MD14G1088200.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
11031232 .. 11036264
5033 bp
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UTR
Exon/CDS
Intron
MD14G1088200.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGCTGAGAAGGGTAAGGAGAAAGAATCGGATCCATTTCTGTACGAGAGTGAAGACGAAGAAGATGACATTGAGGAGAACAAGAGCGAGAGTGGGAGCAGCTCCACCAGCAGCCATGGCGTCCGTCATGAGGTTTCCTCTCCCGTTAGTTTTTCTTCTCACAAATGGCCTCAGAGTTACAGGGAGACAATCGATTCTTACTCAATTGCAGCATCACCAAATATTGCGAATCTTGGATTTGTTCCAAGTAATGCAAGCTTTACAAATTACTCGAAAAGCATTTTAGACCTGATTGGAAAGTCTCCATTCGTGTCTACCAACGAAAGTTTTCCTCAAAAGGGTGATTCGGAAAGGTTCTCAGTAAACCAATCATTATTATCAGAGAGATCGACACTGCATAAGCATCTGACCGGAGAAATACCTGTTGGTCATGGGTGTAGCTTCACTCAAACTGTCTTCAATGGAATTAATGTAATGGCAGGAGTTGGGCTTCTTTCAACACCTTCTACAATGAAAGAAGCTGGCTGGGCAGGTATCGTGGTGCTACTTCTTTTTGCAGTTGTGTGTTGTTACACGGCCATACTCATGAGATACTGCTTTGAGAGTAAAGAAGGCATCAAAACTTACCCGGATTTAGGAGAAGCTGCCTTTGGAAGATATGGGCGTCTTTTCATATCTATCATTTTGTACGCAGAACTATACTCTTATTGTGTAGAATTCATCATTTTGGAAGGAGATAATCTCAGCAGGCTATTCCCAGGAACATCTTTGAATTGGGCTGGTTTTCAGCTGGACTCCATGCACTTATTTGGAGTAGTAACTGCCCTCATTGTTCTGCCAAGTGTTTGGTTGAAAGATCTTCGTCTGATTTCATTCCTTTCAGCTGGTGGGGTCATTGTCACAGTTTTGATTGTTCTATGCGTGATTTTACTTGGTACAGCTGGTGGGGTTGGGTTCCATCACACCCCTCCAGCAGTGCACTGGAATGGAATTCCACTTGTAATTGGTGTGTATGGGTTTTGCTTTGCCGGGCATACTGTCTTTCCAAATATATACCAATCCATGGCAGACAGACGACAATTTAGCAAGGCGCTAATAATATGCTTTATCTTGTGCGTTCTGTTATATGGGAGTGTTGCAGTCATGGGATATCTCATGTTTGGTGAACGCACTCTGTCACAGATTACTTTGAATATGCCACCACATGCTTTTCTGTCCCAAGTTGCACTGTGGACAACAGTTATCAACCCCAAATATGCCCTGTTGATGAACCCGTTAGCAAGGAGTATTGAGGAGCTGCTGCCAGTTAGAATTTCTAACAGTTCCTGGTGTTTCATTCTTTTAAGAACAGCACTCGTCATTTCTACTGTTGTTTCCGCCTTTCTTATCCCGTTCTTTGGTCTTGTGATGGCTTTGATAGGCTCTCTACTCAGTATTCTTGTGTCAGTAATAGTTCCATCACTATGCTTTCTGAGAATAGCTGGAAGGAAAGCTACAAGGACACAGGTTGTTTCGAGTATCACGATTTCTGCTTTGGGCGTCATTGCTGCAGCCCTGGGTACATATTCTGCACTGTCAAAAATTGTGAATCACTATTGA

Protein Analysis

533

Amino Acids

57.99

Weight (kDa)

6.5

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 145 - 524 4.9e-61 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011484)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 314
AciI CCGC 1 cut(s) 1377
AclWI GGATC 2 cut(s) 26, 39
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 3 cut(s) 716, 990, 1311
AcyI GRCGYC 3 cut(s) 120, 664, 1539
AfaI GTAC 4 cut(s) 44, 689, 937, 1561
AfiI CCNNNNNNNGG 5 cut(s) 130, 338, 635, 1063, 1397
AgsI TTSAA 5 cut(s) 460, 498, 772, 853, 1192
AjnI CCWGG 3 cut(s) 757, 1325, 1554
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 633, 665
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 179, 306
Alw44I GTGCAC 1 cut(s) 977
AlwI GGATC 2 cut(s) 26, 39
AlwNI CAGNNNCTG 1 cut(s) 1326
AoxI GGCC 2 cut(s) 167, 576
ApaLI GTGCAC 1 cut(s) 977
ApeKI GCWGC 8 cut(s) 99, 111, 209, 644, 1297, 1300, 1547, 1550
ApoI RAATTY 3 cut(s) 716, 990, 1311
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 1093
AsuC2I CCSGG 2 cut(s) 629, 1030
AsuHPI GGTGA 3 cut(s) 207, 353, 1175
BaeGI GKGCMC 1 cut(s) 981
BamHI GGATCC 1 cut(s) 31
BarI GAAGNNNNNNTAC 2 cut(s) 1477, 1509
BbsI GAAGAC 2 cut(s) 60, 448
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 8 cut(s) 111, 123, 221, 631, 1284, 1287, 1534, 1562
BccI CCATC 3 cut(s) 966, 1402, 1465
BceAI ACGGC 1 cut(s) 591
BciT130I CCWGG 3 cut(s) 759, 1327, 1556
BcnI CCSGG 2 cut(s) 629, 1030
BcoDI GTCTC 2 cut(s) 179, 306
BfmI CTRYAG 1 cut(s) 1548
BfoI RGCGCY 1 cut(s) 1094
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 856
BisI GCNGC 8 cut(s) 100, 112, 210, 645, 1298, 1301, 1548, 1551
BlsI GCNGC 8 cut(s) 101, 113, 211, 646, 1299, 1302, 1549, 1552
Bme1390I CCNGG 5 cut(s) 629, 759, 1030, 1327, 1556
BmiI GGNNCC 2 cut(s) 33, 956
BmrFI CCNGG 5 cut(s) 629, 759, 1030, 1327, 1556
BmsI GCATC 3 cut(s) 221, 412, 624
BpiI GAAGAC 2 cut(s) 60, 448
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 726, 758
BpmI CTGGAG 1 cut(s) 954
BpuMI CCSGG 2 cut(s) 629, 1030
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 3 cut(s) 120, 664, 1539
BsaJI CCNNGG 5 cut(s) 115, 757, 1062, 1554, 1555
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 338, 635, 1063, 1397
Bse1I ACTGG 2 cut(s) 986, 1304
Bse3DI GCAATG 1 cut(s) 1542
BseBI CCWGG 3 cut(s) 759, 1327, 1556
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 5 cut(s) 115, 757, 1062, 1554, 1555
BseLI CCNNNNNNNGG 5 cut(s) 130, 338, 635, 1063, 1397
BseMI GCAATG 1 cut(s) 1542
BseMII CTCAG 5 cut(s) 185, 372, 757, 1444, 1463
BseNI ACTGG 2 cut(s) 986, 1304
BseRI GAGGAG 2 cut(s) 89, 1307
BseSI GKGCMC 1 cut(s) 981
BseXI GCAGC 8 cut(s) 111, 123, 221, 631, 1284, 1287, 1534, 1562
BseYI CCCAGC 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 1554
BshFI GGCC 2 cut(s) 169, 578
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 3 cut(s) 411, 629, 1029
BslFI GGGAC 1 cut(s) 1201
BslI CCNNNNNNNGG 5 cut(s) 130, 338, 635, 1063, 1397
BsmAI GTCTC 2 cut(s) 179, 306
BsmFI GGGAC 1 cut(s) 1201
BsnI GGCC 2 cut(s) 169, 578
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 3 cut(s) 31, 386, 856
Bsp19I CCATGG 2 cut(s) 115, 1062
BspACI CCGC 1 cut(s) 1377
BspANI GGCC 2 cut(s) 169, 578
BspCNI CTCAG 5 cut(s) 184, 371, 756, 1443, 1464
BspDI ATCGAT 1 cut(s) 192
BspHI TCATGA 2 cut(s) 127, 585
BspLI GGNNCC 2 cut(s) 33, 956
BspMAI CTGCAG 1 cut(s) 1552
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 26, 39
BsrDI GCAATG 1 cut(s) 1542
BsrI ACTGG 2 cut(s) 986, 1304
BssECI CCNNGG 5 cut(s) 115, 757, 1062, 1554, 1555
BssMI GATC 3 cut(s) 31, 386, 856
BssNI GRCGYC 3 cut(s) 120, 664, 1539
BssT1I CCWWGG 2 cut(s) 115, 1062
Bst2UI CCWGG 3 cut(s) 759, 1327, 1556
Bst4CI ACNGT 8 cut(s) 454, 904, 1039, 1230, 1240, 1322, 1369, 1575
BstACI GRCGYC 3 cut(s) 120, 664, 1539
BstC8I GCNNGC 3 cut(s) 256, 523, 749
BstDEI CTNAG 6 cut(s) 6, 171, 358, 743, 1430, 1472
BstDSI CCRYGG 2 cut(s) 115, 1062
BstH2I RGCGCY 1 cut(s) 1094
BstHHI GCGC 1 cut(s) 1093
BstKTI GATC 3 cut(s) 34, 389, 859
BstMAI GTCTC 2 cut(s) 179, 306
BstMBI GATC 3 cut(s) 31, 386, 856
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 527
BstNI CCWGG 3 cut(s) 759, 1327, 1556
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 5 cut(s) 627, 757, 1028, 1325, 1554
BstSFI CTRYAG 1 cut(s) 1548
BstSLI GKGCMC 1 cut(s) 981
BstV1I GCAGC 8 cut(s) 111, 123, 221, 631, 1284, 1287, 1534, 1562
BstV2I GAAGAC 2 cut(s) 60, 448
BstX2I RGATCY 2 cut(s) 31, 856
BstXI CCANNNNNNTGG 1 cut(s) 846
BstYI RGATCY 2 cut(s) 31, 856
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 169, 578
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 2 cut(s) 115, 1062
BtsI GCAGTG 2 cut(s) 392, 981
BtsIMutI CAGTG 5 cut(s) 392, 979, 981, 1226, 1571
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 3 cut(s) 256, 523, 749
CaiI CAGNNNCTG 1 cut(s) 1326
CciI TCATGA 2 cut(s) 127, 585
CfoI GCGC 1 cut(s) 1093
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 3 cut(s) 109, 653, 1528
Csp6I GTAC 4 cut(s) 43, 688, 936, 1560
CviAII CATG 9 cut(s) 116, 128, 431, 586, 799, 1063, 1144, 1156, 1205
CviQI GTAC 4 cut(s) 43, 688, 936, 1560
DdeI CTNAG 6 cut(s) 6, 171, 358, 743, 1430, 1472
DpnI GATC 3 cut(s) 33, 388, 858
DpnII GATC 3 cut(s) 31, 386, 856
EaeI YGGCCR 1 cut(s) 576
EciI GGCGGA 1 cut(s) 1366
Eco130I CCWWGG 2 cut(s) 115, 1062
Eco32I GATATC 1 cut(s) 1151
EcoRI GAATTC 2 cut(s) 716, 990
EcoRII CCWGG 3 cut(s) 757, 1325, 1554
EcoRV GATATC 1 cut(s) 1151
EcoT14I CCWWGG 2 cut(s) 115, 1062
ErhI CCWWGG 2 cut(s) 115, 1062
FaeI CATG 9 cut(s) 119, 131, 434, 589, 802, 1066, 1147, 1159, 1208
FaqI GGGAC 1 cut(s) 1201
FatI CATG 9 cut(s) 115, 127, 430, 585, 798, 1062, 1143, 1155, 1204
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 8 cut(s) 100, 112, 210, 645, 1298, 1301, 1548, 1551
Fsp4HI GCNGC 8 cut(s) 100, 112, 210, 645, 1298, 1301, 1548, 1551
GlaI GCGC 1 cut(s) 1092
GluI GCNGC 8 cut(s) 100, 112, 210, 645, 1298, 1301, 1548, 1551
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 954
HaeII RGCGCY 1 cut(s) 1094
HaeIII GGCC 2 cut(s) 169, 578
HapII CCGG 3 cut(s) 411, 629, 1029
HgaI GACGC 3 cut(s) 109, 653, 1528
HhaI GCGC 1 cut(s) 1093
Hin1I GRCGYC 3 cut(s) 120, 664, 1539
Hin1II CATG 9 cut(s) 119, 131, 434, 589, 802, 1066, 1147, 1159, 1208
Hin6I GCGC 1 cut(s) 1091
HinP1I GCGC 1 cut(s) 1091
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 6 cut(s) 26, 194, 229, 344, 794, 1588
HpaII CCGG 3 cut(s) 411, 629, 1029
HphI GGTGA 3 cut(s) 207, 353, 1175
Hpy166II GTNNAC 5 cut(s) 315, 364, 979, 1166, 1233
Hpy188I TCNGA 7 cut(s) 31, 174, 349, 382, 408, 867, 1473
Hpy188III TCNNGA 3 cut(s) 128, 586, 1522
Hpy8I GTNNAC 5 cut(s) 315, 364, 979, 1166, 1233
HpyAV CCTTC 5 cut(s) 4, 513, 605, 725, 1479
HpyCH4III ACNGT 8 cut(s) 454, 904, 1039, 1230, 1240, 1322, 1369, 1575
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 527
HpyF3I CTNAG 6 cut(s) 6, 171, 358, 743, 1430, 1472
Hsp92I GRCGYC 3 cut(s) 120, 664, 1539
Hsp92II CATG 9 cut(s) 119, 131, 434, 589, 802, 1066, 1147, 1159, 1208
HspAI GCGC 1 cut(s) 1091
Kzo9I GATC 3 cut(s) 31, 386, 856
LmnI GCTCC 3 cut(s) 96, 107, 1294
Lsp1109I GCAGC 8 cut(s) 111, 123, 221, 631, 1284, 1287, 1534, 1562
LweI GCATC 3 cut(s) 221, 412, 624
MaeIII GTNAC 5 cut(s) 176, 569, 817, 898, 1176
MalI GATC 3 cut(s) 33, 388, 858
MboI GATC 3 cut(s) 31, 386, 856
MboII GAAGA 7 cut(s) 65, 71, 74, 147, 448, 666, 851
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 2 cut(s) 31, 856
MhlI GDGCHC 1 cut(s) 981
MlyI GAGTC 1 cut(s) 788
MnlI CCTC 8 cut(s) 67, 124, 148, 180, 342, 836, 978, 1285
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 468, 1343
MslI CAYNNNNRTG 3 cut(s) 584, 984, 1462
MspA1I CMGCKG 3 cut(s) 790, 884, 941
MspI CCGG 3 cut(s) 411, 629, 1029
MspR9I CCNGG 5 cut(s) 629, 759, 1030, 1327, 1556
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 3 cut(s) 759, 1327, 1556
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 527
NciI CCSGG 2 cut(s) 629, 1030
NcoI CCATGG 2 cut(s) 115, 1062
NdeII GATC 3 cut(s) 31, 386, 856
NlaIII CATG 9 cut(s) 119, 131, 434, 589, 802, 1066, 1147, 1159, 1208
NlaIV GGNNCC 2 cut(s) 33, 956
NmuCI GTSAC 2 cut(s) 898, 1176
NspI RCATGY 1 cut(s) 1208
PagI TCATGA 2 cut(s) 127, 585
PasI CCCWGGG 1 cut(s) 1555
PcsI WCGNNNNNNNCGW 1 cut(s) 1520
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 5 cut(s) 26, 194, 229, 344, 1588
PflMI CCANNNNNTGG 1 cut(s) 1063
PkrI GCNGC 8 cut(s) 101, 113, 211, 646, 1299, 1302, 1549, 1552
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 3 cut(s) 757, 1325, 1554
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 3 cut(s) 757, 1325, 1554
PspN4I GGNNCC 2 cut(s) 33, 956
PstI CTGCAG 1 cut(s) 1552
PstNI CAGNNNCTG 1 cut(s) 1326
PsuI RGATCY 2 cut(s) 31, 856
PvuII CAGCTG 3 cut(s) 790, 884, 941
RsaI GTAC 4 cut(s) 44, 689, 937, 1561
RsaNI GTAC 4 cut(s) 43, 688, 936, 1560
RseI CAYNNNNRTG 3 cut(s) 584, 984, 1462
SaqAI TTAA 2 cut(s) 468, 1343
SatI GCNGC 8 cut(s) 100, 112, 210, 645, 1298, 1301, 1548, 1551
Sau3AI GATC 3 cut(s) 31, 386, 856
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 5 cut(s) 629, 759, 1030, 1327, 1556
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 3 cut(s) 221, 412, 624
SfcI CTRYAG 1 cut(s) 1548
SmiMI CAYNNNNRTG 3 cut(s) 584, 984, 1462
SsiI CCGC 1 cut(s) 1377
SspI AATATT 1 cut(s) 223
StyD4I CCNGG 5 cut(s) 627, 757, 1028, 1325, 1554
StyI CCWWGG 2 cut(s) 115, 1062
TaaI ACNGT 8 cut(s) 454, 904, 1039, 1230, 1240, 1322, 1369, 1575
TaqI TCGA 4 cut(s) 192, 272, 389, 1514
TfiI GAWTC 5 cut(s) 26, 194, 229, 344, 1588
Tru1I TTAA 2 cut(s) 468, 1343
Tru9I TTAA 2 cut(s) 468, 1343
TscAI CASTG 5 cut(s) 399, 981, 986, 1233, 1578
TseFI GTSAC 2 cut(s) 898, 1176
TseI GCWGC 8 cut(s) 99, 111, 209, 644, 1297, 1300, 1547, 1550
Tsp45I GTSAC 2 cut(s) 898, 1176
TspDTI ATGAA 6 cut(s) 527, 661, 709, 861, 1283, 1324
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 5 cut(s) 399, 981, 986, 1233, 1578
Van91I CCANNNNNTGG 1 cut(s) 1063
VneI GTGCAC 1 cut(s) 977
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 3 cut(s) 716, 990, 1311
XceI RCATGY 1 cut(s) 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.