Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014914.1

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1608

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014914.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggctcagcagaaagaatccgatcccattttgttcgtgagtgatgaccaactgagcgatgatattgaggacaacaagatcgagagtggcagcagcagcagttctgctagtgacaatgctcatcgtcctcagatgtcgtcccctggtaatagtttttcttcccagatatggccgcagagttacagggagacactggattcttacgttattgcagcatcaccaaattttggtaatcttggatttgttccacctggtagtagctattcctattccagctttaagagtagttccgatgtgggttcaaaggctccgttattgtctgccgacgaacgtgaacgcttttctcagaattgggacaaaacctctagaacccaatcattatggtcacaaaggtcgacactaaataaacaagtcacgggagaattgcctgctgcctatggatgtagcttgactcaaaccgtattcaatggaattaatgtaatggcgggagttgggcttctgtctacaccttatacagtgaaagaagctggctgggcaagtattgtggtgctacttctttttgcaatcgtgtgttgttacacagccatactcatgagattctgctttgagaccaataaaggaattacgagttacccagatttaggagaagctgcatttggaagatatgggcgtattttcatatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

228

Amino Acids

24.84

Weight (kDa)

4.91

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	2 cut(s)	395, 503
AciI	CCGC	2 cut(s)	173, 485
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	168, 227, 641
AgsI	TTSAA	2 cut(s)	303, 466
AjnI	CCWGG	2 cut(s)	142, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	5 cut(s)	261, 276, 447, 527, 650
AluI	AGCT	5 cut(s)	261, 276, 447, 527, 650
Alw26I	GTCTC	2 cut(s)	182, 602
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	6 cut(s)	90, 93, 96, 212, 431, 650
ApoI	RAATTY	1 cut(s)	223
AseI	ATTAAT	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	102, 105, 108, 224, 418, 637
BciT130I	CCWGG	2 cut(s)	144, 252
BcoDI	GTCTC	2 cut(s)	182, 602
BfaI	CTAG	2 cut(s)	108, 366
BisI	GCNGC	7 cut(s)	91, 94, 97, 173, 213, 432, 651
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	7 cut(s)	92, 95, 98, 174, 214, 433, 652
Bme1390I	CCNGG	2 cut(s)	144, 252
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	144, 252
BmsI	GCATC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 227, 641
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	144, 252
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	168, 227, 641
BseMII	CTCAG	4 cut(s)	20, 44, 143, 359
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	6 cut(s)	102, 105, 108, 224, 418, 637
BseYI	CCCAGC	1 cut(s)	531
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	124, 368
BslI	CCNNNNNNNGG	3 cut(s)	168, 227, 641
BsmAI	GTCTC	2 cut(s)	182, 602
BsmFI	GGGAC	2 cut(s)	124, 368
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	2 cut(s)	22, 78
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	173, 485
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	4 cut(s)	19, 45, 142, 358
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	22, 78
Bst2UI	CCWGG	2 cut(s)	144, 252
Bst4CI	ACNGT	2 cut(s)	460, 517
BstC8I	GCNNGC	2 cut(s)	429, 529
BstDEI	CTNAG	4 cut(s)	6, 53, 129, 345
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	2 cut(s)	25, 81
BstMAI	GTCTC	2 cut(s)	182, 602
BstMBI	GATC	2 cut(s)	22, 78
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 533
BstNI	CCWGG	2 cut(s)	144, 252
BstSCI	CCNGG	2 cut(s)	142, 250
BstV1I	GCAGC	6 cut(s)	102, 105, 108, 224, 418, 637
BsuRI	GGCC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	191, 522
Cac8I	GCNNGC	2 cut(s)	429, 529
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	6, 53, 129, 345
DpnI	GATC	2 cut(s)	24, 80
DpnII	GATC	2 cut(s)	22, 78
EaeI	YGGCCR	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	142, 250
FaeI	CATG	1 cut(s)	595
FaiI	YATR	8 cut(s)	169, 382, 438, 513, 587, 593, 666, 680
FaqI	GGGAC	2 cut(s)	124, 368
FatI	CATG	1 cut(s)	591
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	395, 503
Fnu4HI	GCNGC	7 cut(s)	91, 94, 97, 173, 213, 432, 651
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	7 cut(s)	91, 94, 97, 173, 213, 432, 651
FspBI	CTAG	2 cut(s)	108, 366
GluI	GCNGC	7 cut(s)	91, 94, 97, 173, 213, 432, 651
GsaI	CCCAGC	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	4 cut(s)	17, 197, 451, 597
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	335, 396, 504
Hpy188I	TCNGA	4 cut(s)	22, 132, 292, 348
Hpy188III	TCNNGA	4 cut(s)	37, 82, 366, 592
Hpy8I	GTNNAC	3 cut(s)	335, 396, 504
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	460, 517
HpyCH4IV	ACGT	2 cut(s)	204, 331
HpyCH4V	TGCA	3 cut(s)	212, 563, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 533
HpyF3I	CTNAG	4 cut(s)	6, 53, 129, 345
HpySE526I	ACGT	2 cut(s)	204, 331
Hsp92II	CATG	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	22, 78
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	6 cut(s)	102, 105, 108, 224, 418, 637
LweI	GCATC	1 cut(s)	224
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	2 cut(s)	108, 366
MaeII	ACGT	2 cut(s)	204, 331
MaeIII	GTNAC	6 cut(s)	110, 179, 384, 412, 575, 629
MalI	GATC	2 cut(s)	24, 80
MboI	GATC	2 cut(s)	22, 78
MboII	GAAGA	2 cut(s)	150, 672
MluCI	AATT	5 cut(s)	223, 349, 422, 471, 621
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	61, 138, 373
MseI	TTAA	2 cut(s)	279, 474
MslI	CAYNNNNRTG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	144, 252
MvaI	CCWGG	2 cut(s)	144, 252
MwoI	GCNNNNNNNGC	2 cut(s)	96, 533
NdeII	GATC	2 cut(s)	22, 78
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	110, 384, 412
PagI	TCATGA	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	17, 197, 597
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	7 cut(s)	92, 95, 98, 174, 214, 433, 652
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	142, 250
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	142, 250
PspN4I	GGNNCC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	279, 474
SatI	GCNGC	7 cut(s)	91, 94, 97, 173, 213, 432, 651
Sau3AI	GATC	2 cut(s)	22, 78
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	144, 252
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	223, 349, 422, 471, 621
SsiI	CCGC	2 cut(s)	173, 485
SspMI	CTAG	2 cut(s)	108, 366
StyD4I	CCNGG	2 cut(s)	142, 250
TaaI	ACNGT	2 cut(s)	460, 517
TaiI	ACGT	2 cut(s)	207, 334
TaqI	TCGA	2 cut(s)	81, 395
TasI	AATT	5 cut(s)	223, 349, 422, 471, 621
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	3 cut(s)	17, 197, 597
Tru1I	TTAA	2 cut(s)	279, 474
Tru9I	TTAA	2 cut(s)	279, 474
TscAI	CASTG	2 cut(s)	198, 522
TseFI	GTSAC	3 cut(s)	110, 384, 412
TseI	GCWGC	6 cut(s)	90, 93, 96, 212, 431, 650
Tsp45I	GTSAC	3 cut(s)	110, 384, 412
TspDTI	ATGAA	1 cut(s)	667
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	198, 522
Van91I	CCANNNNNTGG	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	395, 503
XspI	CTAG	2 cut(s)	108, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.