Prupe.4G071800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0008634
Physical Location & Seq
Reverse (-)
3517371 .. 3518452
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G071800.1

Sequence Viewer

Length: 861 bp
ATGAGTTGGAGAAGACAACAAGGTGAAGGTGGTAGCCACAGTGGTTACTATTCTCAACCGTGGAAGAATCATTGGAGTTCATTACAGAAGAAGAGAAAGCCACAGGATCACAGCGTGAGCGTGCCTGACTGGGAAAAGCAATTCTGTATGAGGGCTGGCTCAGTTCCATGGGGAAAACTCGTAGAAACAAAAAAGTATATGTCTCTCCACAAAAAAATTGTTCAATGGAACGATTCTGCTGGCGAGGAGGCATTCAACGATGCGAAAAGCTGGTTCTGGGCGGAGATCAACGGCCTTCCTTGCAACATATCTTTGCCGGATCCTGACGCTTATATTGATGATGTAGATTGGAGCTCGTCCAACATTGATCCTGAGGTGATTTTGGACTTGGAAAGGAGCAGGGAACCTAAACCCTACTACTATGATCATGGTCAAACCCTAGATCCTGAGGATGTTGTCATTATTGGCCTTCATCAGACGGTCTCAAATGAGACGGTTGCGTGCACATGGGGTGACTGCGATGAGGATCTGAAAAATAAAGAAAATGTTCATGAAAATCCTTGGGAGCCTGCTTCTGGTCATCAGAGCAAAGCTGCAGCCATGGGTGGAGGATGGGGCAGCAACACTTGTAACAAGTGGGAGAATAATTGCTCACGTGATGAATGGAAGTATGGTTCAAGGAAGACTAGTTATTATGGAAGAGGTGATCATGGAGTTTCTTGGGGAAATTTCAAGTCGGATGTAAATGGTGGCAGTTGGTGGCATAACTCAAGATATAAGAATTCGAGATTTCTCGGTGATGATGGTTATCAGAAAGCCGGAGGGCGGTGGAGGAAGGAGGAACAAAGTTCACGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.95

Weight (kDa)

6.07

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 281, 826
AclWI GGATC 6 cut(s) 114, 314, 327, 362, 437, 534
AcsI RAATTY 2 cut(s) 727, 781
AcvI CACGTG 1 cut(s) 656
AdeI CACNNNGTG 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 575, 825
AgsI TTSAA 4 cut(s) 224, 256, 678, 733
AhlI ACTAGT 1 cut(s) 686
AleI CACNNNNGTG 1 cut(s) 856
AloI GAACNNNNNNTCC 2 cut(s) 658, 690
AluBI AGCT 3 cut(s) 270, 354, 593
AluI AGCT 3 cut(s) 270, 354, 593
Alw21I GWGCWC 2 cut(s) 356, 506
Alw26I GTCTC 3 cut(s) 207, 485, 487
Alw44I GTGCAC 1 cut(s) 502
AlwI GGATC 6 cut(s) 114, 314, 327, 362, 437, 534
AoxI GGCC 2 cut(s) 292, 466
ApaLI GTGCAC 1 cut(s) 502
ApeKI GCWGC 3 cut(s) 593, 596, 618
ApoI RAATTY 2 cut(s) 727, 781
Asp700I GAANNNNTTC 1 cut(s) 546
AsuHPI GGTGA 5 cut(s) 35, 388, 524, 716, 809
AxyI CCTNAGG 2 cut(s) 372, 447
BaeGI GKGCMC 1 cut(s) 506
BamHI GGATCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 356
BbrPI CACGTG 1 cut(s) 656
BbsI GAAGAC 2 cut(s) 19, 689
Bbv12I GWGCWC 2 cut(s) 356, 506
BbvI GCAGC 3 cut(s) 580, 608, 630
BccI CCATC 2 cut(s) 606, 797
BceAI ACGGC 1 cut(s) 307
BclI TGATCA 2 cut(s) 424, 706
BcoDI GTCTC 3 cut(s) 207, 485, 487
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 2 cut(s) 440, 687
BfmI CTRYAG 1 cut(s) 594
BisI GCNGC 3 cut(s) 594, 597, 619
BlsI GCNGC 3 cut(s) 595, 598, 620
BmiI GGNNCC 3 cut(s) 321, 405, 567
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 19, 689
BpuEI CTTGAG 1 cut(s) 754
BsaAI YACGTR 1 cut(s) 656
BsaBI GATNNNNATC 2 cut(s) 525, 807
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 4 cut(s) 59, 167, 560, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 825
Bse1I ACTGG 1 cut(s) 134
Bse21I CCTNAGG 2 cut(s) 372, 447
Bse8I GATNNNNATC 2 cut(s) 525, 807
BseDI CCNNGG 4 cut(s) 59, 167, 560, 600
BseGI GGATG 3 cut(s) 457, 617, 745
BseJI GATNNNNATC 2 cut(s) 525, 807
BseLI CCNNNNNNNGG 2 cut(s) 575, 825
BseMII CTCAG 3 cut(s) 174, 363, 438
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 3 cut(s) 580, 608, 630
BshFI GGCC 2 cut(s) 294, 468
BsiHKAI GWGCWC 2 cut(s) 356, 506
BsiSI CCGG 2 cut(s) 317, 819
BslI CCNNNNNNNGG 2 cut(s) 575, 825
BsmAI GTCTC 3 cut(s) 207, 485, 487
BsmBI CGTCTC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 294, 468
Bso31I GGTCTC 1 cut(s) 487
Bsp1286I GDGCHC 2 cut(s) 356, 506
Bsp143I GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
Bsp19I CCATGG 2 cut(s) 167, 600
BspACI CCGC 2 cut(s) 281, 826
BspANI GGCC 2 cut(s) 294, 468
BspCNI CTCAG 3 cut(s) 173, 364, 439
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 321, 405, 567
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 6 cut(s) 114, 314, 327, 362, 437, 534
BspTNI GGTCTC 1 cut(s) 487
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 59, 167, 560, 600
BssMI GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
BssT1I CCWWGG 3 cut(s) 167, 560, 600
Bst4CI ACNGT 4 cut(s) 41, 60, 481, 496
Bst6I CTCTTC 2 cut(s) 86, 694
BstBAI YACGTR 1 cut(s) 656
BstC8I GCNNGC 5 cut(s) 122, 157, 241, 502, 570
BstDEI CTNAG 3 cut(s) 160, 372, 447
BstDSI CCRYGG 3 cut(s) 59, 167, 600
BstF5I GGATG 3 cut(s) 457, 617, 745
BstKTI GATC 8 cut(s) 109, 288, 322, 370, 427, 445, 529, 709
BstMAI GTCTC 3 cut(s) 207, 485, 487
BstMBI GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 506
BstV1I GCAGC 3 cut(s) 580, 608, 630
BstV2I GAAGAC 2 cut(s) 19, 689
BstX2I RGATCY 3 cut(s) 319, 442, 526
BstYI RGATCY 3 cut(s) 319, 442, 526
Bsu36I CCTNAGG 2 cut(s) 372, 447
BsuRI GGCC 2 cut(s) 294, 468
BtgI CCRYGG 3 cut(s) 59, 167, 600
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 457, 617, 745
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 5 cut(s) 122, 157, 241, 502, 570
CciI TCATGA 1 cut(s) 550
CseI GACGC 1 cut(s) 335
CviAII CATG 6 cut(s) 168, 428, 507, 551, 601, 710
DdeI CTNAG 3 cut(s) 160, 372, 447
DpnI GATC 8 cut(s) 108, 287, 321, 369, 426, 444, 528, 708
DpnII GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
DraIII CACNNNGTG 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 86, 694
EarI CTCTTC 2 cut(s) 86, 694
EciI GGCGGA 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 3 cut(s) 167, 560, 600
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 656
Eco81I CCTNAGG 2 cut(s) 372, 447
EcoICRI GAGCTC 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 781
EcoT14I CCWWGG 3 cut(s) 167, 560, 600
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 3 cut(s) 167, 560, 600
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 6 cut(s) 171, 431, 510, 554, 604, 713
FatI CATG 6 cut(s) 167, 427, 506, 550, 600, 709
FbaI TGATCA 2 cut(s) 424, 706
Fnu4HI GCNGC 3 cut(s) 594, 597, 619
FokI GGATG 3 cut(s) 464, 624, 752
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 594, 597, 619
FspBI CTAG 2 cut(s) 440, 687
GluI GCNGC 3 cut(s) 594, 597, 619
HaeIII GGCC 2 cut(s) 294, 468
HapII CCGG 2 cut(s) 317, 819
HgaI GACGC 1 cut(s) 335
Hin1II CATG 6 cut(s) 171, 431, 510, 554, 604, 713
HinfI GANTC 2 cut(s) 67, 233
HpaII CCGG 2 cut(s) 317, 819
HphI GGTGA 5 cut(s) 35, 388, 524, 716, 809
Hpy166II GTNNAC 2 cut(s) 504, 851
Hpy188I TCNGA 5 cut(s) 477, 531, 585, 739, 813
Hpy188III TCNNGA 6 cut(s) 323, 371, 446, 551, 771, 786
Hpy8I GTNNAC 2 cut(s) 504, 851
HpyAV CCTTC 4 cut(s) 20, 305, 479, 829
HpyCH4III ACNGT 4 cut(s) 41, 60, 481, 496
HpyCH4IV ACGT 2 cut(s) 655, 853
HpyCH4V TGCA 3 cut(s) 303, 504, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 3 cut(s) 160, 372, 447
HpySE526I ACGT 2 cut(s) 655, 853
Hsp92II CATG 6 cut(s) 171, 431, 510, 554, 604, 713
Ksp22I TGATCA 2 cut(s) 424, 706
Kzo9I GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
LmnI GCTCC 3 cut(s) 351, 396, 565
Lsp1109I GCAGC 3 cut(s) 580, 608, 630
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 440, 687
MaeII ACGT 2 cut(s) 655, 853
MaeIII GTNAC 3 cut(s) 44, 512, 629
MalI GATC 8 cut(s) 108, 287, 321, 369, 426, 444, 528, 708
MboI GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
MboII GAAGA 6 cut(s) 24, 76, 100, 103, 694, 711
MflI RGATCY 3 cut(s) 319, 442, 526
MhlI GDGCHC 2 cut(s) 356, 506
MluCI AATT 5 cut(s) 140, 216, 646, 727, 781
MmeI TCCRAC 2 cut(s) 384, 717
MroXI GAANNNNTTC 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 856
MspI CCGG 2 cut(s) 317, 819
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 300
NcoI CCATGG 2 cut(s) 167, 600
NdeII GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
NlaIII CATG 6 cut(s) 171, 431, 510, 554, 604, 713
NlaIV GGNNCC 3 cut(s) 321, 405, 567
NmuCI GTSAC 1 cut(s) 512
OliI CACNNNNGTG 1 cut(s) 856
PagI TCATGA 1 cut(s) 550
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 67, 233
PkrI GCNGC 3 cut(s) 595, 598, 620
PmaCI CACGTG 1 cut(s) 656
PmlI CACGTG 1 cut(s) 656
Ppu21I YACGTR 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 356
PspCI CACGTG 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 321, 405, 567
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 3 cut(s) 319, 442, 526
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 356
SatI GCNGC 3 cut(s) 594, 597, 619
Sau3AI GATC 8 cut(s) 106, 285, 319, 367, 424, 442, 526, 706
SduI GDGCHC 2 cut(s) 356, 506
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 5 cut(s) 140, 216, 646, 727, 781
SsiI CCGC 2 cut(s) 281, 826
SspMI CTAG 2 cut(s) 440, 687
SstI GAGCTC 1 cut(s) 356
StyI CCWWGG 3 cut(s) 167, 560, 600
TaaI ACNGT 4 cut(s) 41, 60, 481, 496
TaiI ACGT 2 cut(s) 658, 856
TaqI TCGA 1 cut(s) 785
TasI AATT 5 cut(s) 140, 216, 646, 727, 781
TfiI GAWTC 2 cut(s) 67, 233
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 593, 596, 618
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 5 cut(s) 69, 461, 539, 567, 675
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 502
XapI RAATTY 2 cut(s) 727, 781
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 2 cut(s) 440, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.