Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Forward (+)

7540007 .. 7542771

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAATTGGAGAAGGAAACAAGTTGACACTTATTCTTCACACAATCCAAGGACTAACTTGCAGAGCAGAGAGCCACAGCACCACCAAGATTGTTGGCAATTAGGTGCGCCTTACTGGGAAAAAGAATTCTGTTTCATTGTTGGCTCAGTTCCATGGCGGAAGGTTGAAGAAACAAAGAAGTATATGCATCTCTATGAAAGCATCGTTCAATGGAATGATTCTGCTAATTTAGAGACATTCAACAATGAGAAACACCGGTATTGGGCAGCGATTAACGGCCTTTCCTGCAACATATCATTGCCAGATCCTGACATGTATATTGATGACATAGATTGGAACTCCAGTACTGATCCTGAACTGATTTTGGACTTGGAAAGGGAACCTGAACCTGAACCCTCCAACGATGAGAGCCAAGATAAAGGTGTCACTCTTGGTAATCCTCTCCTTTTAGATCAGTCGCTTGCATGCACTGGATGGGGCGATGCTGAAGATGACTTAAAAAATAATGAAAATCCTGCAAACTGGGGTAGTGGATGGGGCGCTGCTGAAGAAGGCTTAAAAAATAAAGAAAATCCTGCAAACTGGGGTTGTGGATGGGGCGACGCTGAAGTAGACTTCAAAAATAATGAAAATCCTGCAAACTGGGGTAGTGGATGGGGCATTGCTGAAGAAGACTTCAAAAGTAAACAGAATCATGCAAACTGGGGTTATGGATGGGGCGACGCTGAAGTAGACTTCAAAAATAAAGAAAATCCTGAAAACTGGGGTTGTGGATGGAATGCAGGTAATAAAGAAAATCCACGGGGACCTGATTCTACTCAGACTCAGAGCAAAGCAGCTGTAGGAGGATGGGATGACAGTTGGAACAACAATTGGGATAATAACTTAAGCAAATGGAAGAATAATATCGACGCTTCAAAGAACATGCACTATGGAAGAGCAGATGGATTGGTACAACTCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.72

Weight (kDa)

4.6

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	612, 732
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	299, 344
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	5 cut(s)	507, 567, 627, 687, 747
AfaI	GTAC	2 cut(s)	346, 954
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	255
AgsI	TTSAA	7 cut(s)	167, 209, 241, 619, 679, 739, 918
AluBI	AGCT	1 cut(s)	839
AluI	AGCT	1 cut(s)	839
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	299, 344
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	266, 542, 836
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	109, 542
AspS9I	GGNCC	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	278, 529, 848
BccI	CCATC	8 cut(s)	468, 528, 588, 648, 708, 768, 843, 938
BceAI	ACGGC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	886
BfuAI	ACCTGC	1 cut(s)	773
BisI	GCNGC	3 cut(s)	267, 543, 837
BlsI	GCNGC	3 cut(s)	268, 544, 838
BmcAI	AGTACT	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	2 cut(s)	381, 807
BmrI	ACTGGG	6 cut(s)	124, 532, 592, 652, 712, 772
BmsI	GCATC	3 cut(s)	196, 210, 472
BmuI	ACTGGG	6 cut(s)	124, 532, 592, 652, 712, 772
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	944
BsaJI	CCNNGG	3 cut(s)	47, 152, 800
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	8 cut(s)	119, 342, 475, 527, 587, 647, 707, 767
Bse3DI	GCAATG	2 cut(s)	296, 660
BseDI	CCNNGG	3 cut(s)	47, 152, 800
BseGI	GGATG	8 cut(s)	479, 539, 599, 659, 719, 779, 854, 859
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	296, 660
BseMII	CTCAG	3 cut(s)	159, 833, 839
BseNI	ACTGG	8 cut(s)	119, 342, 475, 527, 587, 647, 707, 767
BseXI	GCAGC	3 cut(s)	278, 529, 848
BshFI	GGCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	304, 349, 451
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	158, 832, 838
BspLI	GGNNCC	2 cut(s)	381, 807
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	2 cut(s)	299, 344
BspQI	GCTCTTC	1 cut(s)	931
BspTI	CTTAAG	1 cut(s)	886
BsrDI	GCAATG	2 cut(s)	296, 660
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	8 cut(s)	119, 342, 475, 527, 587, 647, 707, 767
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	47, 152, 800
BssMI	GATC	3 cut(s)	304, 349, 451
BssT1I	CCWWGG	2 cut(s)	47, 152
Bst4CI	ACNGT	1 cut(s)	860
Bst6I	CTCTTC	1 cut(s)	931
BstAFI	CTTAAG	1 cut(s)	886
BstC8I	GCNNGC	2 cut(s)	462, 466
BstDEI	CTNAG	3 cut(s)	145, 819, 825
BstDSI	CCRYGG	2 cut(s)	152, 800
BstF5I	GGATG	8 cut(s)	479, 539, 599, 659, 719, 779, 854, 859
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	109, 542
BstKTI	GATC	3 cut(s)	307, 352, 454
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	304, 349, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	3 cut(s)	316, 468, 928
BstSFI	CTRYAG	1 cut(s)	840
BstV1I	GCAGC	3 cut(s)	278, 529, 848
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	2 cut(s)	152, 800
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	8 cut(s)	479, 539, 599, 659, 719, 779, 854, 859
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	2 cut(s)	462, 466
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	109, 542
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	3 cut(s)	611, 731, 920
Csp6I	GTAC	2 cut(s)	345, 953
CspAI	ACCGGT	1 cut(s)	255
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	5 cut(s)	153, 313, 465, 695, 925
CviJI	RGCY	6 cut(s)	73, 144, 279, 411, 555, 839
CviKI_1	RGCY	6 cut(s)	73, 144, 279, 411, 555, 839
CviQI	GTAC	2 cut(s)	345, 953
DdeI	CTNAG	3 cut(s)	145, 819, 825
DpnI	GATC	3 cut(s)	306, 351, 453
DpnII	GATC	3 cut(s)	304, 349, 451
Eam1104I	CTCTTC	1 cut(s)	931
EarI	CTCTTC	1 cut(s)	931
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	47, 152
Eco47I	GGWCC	1 cut(s)	806
Eco57I	CTGAAG	5 cut(s)	507, 567, 627, 687, 747
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	47, 152
EcoT22I	ATGCAT	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	47, 152
FaeI	CATG	5 cut(s)	156, 316, 468, 698, 928
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	5 cut(s)	152, 312, 464, 694, 924
FblI	GTMKAC	2 cut(s)	612, 732
Fnu4HI	GCNGC	3 cut(s)	267, 543, 837
FokI	GGATG	8 cut(s)	486, 546, 606, 666, 726, 786, 861, 866
Fsp4HI	GCNGC	3 cut(s)	267, 543, 837
GlaI	GCGC	2 cut(s)	108, 541
GluI	GCNGC	3 cut(s)	267, 543, 837
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	3 cut(s)	611, 731, 920
HhaI	GCGC	2 cut(s)	109, 542
Hin1II	CATG	5 cut(s)	156, 316, 468, 698, 928
Hin6I	GCGC	2 cut(s)	107, 540
HinP1I	GCGC	2 cut(s)	107, 540
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	218, 691, 812, 823
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	4 cut(s)	25, 613, 686, 733
Hpy188I	TCNGA	2 cut(s)	822, 828
Hpy188III	TCNNGA	3 cut(s)	308, 353, 755
Hpy8I	GTNNAC	4 cut(s)	25, 613, 686, 733
Hpy99I	CGWCG	3 cut(s)	605, 725, 914
HpyAV	CCTTC	3 cut(s)	6, 154, 545
HpyCH4III	ACNGT	1 cut(s)	860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	3 cut(s)	145, 819, 825
Hsp92II	CATG	5 cut(s)	156, 316, 468, 698, 928
HspAI	GCGC	2 cut(s)	107, 540
Kzo9I	GATC	3 cut(s)	304, 349, 451
LguI	GCTCTTC	1 cut(s)	931
Lsp1109I	GCAGC	3 cut(s)	278, 529, 848
LweI	GCATC	3 cut(s)	196, 210, 472
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	306, 351, 453
MboI	GATC	3 cut(s)	304, 349, 451
MboII	GAAGA	8 cut(s)	27, 179, 500, 560, 680, 683, 910, 948
MfeI	CAATTG	1 cut(s)	871
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	5 cut(s)	4, 98, 125, 226, 871
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	2 cut(s)	423, 842
MnlI	CCTC	3 cut(s)	406, 450, 839
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	4 cut(s)	273, 497, 557, 887
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	839
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	871
Mva1269I	GAATGC	1 cut(s)	784
MwoI	GCNNNNNNNGC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	304, 349, 451
NlaIII	CATG	5 cut(s)	156, 316, 468, 698, 928
NlaIV	GGNNCC	2 cut(s)	381, 807
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	189
NspI	RCATGY	3 cut(s)	316, 468, 928
PaeI	GCATGC	1 cut(s)	468
PciI	ACATGT	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	931
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	3 cut(s)	218, 691, 812
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	268, 544, 838
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
PpuMI	RGGWCCY	1 cut(s)	806
PscI	ACATGT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	806
PspN4I	GGNNCC	2 cut(s)	381, 807
PspPI	GGNCC	1 cut(s)	806
PspPPI	RGGWCCY	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	2 cut(s)	346, 954
RsaNI	GTAC	2 cut(s)	345, 953
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	931
SaqAI	TTAA	4 cut(s)	273, 497, 557, 887
SatI	GCNGC	3 cut(s)	267, 543, 837
Sau3AI	GATC	3 cut(s)	304, 349, 451
Sau96I	GGNCC	1 cut(s)	806
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	1 cut(s)	817
SetI	ASST	8 cut(s)	106, 165, 385, 391, 424, 787, 811, 841
SfaNI	GCATC	3 cut(s)	196, 210, 472
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	886, 959
SmoI	CTYRAG	2 cut(s)	886, 959
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	5 cut(s)	4, 98, 125, 226, 871
SsiI	CCGC	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	47, 152
TaaI	ACNGT	1 cut(s)	860
TaqI	TCGA	1 cut(s)	909
TasI	AATT	5 cut(s)	4, 98, 125, 226, 871
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	218, 691, 812
Tru1I	TTAA	4 cut(s)	273, 497, 557, 887
Tru9I	TTAA	4 cut(s)	273, 497, 557, 887
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	3 cut(s)	266, 542, 836
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	17, 124, 210, 522, 642
TspRI	CASTG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	3 cut(s)	316, 468, 928
XmiI	GTMKAC	2 cut(s)	612, 732
ZrmI	AGTACT	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.