Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Reverse (-)

10608980 .. 10612759

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1086400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGTTGGAGAAGGAAACAAGTTGACGCTTATTCTCCACACAATCCAAGGACTAAATTGCAGAGCAGAGAGCCACAGCACCACCAAGATTGTTGGCAATTAGGTGCACCTTACTGGGAAAAGCAATTCTGTTTGATTGTTGGCTCAGTTCCATGGCGGAGGGTTGTAGAAACAAAGAAGGATATGCATCTCTATGAAAGCATCGTTCAATGGAATGATTCTGCTAATTTAGAGACATTCAACAATGAGAAATACCGGTTTTGGGCAGCGATTAACGGCCTTTCCTGCAACATATCATTGCCAGATCCTGACATGTATATTGATGACATAGATTGGAACTCCAGTATTGATCCTGAACTGATTTTGGACTTGGAAAGGGAACCTGAACCCTCCAATGATGAGAGCCAAGATAAAGGTGTCACTGTTGGTAATCCTCTCCTTTTAGATCAGTCGCTTGCATGCATTGGATGGGGCGATGCTGAAGATGACCTAAAAAATAATGAAAATCCTGCAAACTGGGGTAGTGGATGGGGCGCTGCTGAAGAAGACTTAAAAAATAAAGAAAATCCTGCAAACTGGGGTTGTGGATGGGGCGACGCTGAAGTAGACTTCAAAAATAAAGAAAATCCTGCAAACTGGGGTAGTGGATGGGGCATTGCTGAAGAAGACTTCAAAAGTATACAGAATCATGCAAACTGGGGTTATGGATGGGGCATTGCTGAAGAAGACTTCAAAAGTAATCAGAATCATGCAAACTGGGGTTATGGATGGAGCAATGCTGAAGTAGACTTCAAAAATAAAGAAAATCCTGAAAACTGGGGTTGTGGATGGAATGCGGATAATAAAGAAAATCCACGGAGACCTGATTCTACTCAGACTCAGAGCAAAGCAGCTGTAGGAGGATGGGATAACAGTTGGAACAACAATTGGGATAATAACTTAAGCAAGTGGAAGAACAATATCGACGCTTCAAAGAACATGCATTATGGAAGAGCTGATGGAGCTTCATGGGGAAATTCAAATGGAAATGGAAGGAAGAAAGATGGAGGTAGTTGGTACAACTCAAGGTATAAGACCTCGAGAGTTCAAGGTGACTATTACCAGAAAAACGGAGGGTGGAGTAACGGAGGCAGAAGGAACAACAGAGATCATGTCGGTTACGAGAACCTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

392

Amino Acids

44.72

Weight (kDa)

4.97

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	606, 679, 786
AciI	CCGC	2 cut(s)	157, 836
AclWI	GGATC	2 cut(s)	299, 344
AcsI	RAATTY	1 cut(s)	1015
AcuI	CTGAAG	6 cut(s)	501, 561, 621, 681, 741, 801
AfaI	GTAC	1 cut(s)	1058
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	940
AflIII	ACRYGT	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	255
AgsI	TTSAA	9 cut(s)	209, 241, 613, 673, 733, 793, 972, 1020, 1088
AjnI	CCWGG	1 cut(s)	1167
AluBI	AGCT	3 cut(s)	893, 995, 1004
AluI	AGCT	3 cut(s)	893, 995, 1004
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	227, 853
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	299, 344
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	1078
AoxI	GGCC	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	266, 536, 890
ApoI	RAATTY	1 cut(s)	1015
AsiGI	ACCGGT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	1103
AvaI	CYCGRG	1 cut(s)	1078
BaeGI	GKGCMC	1 cut(s)	109
BbsI	GAAGAC	3 cut(s)	552, 672, 732
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	278, 523, 902
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	1169
BcoDI	GTCTC	2 cut(s)	227, 853
BfmI	CTRYAG	1 cut(s)	894
BfoI	RGCGCY	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	940
BisI	GCNGC	3 cut(s)	267, 537, 891
BlsI	GCNGC	3 cut(s)	268, 538, 892
Bme1390I	CCNGG	1 cut(s)	1169
BmeT110I	CYCGRG	1 cut(s)	1078
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	1169
BmrI	ACTGGG	7 cut(s)	124, 526, 586, 646, 706, 766, 826
BmsI	GCATC	3 cut(s)	196, 210, 466
BmuI	ACTGGG	7 cut(s)	124, 526, 586, 646, 706, 766, 826
BpiI	GAAGAC	3 cut(s)	552, 672, 732
BpmI	CTGGAG	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	1048
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	3 cut(s)	47, 152, 854
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	8 cut(s)	119, 342, 521, 581, 641, 701, 761, 821
Bse3DI	GCAATG	4 cut(s)	296, 654, 714, 781
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	1169
BseDI	CCNNGG	3 cut(s)	47, 152, 854
BseGI	GGATG	8 cut(s)	473, 533, 593, 653, 713, 773, 833, 908
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	4 cut(s)	296, 654, 714, 781
BseMII	CTCAG	3 cut(s)	159, 887, 893
BseNI	ACTGG	8 cut(s)	119, 342, 521, 581, 641, 701, 761, 821
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	278, 523, 902
BshFI	GGCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	227, 853
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	1 cut(s)	1078
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	304, 349, 445, 1147
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	2 cut(s)	157, 836
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	158, 886, 892
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	299, 344
BspQI	GCTCTTC	1 cut(s)	985
BspTI	CTTAAG	1 cut(s)	940
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	4 cut(s)	296, 654, 714, 781
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	8 cut(s)	119, 342, 521, 581, 641, 701, 761, 821
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	47, 152, 854
BssMI	GATC	4 cut(s)	304, 349, 445, 1147
BssNAI	GTATAC	1 cut(s)	680
BssT1I	CCWWGG	2 cut(s)	47, 152
Bst1107I	GTATAC	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	1169
Bst4CI	ACNGT	2 cut(s)	424, 914
Bst6I	CTCTTC	1 cut(s)	985
BstAFI	CTTAAG	1 cut(s)	940
BstC8I	GCNNGC	2 cut(s)	456, 460
BstDEI	CTNAG	3 cut(s)	145, 873, 879
BstDSI	CCRYGG	2 cut(s)	152, 854
BstF5I	GGATG	8 cut(s)	473, 533, 593, 653, 713, 773, 833, 908
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	4 cut(s)	307, 352, 448, 1150
BstMAI	GTCTC	2 cut(s)	227, 853
BstMBI	GATC	4 cut(s)	304, 349, 445, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 1001
BstNI	CCWGG	1 cut(s)	1169
BstNSI	RCATGY	3 cut(s)	316, 462, 982
BstSCI	CCNGG	1 cut(s)	1167
BstSFI	CTRYAG	1 cut(s)	894
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	278, 523, 902
BstV2I	GAAGAC	3 cut(s)	552, 672, 732
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BstZ17I	GTATAC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	2 cut(s)	152, 854
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	8 cut(s)	473, 533, 593, 653, 713, 773, 833, 908
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	456, 460
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	536
Cfr10I	RCCGGY	1 cut(s)	255
CseI	GACGC	3 cut(s)	35, 605, 974
Csp6I	GTAC	1 cut(s)	1057
CspAI	ACCGGT	1 cut(s)	255
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	8 cut(s)	153, 313, 459, 689, 749, 979, 1008, 1151
CviJI	RGCY	8 cut(s)	73, 144, 279, 405, 893, 995, 1004, 1172
CviKI_1	RGCY	8 cut(s)	73, 144, 279, 405, 893, 995, 1004, 1172
CviQI	GTAC	1 cut(s)	1057
DdeI	CTNAG	3 cut(s)	145, 873, 879
DpnI	GATC	4 cut(s)	306, 351, 447, 1149
DpnII	GATC	4 cut(s)	304, 349, 445, 1147
Eam1104I	CTCTTC	1 cut(s)	985
EarI	CTCTTC	1 cut(s)	985
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	47, 152
Eco31I	GGTCTC	1 cut(s)	853
Eco57I	CTGAAG	6 cut(s)	501, 561, 621, 681, 741, 801
Eco88I	CYCGRG	1 cut(s)	1078
EcoRII	CCWGG	1 cut(s)	1167
EcoT14I	CCWWGG	2 cut(s)	47, 152
EcoT22I	ATGCAT	3 cut(s)	189, 464, 984
ErhI	CCWWGG	2 cut(s)	47, 152
FaeI	CATG	8 cut(s)	156, 316, 462, 692, 752, 982, 1011, 1154
FatI	CATG	8 cut(s)	152, 312, 458, 688, 748, 978, 1007, 1150
FblI	GTMKAC	3 cut(s)	606, 679, 786
Fnu4HI	GCNGC	3 cut(s)	267, 537, 891
FokI	GGATG	8 cut(s)	480, 540, 600, 660, 720, 780, 840, 915
Fsp4HI	GCNGC	3 cut(s)	267, 537, 891
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	3 cut(s)	267, 537, 891
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	3 cut(s)	35, 605, 974
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	8 cut(s)	156, 316, 462, 692, 752, 982, 1011, 1154
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	5 cut(s)	218, 685, 745, 866, 877
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	1103
Hpy166II	GTNNAC	5 cut(s)	25, 107, 607, 680, 787
Hpy188I	TCNGA	3 cut(s)	744, 876, 882
Hpy188III	TCNNGA	4 cut(s)	308, 353, 809, 1080
Hpy8I	GTNNAC	5 cut(s)	25, 107, 607, 680, 787
Hpy99I	CGWCG	2 cut(s)	599, 968
HpyAV	CCTTC	4 cut(s)	6, 172, 1026, 1128
HpyCH4III	ACNGT	2 cut(s)	424, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 1001
HpyF3I	CTNAG	3 cut(s)	145, 873, 879
Hsp92II	CATG	8 cut(s)	156, 316, 462, 692, 752, 982, 1011, 1154
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	304, 349, 445, 1147
LguI	GCTCTTC	1 cut(s)	985
LmnI	GCTCC	2 cut(s)	771, 1001
Lsp1109I	GCAGC	3 cut(s)	278, 523, 902
LweI	GCATC	3 cut(s)	196, 210, 466
MaeIII	GTNAC	4 cut(s)	418, 1091, 1121, 1157
MalI	GATC	4 cut(s)	306, 351, 447, 1149
MboI	GATC	4 cut(s)	304, 349, 445, 1147
MfeI	CAATTG	1 cut(s)	925
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	6 cut(s)	56, 98, 125, 226, 925, 1015
MlyI	GAGTC	1 cut(s)	871
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	8 cut(s)	153, 400, 444, 893, 1040, 1087, 1106, 1121
Mph1103I	ATGCAT	3 cut(s)	189, 464, 984
MseI	TTAA	3 cut(s)	273, 551, 941
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	893
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	1169
MunI	CAATTG	1 cut(s)	925
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	1 cut(s)	1169
MwoI	GCNNNNNNNGC	2 cut(s)	285, 1001
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	304, 349, 445, 1147
NlaIII	CATG	8 cut(s)	156, 316, 462, 692, 752, 982, 1011, 1154
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	418, 1091
NsiI	ATGCAT	3 cut(s)	189, 464, 984
NspI	RCATGY	3 cut(s)	316, 462, 982
PaeI	GCATGC	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	985
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	4 cut(s)	218, 685, 745, 866
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	268, 538, 892
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PscI	ACATGT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	1167
PspGI	CCWGG	1 cut(s)	1167
PspN4I	GGNNCC	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	1 cut(s)	1058
RsaNI	GTAC	1 cut(s)	1057
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	985
SaqAI	TTAA	3 cut(s)	273, 551, 941
SatI	GCNGC	3 cut(s)	267, 537, 891
Sau3AI	GATC	4 cut(s)	304, 349, 445, 1147
SchI	GAGTC	1 cut(s)	871
ScrFI	CCNGG	1 cut(s)	1169
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	3 cut(s)	196, 210, 466
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	1 cut(s)	1078
SlaI	CTCGAG	1 cut(s)	1078
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	940, 1063, 1078
SmoI	CTYRAG	3 cut(s)	940, 1063, 1078
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	6 cut(s)	56, 98, 125, 226, 925, 1015
SsiI	CCGC	2 cut(s)	157, 836
StyD4I	CCNGG	1 cut(s)	1167
StyI	CCWWGG	2 cut(s)	47, 152
TaaI	ACNGT	2 cut(s)	424, 914
TaqI	TCGA	2 cut(s)	963, 1079
TasI	AATT	6 cut(s)	56, 98, 125, 226, 925, 1015
TfiI	GAWTC	4 cut(s)	218, 685, 745, 866
Tru1I	TTAA	3 cut(s)	273, 551, 941
Tru9I	TTAA	3 cut(s)	273, 551, 941
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	418, 1091
TseI	GCWGC	3 cut(s)	266, 536, 890
Tsp45I	GTSAC	2 cut(s)	418, 1091
TspDTI	ATGAA	3 cut(s)	210, 516, 996
TspGWI	ACGGA	3 cut(s)	871, 1125, 1140
TspRI	CASTG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	940
VneI	GTGCAC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	1015
XceI	RCATGY	3 cut(s)	316, 462, 982
XhoI	CTCGAG	1 cut(s)	1078
XmiI	GTMKAC	3 cut(s)	606, 679, 786
Zsp2I	ATGCAT	3 cut(s)	189, 464, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.