Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Reverse (-)

48565222 .. 48571937

Gene Structure 6716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGCTCAGCGGAAAGAATCCGATCCCATTTTGTTCGTGAGTGATGACCAACTGAGCGATGATATTGAGGACAACAAGATCGAGAGTGGCAGCAGCAGCAGTTCTGGTAGTGACAATGCTCATCGTCCTCAGATGTCCTCCCCCGGTAATAGTTTTTCTTCTCAGAAATGGCCGCAGAGTTACAGGGAGACACTGGATTCTTACGTTATTGCAGCATCACCAAATTTTGGTAATCTTGGATTTGTTCCACCTGGTAGTAGCTATTCCTATTCCAGCTTTAAGAGTAGTTCTGATGTGGGTTCAAAGGCTCCGTTATTGTCTGCCGACGAACGTGAACGCTTTTCTCAGAATTGGGACAAAACCTCAAGAGCCCAATCATTATGGTCTCAAAGGTCGACACTAAATAAGCAGGTCACGGGAGAATTGCCTGCTGCCTACGGATGTAGCCTGACTCAAACCGTATTCAATGGAATTAATGTAATGGCGGGAGTTGGGCTTCTGTCTACACCTTATACAGTGAAAGAAGCTGGCTGGGCAAGTATTGTGGTGCTACTTCTTTTTGCAATCGTGTGTTGTTACACAGCCATACTCATGAGATTCTGCTTTGAGACCAATAAAGGAATTACAAGTTACCCAGATTTAGGAGAAGCTGCATTCGGAAGATATGGGCGTATTTTCATATCTATCATTTTGTATGCAGAACTCTATTCTTACTGTGTGGAATTCATCATTTTGGAAGGAGATAATCTCAGCAGGCTATTCCCAGGGACATCCTTGAATTGGGCTGGTTTTCACTTGGACTCCTTGCACTTATTTGGAATTTTAACTGCCTTGATTGTTCTACCAACTGTTTGGTTGAAGGATCTTCGTTTGATTTCATTCCTTTCAGCTGGTGGGGTCATTGTTACAATTTTGATCGTTCTATGTGTAATTTTACTTGGTACAACTGGTGGGATTGGATTTCATCAAACTGCTCAAGTAGTGAACATTAATGGAATTCCACTTGTAATTGGTGTATATGGGTTTTGCTTTGCTGGGCATACTGTGTTTCCCAATATTTACCAATCCATGGCAGACAAAAAACAATTTACTAAAGCCGTGATTATATGCTTTCTATTGGCCGCTCTTTTATATGGCAGTGTTGCAGTCATGGGATTTCTCATGTTTGGTCAAAGCACATTGTCTCAGATAACTTTAAATATGCCACCACATGCACTTGCTTCCAAAGTTGCGTTGTGGACAACTTGGATACAATCAGATAATTTGGTAGCCTTATTTTCTTCCTTGACACTGAACAAATATGCCCTCCTGATGAACCCATTAGCAAGGAGTATAGAGGAGCTTCTGCCTGTTGGACTTTCTAATAGTTTTTGGTGTTTCGTTCTTTTAAGAACAGCACTTGTCATCTCTACTGTTGGTGCTGCTTTTCTTATTCCTTTCTTTGGTCTTGTCATGTCTTTAATAGGCTCTCTACTCAGCGTACTCGTGTCGGTGATAGTGCCAGCACTATGCTTCCTGAAAATAGCAGGAATGAAAGCTTCGAGGATACAGGTTGTTTCAAGTATCACTGTAGCTGCATTGGGAGTTGTTGCTGGAATCCTTGGTACATATTCTTCAGTATCAAAAATCGTGAAGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

547

Amino Acids

59.11

Weight (kDa)

7.96

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	149 - 539	3.2e-55	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	160 - 428	1.4e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	2 cut(s)	227, 1069
AccBSI	CCGCTC	1 cut(s)	1124
AccI	GTMKAC	2 cut(s)	395, 503
AciI	CCGC	4 cut(s)	10, 173, 485, 1122
AclWI	GGATC	2 cut(s)	17, 870
AcoI	YGGCCR	2 cut(s)	170, 1119
AcsI	RAATTY	4 cut(s)	223, 722, 819, 996
AcuI	CTGAAG	1 cut(s)	1599
AfaI	GTAC	3 cut(s)	943, 1482, 1606
AfiI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1442
AgsI	TTSAA	5 cut(s)	303, 466, 778, 859, 1560
AjnI	CCWGG	2 cut(s)	250, 763
AluBI	AGCT	8 cut(s)	261, 276, 527, 650, 890, 1342, 1538, 1574
AluI	AGCT	8 cut(s)	261, 276, 527, 650, 890, 1342, 1538, 1574
Alw26I	GTCTC	4 cut(s)	182, 390, 602, 1188
AlwI	GGATC	2 cut(s)	17, 870
AoxI	GGCC	2 cut(s)	170, 1119
ApeKI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1421, 1574
ApoI	RAATTY	4 cut(s)	223, 722, 819, 996
AseI	ATTAAT	2 cut(s)	474, 990
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	210, 1504
BanII	GRGCYC	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	1597, 1629
BauI	CACGAG	1 cut(s)	1484
BbvI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1408, 1561
BceAI	ACGGC	1 cut(s)	1082
BciT130I	CCWGG	2 cut(s)	252, 765
BciVI	GTATCC	2 cut(s)	1242, 1539
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	182, 390, 602, 1188
BfmI	CTRYAG	1 cut(s)	1569
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	2 cut(s)	1242, 1539
BlpI	GCTNAGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	144, 252, 765
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	144, 252, 765
BmsI	GCATC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	349, 960
BpuMI	CCSGG	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	390, 602
BsaJI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1600
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1442
Bse1I	ACTGG	2 cut(s)	198, 952
BseBI	CCWGG	2 cut(s)	252, 765
BseDI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1600
BseGI	GGATG	2 cut(s)	446, 770
BseLI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1442
BseMII	CTCAG	8 cut(s)	20, 44, 143, 176, 359, 763, 1199, 1489
BseNI	ACTGG	2 cut(s)	198, 952
BseRI	GAGGAG	1 cut(s)	1352
BseXI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1408, 1561
BseYI	CCCAGC	2 cut(s)	531, 1034
BshFI	GGCC	2 cut(s)	172, 1121
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	368, 781
BslI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1442
BsmAI	GTCTC	4 cut(s)	182, 390, 602, 1188
BsmFI	GGGAC	2 cut(s)	368, 781
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	172, 1121
Bso31I	GGTCTC	2 cut(s)	390, 602
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	22, 78, 862, 915
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	4 cut(s)	10, 173, 485, 1122
BspANI	GGCC	2 cut(s)	172, 1121
BspCNI	CTCAG	8 cut(s)	19, 45, 142, 175, 358, 762, 1198, 1488
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	17, 870
BspTNI	GGTCTC	2 cut(s)	390, 602
BsrBI	CCGCTC	1 cut(s)	1124
BsrI	ACTGG	2 cut(s)	198, 952
BssECI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1600
BssMI	GATC	4 cut(s)	22, 78, 862, 915
BssSI	CACGAG	1 cut(s)	1484
BssT1I	CCWWGG	2 cut(s)	1068, 1600
Bst2BI	CACGAG	1 cut(s)	1484
Bst2UI	CCWGG	2 cut(s)	252, 765
Bst4CI	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1414, 1570
Bst6I	CTCTTC	1 cut(s)	1628
BstC8I	GCNNGC	4 cut(s)	429, 529, 755, 1503
BstDEI	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1475
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	2 cut(s)	446, 770
BstKTI	GATC	4 cut(s)	25, 81, 865, 918
BstMAI	GTCTC	4 cut(s)	182, 390, 602, 1188
BstMBI	GATC	4 cut(s)	22, 78, 862, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 533
BstNI	CCWGG	2 cut(s)	252, 765
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	3 cut(s)	142, 250, 763
BstSFI	CTRYAG	1 cut(s)	1569
BstV1I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1408, 1561
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	862
BsuI	GTATCC	2 cut(s)	1242, 1539
BsuRI	GGCC	2 cut(s)	172, 1121
BtgI	CCRYGG	1 cut(s)	1068
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	446, 770
BtsI	GCAGTG	1 cut(s)	1144
BtsIMutI	CAGTG	5 cut(s)	191, 522, 1144, 1289, 1566
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	4 cut(s)	429, 529, 755, 1503
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	942, 1481, 1605
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	6 cut(s)	592, 1069, 1150, 1162, 1211, 1453
CviQI	GTAC	3 cut(s)	942, 1481, 1605
DdeI	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1475
DpnI	GATC	4 cut(s)	24, 80, 864, 917
DpnII	GATC	4 cut(s)	22, 78, 862, 915
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	2 cut(s)	170, 1119
Eam1104I	CTCTTC	1 cut(s)	1628
EarI	CTCTTC	1 cut(s)	1628
Eco130I	CCWWGG	2 cut(s)	1068, 1600
Eco24I	GRGCYC	1 cut(s)	373
Eco31I	GGTCTC	2 cut(s)	390, 602
Eco57I	CTGAAG	1 cut(s)	1599
EcoRI	GAATTC	2 cut(s)	722, 996
EcoRII	CCWGG	2 cut(s)	250, 763
EcoT14I	CCWWGG	2 cut(s)	1068, 1600
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	1068, 1600
FaeI	CATG	6 cut(s)	595, 1072, 1153, 1165, 1214, 1456
FaqI	GGGAC	2 cut(s)	368, 781
FatI	CATG	6 cut(s)	591, 1068, 1149, 1161, 1210, 1452
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	395, 503
FokI	GGATG	2 cut(s)	453, 757
FriOI	GRGCYC	1 cut(s)	373
GsaI	CCCAGC	2 cut(s)	535, 1038
HaeIII	GGCC	2 cut(s)	172, 1121
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	6 cut(s)	595, 1072, 1153, 1165, 1214, 1456
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	1536
HinfI	GANTC	6 cut(s)	17, 197, 451, 597, 800, 1596
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	210, 1504
Hpy166II	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy188I	TCNGA	8 cut(s)	22, 132, 165, 292, 348, 659, 1188, 1258
Hpy188III	TCNNGA	7 cut(s)	37, 82, 366, 592, 1309, 1516, 1630
Hpy8I	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	731, 853
HpyCH4III	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1414, 1570
HpyCH4IV	ACGT	2 cut(s)	204, 331
HpyCH4V	TGCA	8 cut(s)	212, 563, 653, 698, 808, 1145, 1214, 1577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 533
HpyF3I	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1475
HpySE526I	ACGT	2 cut(s)	204, 331
Hsp92II	CATG	6 cut(s)	595, 1072, 1153, 1165, 1214, 1456
Kzo9I	GATC	4 cut(s)	22, 78, 862, 915
LmnI	GCTCC	2 cut(s)	313, 1339
Lsp1109I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1408, 1561
LweI	GCATC	1 cut(s)	224
MabI	ACCWGGT	1 cut(s)	250
MaeII	ACGT	2 cut(s)	204, 331
MaeIII	GTNAC	6 cut(s)	110, 179, 412, 575, 629, 904
MalI	GATC	4 cut(s)	24, 80, 864, 917
MbiI	CCGCTC	1 cut(s)	1124
MboI	GATC	4 cut(s)	22, 78, 862, 915
MboII	GAAGA	5 cut(s)	150, 672, 857, 1272, 1605
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	445, 794
MmeI	TCCRAC	1 cut(s)	1333
MnlI	CCTC	7 cut(s)	61, 138, 148, 373, 1316, 1330, 1536
MseI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1388, 1460
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	2 cut(s)	10, 890
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	3 cut(s)	144, 252, 765
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	2 cut(s)	252, 765
MwoI	GCNNNNNNNGC	2 cut(s)	96, 533
NciI	CCSGG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1068
NdeII	GATC	4 cut(s)	22, 78, 862, 915
NlaIII	CATG	6 cut(s)	595, 1072, 1153, 1165, 1214, 1456
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	110, 412
NspI	RCATGY	1 cut(s)	1214
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	764
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	4 cut(s)	17, 197, 597, 1596
PflMI	CCANNNNNTGG	2 cut(s)	227, 1069
PleI	GAGTC	2 cut(s)	445, 794
PpsI	GAGTC	2 cut(s)	445, 794
PshBI	ATTAAT	2 cut(s)	474, 990
Psp6I	CCWGG	2 cut(s)	250, 763
PspFI	CCCAGC	2 cut(s)	531, 1034
PspGI	CCWGG	2 cut(s)	250, 763
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	3 cut(s)	943, 1482, 1606
RsaNI	GTAC	3 cut(s)	942, 1481, 1605
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1388, 1460
Sau3AI	GATC	4 cut(s)	22, 78, 862, 915
SchI	GAGTC	2 cut(s)	445, 794
ScrFI	CCNGG	3 cut(s)	144, 252, 765
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	1569
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	364, 975
SmoI	CTYRAG	2 cut(s)	364, 975
SsiI	CCGC	4 cut(s)	10, 173, 485, 1122
SspI	AATATT	1 cut(s)	1057
StyD4I	CCNGG	3 cut(s)	142, 250, 763
StyI	CCWWGG	2 cut(s)	1068, 1600
TaaI	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1414, 1570
TaiI	ACGT	2 cut(s)	207, 334
TaqI	TCGA	3 cut(s)	81, 395, 1541
TauI	GCSGC	2 cut(s)	175, 1124
TfiI	GAWTC	4 cut(s)	17, 197, 597, 1596
Tru1I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1388, 1460
Tru9I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1388, 1460
TscAI	CASTG	5 cut(s)	198, 522, 1144, 1296, 1573
TseFI	GTSAC	2 cut(s)	110, 412
TseI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1421, 1574
Tsp45I	GTSAC	2 cut(s)	110, 412
TspDTI	ATGAA	6 cut(s)	667, 715, 867, 953, 1328, 1547
TspGWI	ACGGA	2 cut(s)	300, 453
TspRI	CASTG	5 cut(s)	198, 522, 1144, 1296, 1573
Van91I	CCANNNNNTGG	2 cut(s)	227, 1069
VspI	ATTAAT	2 cut(s)	474, 990
XapI	RAATTY	4 cut(s)	223, 722, 819, 996
XceI	RCATGY	1 cut(s)	1214
XmiI	GTMKAC	2 cut(s)	395, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.