Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Reverse (-)

19325163 .. 19328205

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGAAGATCTTTATGAGGAGAGGATCCCGGTTCGGAGGGGGGGGCGGGGGGGTTGGTGTTTGTTTGGGTGTGCATTCTGAAGTTATAGTAGTGGATACAATTGATAACTTGTTTAGTGCCTTATTTTCTTCCTTGACTTTAAACAAATATGCCCTCTTGATGAACCCATTAGCAAGGAGTATAGAGGAGCTTCTGCCTGTTGGACTTTCTAATAGTTTTTGGTGCTTCATTCTTTTGAGAACAGCACTTGTCATCTCTACTGTTGGTGCTGCTTTTCTTATTCCTTTCTTTGGTCTTGTGATGGCTTTAATAGGCTCTCTACTCAGCGTACTCGTGTCCGTGATAGTGCCAGCACTATGCTTCCTGAGAATAGCTGGAATGAAAGCTTCAAGGATACAGGTTGTTTCAAGTATCACAGTAGCTGCATTTGGAGTAGTTGCTGCAATCCTTGGTACCTATTCTTCAGTCTCAAAAATCGTGAAGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

165

Amino Acids

17.33

Weight (kDa)

10.04

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	37 - 156	4.8e-11	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	455
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	21, 34
AcuI	CTGAAG	2 cut(s)	102, 450
AfaI	GTAC	2 cut(s)	333, 457
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	393, 411
AluBI	AGCT	4 cut(s)	193, 377, 389, 425
AluI	AGCT	4 cut(s)	193, 377, 389, 425
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	2 cut(s)	21, 34
AlwNI	CAGNNNCTG	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	272, 425, 443
Asp718I	GGTACC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	448, 480
BauI	CACGAG	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	259, 412, 430
BccI	CCATC	1 cut(s)	298
BciVI	GTATCC	2 cut(s)	91, 390
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	475
BfuI	GTATCC	2 cut(s)	91, 390
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	3 cut(s)	273, 426, 444
BlsI	GCNGC	3 cut(s)	274, 427, 445
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	28, 457
BmrFI	CCNGG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	340, 359
BseRI	GAGGAG	2 cut(s)	34, 203
BseXI	GCAGC	3 cut(s)	259, 412, 430
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	9, 26
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	339, 360
BspLI	GGNNCC	2 cut(s)	28, 457
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	2 cut(s)	9, 26
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	451
Bst2BI	CACGAG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	265, 421
Bst6I	CTCTTC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	326, 368
BstKTI	GATC	2 cut(s)	12, 29
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	2 cut(s)	9, 26
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	259, 412, 430
BstX2I	RGATCY	2 cut(s)	9, 26
BstYI	RGATCY	2 cut(s)	9, 26
BsuI	GTATCC	2 cut(s)	91, 390
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	332, 456
CviJI	RGCY	6 cut(s)	193, 308, 318, 377, 389, 425
CviKI_1	RGCY	6 cut(s)	193, 308, 318, 377, 389, 425
CviQI	GTAC	2 cut(s)	332, 456
DdeI	CTNAG	2 cut(s)	326, 368
DpnI	GATC	2 cut(s)	11, 28
DpnII	GATC	2 cut(s)	9, 26
DraI	TTTAAA	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	102, 450
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaiI	YATR	5 cut(s)	17, 89, 153, 185, 361
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	273, 426, 444
Fsp4HI	GCNGC	3 cut(s)	273, 426, 444
GluI	GCNGC	3 cut(s)	273, 426, 444
HapII	CCGG	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	387
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	38, 82
Hpy188III	TCNNGA	3 cut(s)	160, 367, 481
HpyCH4III	ACNGT	2 cut(s)	265, 421
HpyCH4V	TGCA	3 cut(s)	76, 428, 446
HpyF3I	CTNAG	2 cut(s)	326, 368
KpnI	GGTACC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	9, 26
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	44, 213, 363, 366, 380, 386
Lsp1109I	GCAGC	3 cut(s)	259, 412, 430
MalI	GATC	2 cut(s)	11, 28
MboI	GATC	2 cut(s)	9, 26
MboII	GAAGA	3 cut(s)	19, 123, 456
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	9, 26
MluCI	AATT	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	12, 17, 32, 167, 181
MseI	TTAA	2 cut(s)	143, 311
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	9, 26
NlaIV	GGNNCC	2 cut(s)	28, 457
PctI	GAATGC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	274, 427, 445
PspN4I	GGNNCC	2 cut(s)	28, 457
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	9, 26
RsaI	GTAC	2 cut(s)	333, 457
RsaNI	GTAC	2 cut(s)	332, 456
SaqAI	TTAA	2 cut(s)	143, 311
SatI	GCNGC	3 cut(s)	273, 426, 444
Sau3AI	GATC	2 cut(s)	9, 26
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	6 cut(s)	195, 379, 391, 405, 427, 461
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	265, 421
TasI	AATT	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	143, 311
Tru9I	TTAA	2 cut(s)	143, 311
TseI	GCWGC	3 cut(s)	272, 425, 443
TspDTI	ATGAA	3 cut(s)	179, 220, 398
TspGWI	ACGGA	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.