Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Forward (+)

44876562 .. 44881617

Gene Structure 5056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCTCAGCAGAAAGAATCCGATCCCATTTTGTTCGTGAGTGATGACCAACTGAGCGATGATGATATTGAGGACAACAAGATCGAGAGTGGCAGCAGCAGCAGTTCTGCTAGTGAAAATGCTCATCGTCCTCAGATGTCGTCCCCTGGTAATAGTTTTTCTTCTCAGATATGGCCGCAGAGTTACAGGGAGACACTGGATTCTTACGTTATTGCAGCATCACCAAATTTTGGTAATCTTGGATTTGTTCCACCTGGTAGTAGCTATTCCTATTCCAGCTTTAAGAGTAGTTCCGATGTGGGTTCAAAGGCTCCGTTATTGTCTGCCGACGAACGTGAACGCTTTTCTCAGAATTGGGACAAAACCTCTAGAACCCAATCATTATGGTCACAAAGGTCGACACTAAATAAACAGGTCACGGGAGAATTGCCTGCTGCCCATAGTAGCTTGACTCAAACCGTATTCAATGGAATTAATGTAATGGCGGGAGTTGGGCTTCTGTCTACACCTTATACAGTGAAGGAAGCTGGCTGGGCAAGTATTGTGGTGCTACTTCTTTTTGCAATTGTGTGTTGTTACACAGCCATACTCATGAGATTCTGCTTTGAGACCAATAAAGGAATTACGAGTTACCCAGATTTAGGAGAAGCTGCATTTGGAAGATATGGGCGTATTTTCATATCTATCATTTTGTACGCAGAACTCTATTCTTACTGTGTAGAATTCATCATTTTGGAAGGAGATAATCTCAGCAGGCTATTCCCAGGGACATCCTTGAATTGGGCTGGTTTTCACTTGGACTCCTTGCACTTATTTGGAATTTTAACTGCCTTGATTGTTCTACCAACTGTTTGGTTGAAGGATCTTTGTTTGATTTCATTCCTTTCAGCTGGTGGGGTCATTGTTACAATTTTGATCGTTCTATGTGTAATTTTACTTGGTACAACTGGTGGGATTGGATTTCATCAAACTGCTCAAGTAGTGAACATTAATGGAATTCCACTTGTAATTGGTGTATATGGGTTTTGCTTTGCTGGGCATACTGTGTTTCCAAATATTTACCAATCCATGGCAGACAAAAAACAATTTACTAAAGCCGTGATTATATGCTTTCTATTGGCTGCTCTGTTATATGGCAGTGTTGCAGTCATGGGATTTCTAATGTTTGGTCAAAGCACATTGTCTCAGATAACTTTAAATATGCCACCACATGCACTTGCTTCCAAAGTTGCGTTGTGGACAACTGTTATCAACCCCTTGAGCAAATATCCATTTATCTGTTATGTTTGTGTGTGTTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

434

Amino Acids

47.31

Weight (kDa)

5.64

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	148 - 432	1.9e-44	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	159 - 398	6.4e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	230, 1069
AccI	GTMKAC	2 cut(s)	398, 503
AciI	CCGC	2 cut(s)	176, 485
AclWI	GGATC	2 cut(s)	17, 870
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	226, 722, 819, 996
AfaI	GTAC	2 cut(s)	695, 943
AfiI	CCNNNNNNNGG	4 cut(s)	230, 641, 780, 1069
AgsI	TTSAA	4 cut(s)	306, 466, 778, 859
AjnI	CCWGG	3 cut(s)	145, 253, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	6 cut(s)	264, 279, 447, 527, 650, 890
AluI	AGCT	6 cut(s)	264, 279, 447, 527, 650, 890
Alw26I	GTCTC	3 cut(s)	185, 602, 1188
AlwI	GGATC	2 cut(s)	17, 870
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	7 cut(s)	93, 96, 99, 215, 434, 650, 1121
ApoI	RAATTY	4 cut(s)	226, 722, 819, 996
AseI	ATTAAT	2 cut(s)	474, 990
AsuHPI	GGTGA	1 cut(s)	213
BbvI	GCAGC	7 cut(s)	105, 108, 111, 227, 421, 637, 1108
BceAI	ACGGC	1 cut(s)	1082
BciT130I	CCWGG	3 cut(s)	147, 255, 765
BcoDI	GTCTC	3 cut(s)	185, 602, 1188
BfaI	CTAG	2 cut(s)	111, 369
BisI	GCNGC	8 cut(s)	94, 97, 100, 176, 216, 435, 651, 1122
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	8 cut(s)	95, 98, 101, 177, 217, 436, 652, 1123
Bme1390I	CCNGG	3 cut(s)	147, 255, 765
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	147, 255, 765
BmsI	GCATC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	960, 1279
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	4 cut(s)	145, 763, 764, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 641, 780, 1069
Bse1I	ACTGG	2 cut(s)	201, 952
BseBI	CCWGG	3 cut(s)	147, 255, 765
BseDI	CCNNGG	4 cut(s)	145, 763, 764, 1068
BseGI	GGATG	1 cut(s)	770
BseLI	CCNNNNNNNGG	4 cut(s)	230, 641, 780, 1069
BseMII	CTCAG	7 cut(s)	20, 44, 146, 179, 362, 763, 1199
BseNI	ACTGG	2 cut(s)	201, 952
BseXI	GCAGC	7 cut(s)	105, 108, 111, 227, 421, 637, 1108
BseYI	CCCAGC	2 cut(s)	531, 1034
BshFI	GGCC	1 cut(s)	175
BslFI	GGGAC	3 cut(s)	127, 371, 781
BslI	CCNNNNNNNGG	4 cut(s)	230, 641, 780, 1069
BsmAI	GTCTC	3 cut(s)	185, 602, 1188
BsmFI	GGGAC	3 cut(s)	127, 371, 781
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	22, 81, 862, 915
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	2 cut(s)	176, 485
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	7 cut(s)	19, 45, 145, 178, 361, 762, 1198
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	17, 870
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	201, 952
BssECI	CCNNGG	4 cut(s)	145, 763, 764, 1068
BssMI	GATC	4 cut(s)	22, 81, 862, 915
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	3 cut(s)	147, 255, 765
Bst4CI	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1246
BstC8I	GCNNGC	3 cut(s)	432, 529, 755
BstDEI	CTNAG	7 cut(s)	6, 53, 132, 165, 348, 749, 1185
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	1 cut(s)	770
BstKTI	GATC	4 cut(s)	25, 84, 865, 918
BstMAI	GTCTC	3 cut(s)	185, 602, 1188
BstMBI	GATC	4 cut(s)	22, 81, 862, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 533
BstNI	CCWGG	3 cut(s)	147, 255, 765
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	3 cut(s)	145, 253, 763
BstV1I	GCAGC	7 cut(s)	105, 108, 111, 227, 421, 637, 1108
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	1068
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	770
BtsI	GCAGTG	1 cut(s)	1144
BtsIMutI	CAGTG	3 cut(s)	194, 522, 1144
Cac8I	GCNNGC	3 cut(s)	432, 529, 755
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	694, 942
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	4 cut(s)	592, 1069, 1150, 1211
CviQI	GTAC	2 cut(s)	694, 942
DdeI	CTNAG	7 cut(s)	6, 53, 132, 165, 348, 749, 1185
DpnI	GATC	4 cut(s)	24, 83, 864, 917
DpnII	GATC	4 cut(s)	22, 81, 862, 915
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	1068
Eco31I	GGTCTC	1 cut(s)	602
EcoRI	GAATTC	2 cut(s)	722, 996
EcoRII	CCWGG	3 cut(s)	145, 253, 763
EcoT14I	CCWWGG	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	1068
FaeI	CATG	4 cut(s)	595, 1072, 1153, 1214
FaqI	GGGAC	3 cut(s)	127, 371, 781
FatI	CATG	4 cut(s)	591, 1068, 1149, 1210
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	398, 503
Fnu4HI	GCNGC	8 cut(s)	94, 97, 100, 176, 216, 435, 651, 1122
FokI	GGATG	1 cut(s)	757
Fsp4HI	GCNGC	8 cut(s)	94, 97, 100, 176, 216, 435, 651, 1122
FspBI	CTAG	2 cut(s)	111, 369
GluI	GCNGC	8 cut(s)	94, 97, 100, 176, 216, 435, 651, 1122
GsaI	CCCAGC	2 cut(s)	535, 1038
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	595, 1072, 1153, 1214
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	5 cut(s)	17, 200, 451, 597, 800
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	5 cut(s)	338, 399, 504, 985, 1239
Hpy188I	TCNGA	6 cut(s)	22, 135, 168, 295, 351, 1188
Hpy188III	TCNNGA	4 cut(s)	37, 85, 369, 592
Hpy8I	GTNNAC	5 cut(s)	338, 399, 504, 985, 1239
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	514, 731, 853
HpyCH4III	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1246
HpyCH4IV	ACGT	2 cut(s)	207, 334
HpyCH4V	TGCA	6 cut(s)	215, 563, 653, 808, 1145, 1214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 533
HpyF3I	CTNAG	7 cut(s)	6, 53, 132, 165, 348, 749, 1185
HpySE526I	ACGT	2 cut(s)	207, 334
Hsp92II	CATG	4 cut(s)	595, 1072, 1153, 1214
Kzo9I	GATC	4 cut(s)	22, 81, 862, 915
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	7 cut(s)	105, 108, 111, 227, 421, 637, 1108
LweI	GCATC	1 cut(s)	227
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	2 cut(s)	111, 369
MaeII	ACGT	2 cut(s)	207, 334
MaeIII	GTNAC	7 cut(s)	182, 387, 415, 575, 629, 904, 1295
MalI	GATC	4 cut(s)	24, 83, 864, 917
MboI	GATC	4 cut(s)	22, 81, 862, 915
MboII	GAAGA	2 cut(s)	153, 672
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	862
MlyI	GAGTC	2 cut(s)	445, 794
MnlI	CCTC	3 cut(s)	64, 141, 376
MseI	TTAA	5 cut(s)	282, 474, 824, 990, 1196
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	3 cut(s)	147, 255, 765
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	3 cut(s)	147, 255, 765
MwoI	GCNNNNNNNGC	2 cut(s)	99, 533
NcoI	CCATGG	1 cut(s)	1068
NdeII	GATC	4 cut(s)	22, 81, 862, 915
NlaIII	CATG	4 cut(s)	595, 1072, 1153, 1214
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	387, 415
NspI	RCATGY	1 cut(s)	1214
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	17, 200, 597
PflMI	CCANNNNNTGG	2 cut(s)	230, 1069
PkrI	GCNGC	8 cut(s)	95, 98, 101, 177, 217, 436, 652, 1123
PleI	GAGTC	2 cut(s)	445, 794
PpsI	GAGTC	2 cut(s)	445, 794
PshBI	ATTAAT	2 cut(s)	474, 990
Psp6I	CCWGG	3 cut(s)	145, 253, 763
PspFI	CCCAGC	2 cut(s)	531, 1034
PspGI	CCWGG	3 cut(s)	145, 253, 763
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	695, 943
RsaNI	GTAC	2 cut(s)	694, 942
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	282, 474, 824, 990, 1196
SatI	GCNGC	8 cut(s)	94, 97, 100, 176, 216, 435, 651, 1122
Sau3AI	GATC	4 cut(s)	22, 81, 862, 915
SchI	GAGTC	2 cut(s)	445, 794
ScrFI	CCNGG	3 cut(s)	147, 255, 765
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	975, 1258
SmoI	CTYRAG	2 cut(s)	975, 1258
SsiI	CCGC	2 cut(s)	176, 485
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	2 cut(s)	111, 369
StyD4I	CCNGG	3 cut(s)	145, 253, 763
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	6 cut(s)	460, 517, 716, 850, 1045, 1246
TaiI	ACGT	2 cut(s)	210, 337
TaqI	TCGA	2 cut(s)	84, 398
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	3 cut(s)	17, 200, 597
Tru1I	TTAA	5 cut(s)	282, 474, 824, 990, 1196
Tru9I	TTAA	5 cut(s)	282, 474, 824, 990, 1196
TscAI	CASTG	3 cut(s)	201, 522, 1144
TseFI	GTSAC	2 cut(s)	387, 415
TseI	GCWGC	7 cut(s)	93, 96, 99, 215, 434, 650, 1121
Tsp45I	GTSAC	2 cut(s)	387, 415
TspDTI	ATGAA	4 cut(s)	667, 715, 867, 953
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	201, 522, 1144
Van91I	CCANNNNNTGG	2 cut(s)	230, 1069
VspI	ATTAAT	2 cut(s)	474, 990
XapI	RAATTY	4 cut(s)	226, 722, 819, 996
XbaI	TCTAGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	1214
XmiI	GTMKAC	2 cut(s)	398, 503
XspI	CTAG	2 cut(s)	111, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.