eco88I	CYCGRG	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	542, 798
EcoRII	CCWGG	3 cut(s)	62, 128, 544
EcoT14I	CCWWGG	2 cut(s)	167, 575
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	167, 575
FaeI	CATG	3 cut(s)	104, 171, 477
FatI	CATG	3 cut(s)	100, 167, 473
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	5 cut(s)	432, 495, 503, 512, 630
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	2 cut(s)	340, 567
Hin1II	CATG	3 cut(s)	104, 171, 477
HinfI	GANTC	2 cut(s)	233, 460
HphI	GGTGA	3 cut(s)	50, 254, 827
Hpy188I	TCNGA	6 cut(s)	78, 409, 592, 597, 828, 920
Hpy188III	TCNNGA	5 cut(s)	101, 323, 368, 789, 804
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	135, 852
HpyCH4III	ACNGT	2 cut(s)	272, 293
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	6 cut(s)	239, 263, 477, 557, 746, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	160, 181, 495
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	104, 171, 477
Kzo9I	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	4 cut(s)	481, 505, 517, 733
MaeII	ACGT	1 cut(s)	149
MalI	GATC	6 cut(s)	321, 366, 594, 687, 720, 834
MboI	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
MboII	GAAGA	4 cut(s)	27, 257, 287, 867
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	611, 758
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	472, 681
MspA1I	CMGCKG	1 cut(s)	34
MspR9I	CCNGG	3 cut(s)	64, 130, 546
Mva1269I	GAATGC	2 cut(s)	251, 559
MvaI	CCWGG	3 cut(s)	64, 130, 546
MwoI	GCNNNNNNNGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
NlaIII	CATG	3 cut(s)	104, 171, 477
NlaIV	GGNNCC	4 cut(s)	61, 396, 543, 582
PaeR7I	CTCGAG	1 cut(s)	802
PagI	TCATGA	1 cut(s)	100
PaqCI	CACCTGC	1 cut(s)	230
PctI	GAATGC	2 cut(s)	251, 559
PfeI	GAWTC	2 cut(s)	233, 460
PfoI	TCCNGGA	2 cut(s)	62, 544
PkrI	GCNGC	1 cut(s)	33
PpuMI	RGGWCCY	2 cut(s)	542, 798
Psp5II	RGGWCCY	2 cut(s)	542, 798
Psp6I	CCWGG	3 cut(s)	62, 128, 544
PspGI	CCWGG	3 cut(s)	62, 128, 544
PspN4I	GGNNCC	4 cut(s)	61, 396, 543, 582
PspPI	GGNCC	2 cut(s)	542, 798
PspPPI	RGGWCCY	2 cut(s)	542, 798
PstI	CTGCAG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	472, 681
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	6 cut(s)	319, 364, 592, 685, 718, 832
Sau96I	GGNCC	2 cut(s)	542, 798
ScrFI	CCNGG	3 cut(s)	64, 130, 546
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	9 cut(s)	61, 152, 180, 197, 244, 400, 586, 718, 803
SfaNI	GCATC	4 cut(s)	481, 505, 517, 733
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	802
SinI	GGWCC	2 cut(s)	542, 798
SlaI	CTCGAG	1 cut(s)	802
SmiMI	CAYNNNNRTG	2 cut(s)	472, 681
SmlI	CTYRAG	2 cut(s)	787, 802
SmoI	CTYRAG	2 cut(s)	787, 802
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	34, 92
SspI	AATATT	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	62, 128, 544
StyI	CCWWGG	2 cut(s)	167, 575
TaaI	ACNGT	2 cut(s)	272, 293
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	3 cut(s)	721, 803, 835
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	233, 460
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	484, 542, 895
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	225, 354, 429, 462, 496
TspRI	CASTG	3 cut(s)	484, 542, 895
VpaK11BI	GGWCC	2 cut(s)	542, 798
XapI	RAATTY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.