Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Reverse (-)

8733660 .. 8736982

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G050400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGGAGTTGGAGAGGGCAACAAGGTTACATTTATTCTCAACAGCACATTCCCTGGACTAAACCACAGAACAGAAAGCCGCCACAAGATAGTTGGCAGTACAGTGTGCCGCACTGGGAAAAGAAATTCTGTTCAATTGTTGGCTCAGTTCCATGGGGAAAACTCATAGAAACAAAGAAGTATATGTATCTCTATGAAAATATCGTTCGGTGGAATGATTCTGCTGGTGAAGAGGCATTCAACAATGCAAAAAGCCGGTTTTGGGCGGAGATTAATGGTCTACACTGTAGCATATTGTTGCCGGATCCTGACATTTATATCGATGATATTGATTGGAACTCCACCATTGATCCTGAACTGGTTTTGGATTTGGAAAGGGAACCTAAACCCTCCGATTATAAAGCCCAAGAAGAGGCTGTTATTCTCGGCAATCCCCCCCTTTTAAATCAGTCATTTTCGTGCACTGGATGGGGTGATGAAGAAGAGGAATTCAAAAATAAAGAAAATCCTGACAATTGGAATCGTGGATGGAATGAGGATAATAAAGAAAATCCTTGGGAACCTGTTTCTGCCCAGAGTAAAGCAGGTGTAGGAGGATGGGATAACAATTGGGAGAACAATGCTAGTGAATGGAAGAACAATACTGGTGGTCCAAACAACATGCATTATAGACGAACTGATGGAGCTTTCTGGGGAAAGTCGGATGCAAATAGCAGGAAGAAAGAGGGTGGCAGTTGGTACAACTCAAGATACAAGACCTCAAGATTTAACGGCGATTACTATCAGAAAGATCGAGGGTGGAGGAACGGAGGGAGAAGGAACAACAGGGTTCATGTTGGCTATGAAAACCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

33.33

Weight (kDa)

5.68

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AarI	CACCTGC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	3 cut(s)	80, 110, 266
AclWI	GGATC	3 cut(s)	299, 312, 344
AcsI	RAATTY	2 cut(s)	125, 488
AfaI	GTAC	2 cut(s)	101, 740
AfiI	CCNNNNNNNGG	2 cut(s)	262, 412
AgsI	TTSAA	3 cut(s)	135, 241, 493
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	686
AluI	AGCT	1 cut(s)	686
Alw21I	GWGCWC	1 cut(s)	464
Alw44I	GTGCAC	1 cut(s)	460
AlwI	GGATC	3 cut(s)	299, 312, 344
ApaLI	GTGCAC	1 cut(s)	460
ApoI	RAATTY	2 cut(s)	125, 488
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	239, 485
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	464
BccI	CCATC	4 cut(s)	462, 522, 591, 674
BceAI	ACGGC	1 cut(s)	787
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	2 cut(s)	80, 110
BlsI	GCNGC	2 cut(s)	81, 111
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	306, 381, 561
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	730, 745
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	3 cut(s)	53, 152, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 412
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	4 cut(s)	119, 363, 469, 649
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	53, 152, 554
BseGI	GGATG	4 cut(s)	473, 533, 602, 709
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	262, 412
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	4 cut(s)	119, 363, 469, 649
BseSI	GKGCMC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	256, 302
BslI	CCNNNNNNNGG	2 cut(s)	262, 412
BsmI	GAATGC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	304, 349, 790
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	3 cut(s)	80, 110, 266
BspCNI	CTCAG	1 cut(s)	158
BspDI	ATCGAT	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	306, 381, 561
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	3 cut(s)	299, 312, 344
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	4 cut(s)	119, 363, 469, 649
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	53, 152, 554
BssMI	GATC	3 cut(s)	304, 349, 790
BssT1I	CCWWGG	2 cut(s)	152, 554
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	104, 287
Bst6I	CTCTTC	3 cut(s)	225, 405, 477
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	4 cut(s)	473, 533, 602, 709
BstKTI	GATC	3 cut(s)	307, 352, 793
BstMBI	GATC	3 cut(s)	304, 349, 790
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	473, 533, 602, 709
BtsIMutI	CAGTG	4 cut(s)	109, 112, 283, 462
BveI	ACCTGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	100, 739
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	3 cut(s)	153, 661, 833
CviJI	RGCY	7 cut(s)	79, 144, 255, 404, 416, 686, 840
CviKI_1	RGCY	7 cut(s)	79, 144, 255, 404, 416, 686, 840
CviQI	GTAC	2 cut(s)	100, 739
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	3 cut(s)	306, 351, 792
DpnII	GATC	3 cut(s)	304, 349, 790
DraI	TTTAAA	1 cut(s)	444
Eam1104I	CTCTTC	3 cut(s)	225, 405, 477
EarI	CTCTTC	3 cut(s)	225, 405, 477
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	152, 554
Eco47I	GGWCC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	152, 554
EcoT22I	ATGCAT	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	152, 554
FaeI	CATG	3 cut(s)	156, 664, 836
FatI	CATG	3 cut(s)	152, 660, 832
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	80, 110
FokI	GGATG	4 cut(s)	480, 540, 609, 716
Fsp4HI	GCNGC	2 cut(s)	80, 110
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	2 cut(s)	80, 110
HapII	CCGG	2 cut(s)	256, 302
Hin1II	CATG	3 cut(s)	156, 664, 836
HinfI	GANTC	2 cut(s)	218, 520
HpaII	CCGG	2 cut(s)	256, 302
HphI	GGTGA	2 cut(s)	239, 485
Hpy166II	GTNNAC	2 cut(s)	281, 462
Hpy188I	TCNGA	3 cut(s)	394, 703, 786
Hpy188III	TCNNGA	5 cut(s)	308, 353, 509, 747, 762
Hpy8I	GTNNAC	2 cut(s)	281, 462
HpyAV	CCTTC	1 cut(s)	810
HpyCH4III	ACNGT	2 cut(s)	104, 287
HpyCH4V	TGCA	4 cut(s)	248, 462, 664, 707
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	156, 664, 836
Kzo9I	GATC	3 cut(s)	304, 349, 790
LmnI	GCTCC	1 cut(s)	683
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	306, 351, 792
MboI	GATC	3 cut(s)	304, 349, 790
MboII	GAAGA	6 cut(s)	242, 422, 491, 494, 646, 730
MfeI	CAATTG	3 cut(s)	135, 514, 607
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	5 cut(s)	125, 135, 488, 514, 607
MmeI	TCCRAC	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	666
MseI	TTAA	3 cut(s)	273, 443, 768
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	2 cut(s)	256, 302
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	3 cut(s)	135, 514, 607
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	304, 349, 790
NlaIII	CATG	3 cut(s)	156, 664, 836
NlaIV	GGNNCC	3 cut(s)	306, 381, 561
NmeAIII	GCCGAG	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	666
NspI	RCATGY	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	575
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	218, 520
PkrI	GCNGC	2 cut(s)	81, 111
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	306, 381, 561
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	101, 740
RsaNI	GTAC	2 cut(s)	100, 739
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	3 cut(s)	273, 443, 768
SatI	GCNGC	2 cut(s)	80, 110
Sau3AI	GATC	3 cut(s)	304, 349, 790
Sau96I	GGNCC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	7 cut(s)	28, 385, 565, 589, 688, 761, 852
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	745, 760
SmoI	CTYRAG	2 cut(s)	745, 760
Sse9I	AATT	5 cut(s)	125, 135, 488, 514, 607
SsiI	CCGC	3 cut(s)	80, 110, 266
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	152, 554
TaaI	ACNGT	2 cut(s)	104, 287
TaqI	TCGA	2 cut(s)	321, 793
TasI	AATT	5 cut(s)	125, 135, 488, 514, 607
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	2 cut(s)	82, 112
TfiI	GAWTC	2 cut(s)	218, 520
Tru1I	TTAA	3 cut(s)	273, 443, 768
Tru9I	TTAA	3 cut(s)	273, 443, 768
TscAI	CASTG	4 cut(s)	109, 119, 290, 469
TspDTI	ATGAA	4 cut(s)	210, 492, 821, 858
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	4 cut(s)	109, 119, 290, 469
VneI	GTGCAC	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	125, 488
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.