Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Forward (+)

36227634 .. 36228131

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1269900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGTTCCTATCTCGGCCGCAGAGGCACCAATCTTGGACTAAAGATCGTAGTCAGCGCCGTTACAAGTCACTTAGATGTGTGCCTTATTGGGAAAGGAAGTTTTGCACGACGGTTGGATCAGTCCCATGGCGAAAACTCGTCGAAACAAAGAAGTACATGTCTCTCTATAAAAACATCGTTGAGTGGAATGACTCGGCCGGAGAAGAGGCCTTCAACAACGCGAAAAACCGGTTTTGGGCGGAGATGAACGGCCTGATTCCCAGCTCCGACATATCTTTGCCGGATCCCGACATGTACATTGATGACATAGATTGGAGCTCATCATGCAACAATATTGATCCTCAACTGATTTTAGACTTGGAAAAGAGCAAGAAAACTAAACCTTCCGATGATCGTGAAGCCGAAACCCTAGGCAATGATCGTGTGAGTTTGTTATTCTCGGCCTTTATCTCCTATCTATTTAAATCCGACGACATTGCCGTGCTCTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.43

Weight (kDa)

7.65

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	20, 242
AclWI	GGATC	4 cut(s)	127, 281, 294, 335
AcoI	YGGCCR	2 cut(s)	17, 198
AfaI	GTAC	2 cut(s)	158, 299
AfiI	CCNNNNNNNGG	2 cut(s)	238, 489
AflIII	ACRYGT	2 cut(s)	159, 294
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	2 cut(s)	267, 321
AluI	AGCT	2 cut(s)	267, 321
Alw21I	GWGCWC	2 cut(s)	323, 489
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	127, 281, 294, 335
AoxI	GGCC	5 cut(s)	17, 198, 210, 253, 444
AsiGI	ACCGGT	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	60
AvrII	CCTAGG	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	323, 489
BceAI	ACGGC	3 cut(s)	45, 268, 467
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	20
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	29, 288
BsaJI	CCNNGG	2 cut(s)	128, 412
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 489
Bse118I	RCCGGY	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	424, 477
BseDI	CCNNGG	2 cut(s)	128, 412
BseLI	CCNNNNNNNGG	2 cut(s)	238, 489
BseMI	GCAATG	2 cut(s)	424, 477
BseX3I	CGGCCG	2 cut(s)	17, 198
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	2 cut(s)	20, 201
BshFI	GGCC	5 cut(s)	19, 200, 212, 255, 446
BshNI	GGYRCC	1 cut(s)	27
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	2 cut(s)	20, 201
BsiHKAI	GWGCWC	2 cut(s)	323, 489
BsiSI	CCGG	3 cut(s)	201, 232, 284
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	238, 489
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	5 cut(s)	19, 200, 212, 255, 446
Bsp1286I	GDGCHC	2 cut(s)	323, 489
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	2 cut(s)	20, 242
BspANI	GGCC	5 cut(s)	19, 200, 212, 255, 446
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	29, 288
BspPI	GGATC	4 cut(s)	127, 281, 294, 335
BspT107I	GGYRCC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	424, 477
BsrFI	RCCGGY	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	128, 412
BssMI	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
BssT1I	CCWWGG	2 cut(s)	128, 412
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	6 cut(s)	49, 122, 289, 343, 397, 424
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
BstMCI	CGRYCG	2 cut(s)	20, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 327
BstNSI	RCATGY	2 cut(s)	163, 298
BstUI	CGCG	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BstZI	CGGCCG	2 cut(s)	17, 198
BsuRI	GGCC	5 cut(s)	19, 200, 212, 255, 446
BtgI	CCRYGG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	157, 298
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	4 cut(s)	129, 160, 295, 327
CviJI	RGCY	8 cut(s)	19, 200, 212, 255, 267, 321, 404, 446
CviKI_1	RGCY	8 cut(s)	19, 200, 212, 255, 267, 321, 404, 446
CviQI	GTAC	2 cut(s)	157, 298
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	6 cut(s)	48, 121, 288, 342, 396, 423
DpnII	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
DraI	TTTAAA	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	17, 198
EagI	CGGCCG	2 cut(s)	17, 198
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	321
EclXI	CGGCCG	2 cut(s)	17, 198
Eco130I	CCWWGG	2 cut(s)	128, 412
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	323
Eco52I	CGGCCG	2 cut(s)	17, 198
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	128, 412
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	128, 412
FaeI	CATG	4 cut(s)	132, 163, 298, 330
FaiI	YATR	7 cut(s)	130, 161, 171, 275, 296, 311, 328
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	128, 159, 294, 326
Fnu4HI	GCNGC	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	5 cut(s)	19, 200, 212, 255, 446
HapII	CCGG	3 cut(s)	201, 232, 284
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	132, 163, 298, 330
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	194, 259
HpaII	CCGG	3 cut(s)	201, 232, 284
Hpy188I	TCNGA	3 cut(s)	271, 391, 472
Hpy188III	TCNNGA	3 cut(s)	290, 398, 490
Hpy99I	CGWCG	3 cut(s)	115, 146, 476
HpyAV	CCTTC	2 cut(s)	223, 396
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	4, 108, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 327
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	132, 163, 298, 330
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
LmnI	GCTCC	2 cut(s)	272, 318
LpnPI	CCDG	6 cut(s)	214, 245, 269, 277, 297, 475
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	62, 69
MalI	GATC	6 cut(s)	48, 121, 288, 342, 396, 423
MboI	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	323, 489
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	3 cut(s)	97, 294, 495
MnlI	CCTC	3 cut(s)	18, 202, 354
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	76, 482
MspI	CCGG	3 cut(s)	201, 232, 284
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	25, 327
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
NlaIII	CATG	4 cut(s)	132, 163, 298, 330
NlaIV	GGNNCC	2 cut(s)	29, 288
NmeAIII	GCCGAG	2 cut(s)	176, 422
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	2 cut(s)	163, 298
PceI	AGGCCT	1 cut(s)	212
PciI	ACATGT	2 cut(s)	159, 294
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	2 cut(s)	159, 294
Psp124BI	GAGCTC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	29, 288
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	158, 299
RsaNI	GTAC	2 cut(s)	157, 298
RseI	CAYNNNNRTG	2 cut(s)	76, 482
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	6 cut(s)	46, 119, 286, 340, 394, 421
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	323, 489
SetI	ASST	3 cut(s)	269, 323, 388
SmiI	ATTTAAAT	1 cut(s)	466
SmiMI	CAYNNNNRTG	2 cut(s)	76, 482
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	20, 242
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	128, 412
SwaI	ATTTAAAT	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	144
TatI	WGTACW	2 cut(s)	156, 297
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	263
XceI	RCATGY	2 cut(s)	163, 298
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.