Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002643.1

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Forward (+)

30040 .. 34302

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002643.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggctcagcagaaagaatccgatcccattttgttcgtgagtgatgaccaactgagcgatgatattgaggacaataagatcgagagtggcagcagcagcagttctgctagtgacaatgctcatcatcctcagatgtcgtcccctggtaatagtttttcttctcagatatggccgcagagttacagggagacactggattcttacgttattgcagcatcaccaaattttggtaatcttggatttgttccacctggtagtagctattcctattccagctttaagagtagttccgatgtgggttcaaaggctccgttattgtctgccgacgaacgtgaacgcttttctcagaattgggacaaaacctctagaacccaatcattatggtcacaaaggtcgacactaaataaacaggtcacgggagaattgcctgctgcctatggatgtagcttgactcaaaccgtattcaatggaattaatgtaatggcgggagttgggcttctgtctacaccttatacagtgaaagaagctggctgggcaagtattgtggtgctacttctttttgcaatcgtgtgttgttacacagccatactcatgagattctgctttgagaccaataaaggaattacgagttacccagatttaggagaagctgcatttggaagatatgggcgtattttcatatctatcattttgtacgcagaactctattcttactgtgtagaattcatcattttggaaggagataatctcagcaggctattcccagggacatccttgaattgggctggttttcacttggactccttgcacttatttggaattttaactgccttgattgttctaccaactgtttggttgaaggatcttcgtttgatttcattcctttcagctggtggggtcattgttacaattttgatcgttctatgtgtaattttacttggtacaactggtgggattggatttcatcaaactgctaaagtagtgaacattaatggaattccacttgtaattggtgtatatgggttttgctttgctgggcatactgtgtttccaaatatttaccaatccatggcagacaaaaaacaatttactaaagccgtgattatatgctttctattggctgctctgttatatggaagtgttgcagtcatgggatttctaatgtttggtcaaagcacattgtctcagataactttaaatatgccaccacatgcacttgcttccaaagttgcgttgtggacaactaatagcacttgtcatctctactgttggtgctgcttttcttattcctttctttggtcttgtgatgtctttaataggctctctactcagcgtactcgtgtcggtgatagtgccagcactatgcttcctgaaaatagcaggaatgaaagcttcgaggatacaggtaaggcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

472

Amino Acids

51.63

Weight (kDa)

5.77

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	227, 1069
AccI	GTMKAC	2 cut(s)	395, 503
AciI	CCGC	2 cut(s)	173, 485
AclWI	GGATC	2 cut(s)	17, 870
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	4 cut(s)	223, 722, 819, 996
AfaI	GTAC	3 cut(s)	695, 943, 1336
AfiI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1296
AgsI	TTSAA	4 cut(s)	303, 466, 778, 859
AjnI	CCWGG	3 cut(s)	142, 250, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	7 cut(s)	261, 276, 447, 527, 650, 890, 1392
AluI	AGCT	7 cut(s)	261, 276, 447, 527, 650, 890, 1392
Alw26I	GTCTC	3 cut(s)	182, 602, 1188
AlwI	GGATC	2 cut(s)	17, 870
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1121, 1275
ApoI	RAATTY	4 cut(s)	223, 722, 819, 996
AseI	ATTAAT	2 cut(s)	474, 990
AsuHPI	GGTGA	2 cut(s)	210, 1358
BauI	CACGAG	1 cut(s)	1338
BbvI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1108, 1262
BceAI	ACGGC	1 cut(s)	1082
BciT130I	CCWGG	3 cut(s)	144, 252, 765
BciVI	GTATCC	1 cut(s)	1393
BcoDI	GTCTC	3 cut(s)	182, 602, 1188
BfaI	CTAG	2 cut(s)	108, 366
BfuI	GTATCC	1 cut(s)	1393
BisI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1122, 1276
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	9 cut(s)	92, 95, 98, 174, 214, 433, 652, 1123, 1277
Bme1390I	CCNGG	3 cut(s)	144, 252, 765
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	144, 252, 765
BmsI	GCATC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	4 cut(s)	142, 763, 764, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1296
Bse1I	ACTGG	2 cut(s)	198, 952
BseBI	CCWGG	3 cut(s)	144, 252, 765
BseDI	CCNNGG	4 cut(s)	142, 763, 764, 1068
BseGI	GGATG	3 cut(s)	124, 446, 770
BseLI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1296
BseMII	CTCAG	8 cut(s)	20, 44, 143, 176, 359, 763, 1199, 1343
BseNI	ACTGG	2 cut(s)	198, 952
BseXI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1108, 1262
BseYI	CCCAGC	2 cut(s)	531, 1034
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	3 cut(s)	124, 368, 781
BslI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1296
BsmAI	GTCTC	3 cut(s)	182, 602, 1188
BsmFI	GGGAC	3 cut(s)	124, 368, 781
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	22, 78, 862, 915
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	2 cut(s)	173, 485
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	8 cut(s)	19, 45, 142, 175, 358, 762, 1198, 1342
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	17, 870
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	198, 952
BssECI	CCNNGG	4 cut(s)	142, 763, 764, 1068
BssMI	GATC	4 cut(s)	22, 78, 862, 915
BssSI	CACGAG	1 cut(s)	1338
BssT1I	CCWWGG	1 cut(s)	1068
Bst2BI	CACGAG	1 cut(s)	1338
Bst2UI	CCWGG	3 cut(s)	144, 252, 765
Bst4CI	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1268
BstC8I	GCNNGC	4 cut(s)	429, 529, 755, 1357
BstDEI	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1329
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	3 cut(s)	124, 446, 770
BstKTI	GATC	4 cut(s)	25, 81, 865, 918
BstMAI	GTCTC	3 cut(s)	182, 602, 1188
BstMBI	GATC	4 cut(s)	22, 78, 862, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 533
BstNI	CCWGG	3 cut(s)	144, 252, 765
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	3 cut(s)	142, 250, 763
BstV1I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1108, 1262
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	1393
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	1068
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	124, 446, 770
BtsIMutI	CAGTG	2 cut(s)	191, 522
Cac8I	GCNNGC	4 cut(s)	429, 529, 755, 1357
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	694, 942, 1335
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	4 cut(s)	592, 1069, 1150, 1211
CviQI	GTAC	3 cut(s)	694, 942, 1335
DdeI	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1329
DpnI	GATC	4 cut(s)	24, 80, 864, 917
DpnII	GATC	4 cut(s)	22, 78, 862, 915
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	1068
Eco31I	GGTCTC	1 cut(s)	602
EcoRI	GAATTC	2 cut(s)	722, 996
EcoRII	CCWGG	3 cut(s)	142, 250, 763
EcoT14I	CCWWGG	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	1068
FaeI	CATG	4 cut(s)	595, 1072, 1153, 1214
FaqI	GGGAC	3 cut(s)	124, 368, 781
FatI	CATG	4 cut(s)	591, 1068, 1149, 1210
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	395, 503
Fnu4HI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1122, 1276
FokI	GGATG	3 cut(s)	111, 453, 757
Fsp4HI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1122, 1276
FspBI	CTAG	2 cut(s)	108, 366
GluI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1122, 1276
GsaI	CCCAGC	2 cut(s)	535, 1038
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	595, 1072, 1153, 1214
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	1390
HinfI	GANTC	5 cut(s)	17, 197, 451, 597, 800
HphI	GGTGA	2 cut(s)	210, 1358
Hpy166II	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy188I	TCNGA	6 cut(s)	22, 132, 165, 292, 348, 1188
Hpy188III	TCNNGA	5 cut(s)	37, 82, 366, 592, 1370
Hpy8I	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	731, 853
HpyCH4III	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1268
HpyCH4IV	ACGT	2 cut(s)	204, 331
HpyCH4V	TGCA	6 cut(s)	212, 563, 653, 808, 1145, 1214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 533
HpyF3I	CTNAG	8 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1329
HpySE526I	ACGT	2 cut(s)	204, 331
Hsp92II	CATG	4 cut(s)	595, 1072, 1153, 1214
Kzo9I	GATC	4 cut(s)	22, 78, 862, 915
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1108, 1262
LweI	GCATC	1 cut(s)	224
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	2 cut(s)	108, 366
MaeII	ACGT	2 cut(s)	204, 331
MaeIII	GTNAC	7 cut(s)	110, 179, 384, 412, 575, 629, 904
MalI	GATC	4 cut(s)	24, 80, 864, 917
MboI	GATC	4 cut(s)	22, 78, 862, 915
MboII	GAAGA	3 cut(s)	150, 672, 857
MflI	RGATCY	1 cut(s)	862
MlyI	GAGTC	2 cut(s)	445, 794
MnlI	CCTC	4 cut(s)	61, 138, 373, 1390
MseI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1314, 1417
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	3 cut(s)	144, 252, 765
MvaI	CCWGG	3 cut(s)	144, 252, 765
MwoI	GCNNNNNNNGC	2 cut(s)	96, 533
NcoI	CCATGG	1 cut(s)	1068
NdeII	GATC	4 cut(s)	22, 78, 862, 915
NlaIII	CATG	4 cut(s)	595, 1072, 1153, 1214
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	110, 384, 412
NspI	RCATGY	1 cut(s)	1214
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	17, 197, 597
PflMI	CCANNNNNTGG	2 cut(s)	227, 1069
PkrI	GCNGC	9 cut(s)	92, 95, 98, 174, 214, 433, 652, 1123, 1277
PleI	GAGTC	2 cut(s)	445, 794
PpsI	GAGTC	2 cut(s)	445, 794
PshBI	ATTAAT	2 cut(s)	474, 990
Psp6I	CCWGG	3 cut(s)	142, 250, 763
PspFI	CCCAGC	2 cut(s)	531, 1034
PspGI	CCWGG	3 cut(s)	142, 250, 763
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	3 cut(s)	695, 943, 1336
RsaNI	GTAC	3 cut(s)	694, 942, 1335
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1314, 1417
SatI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1122, 1276
Sau3AI	GATC	4 cut(s)	22, 78, 862, 915
SchI	GAGTC	2 cut(s)	445, 794
ScrFI	CCNGG	3 cut(s)	144, 252, 765
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	590
SsiI	CCGC	2 cut(s)	173, 485
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	2 cut(s)	108, 366
StyD4I	CCNGG	3 cut(s)	142, 250, 763
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1268
TaiI	ACGT	2 cut(s)	207, 334
TaqI	TCGA	3 cut(s)	81, 395, 1395
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	3 cut(s)	17, 197, 597
Tru1I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1314, 1417
Tru9I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1314, 1417
TscAI	CASTG	2 cut(s)	198, 522
TseFI	GTSAC	3 cut(s)	110, 384, 412
TseI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1121, 1275
Tsp45I	GTSAC	3 cut(s)	110, 384, 412
TspDTI	ATGAA	5 cut(s)	667, 715, 867, 953, 1401
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	198, 522
Van91I	CCANNNNNTGG	2 cut(s)	227, 1069
VspI	ATTAAT	2 cut(s)	474, 990
XapI	RAATTY	4 cut(s)	223, 722, 819, 996
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	1 cut(s)	1214
XmiI	GTMKAC	2 cut(s)	395, 503
XspI	CTAG	2 cut(s)	108, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.