Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Forward (+)

39482982 .. 39486531

Gene Structure 3550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG324500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACCCATTAGCAAGGAGTATAGAGGAGCTTCTGCCTGTTGGACTTTCTAATAGTTTTTGGTGTTTCATTCTTTTAAGAATAGCACTTGTCATCTCTACTGTTGGTGCTGCTTTTCTTATTCCTTTCTTTGGTCTTGTGATGTCTTTAATAGGCTCTCTACTCAGCGTACTCGTGTCGGTGATAGTGCCAGCACTATGCTTCCTGAAAATAGCAGGAATGAAAGCTTCGAGGATACAGGTTGTTTCAAGTATCACTGTAGCTGGATTGGGAGTTGTTGCTGGAATCCTTGGTACATATTCTTCAGTATCCAAAATCGTGAAGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

110

Amino Acids

11.53

Weight (kDa)

9.78

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	19 - 102	2.6e-09	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	171, 295
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	249
AluBI	AGCT	3 cut(s)	31, 227, 263
AluI	AGCT	3 cut(s)	31, 227, 263
ApeKI	GCWGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BauI	CACGAG	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	97
BciVI	GTATCC	2 cut(s)	228, 319
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	2 cut(s)	228, 319
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	103, 259
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	97
BsuI	GTATCC	2 cut(s)	228, 319
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	170, 294
CviJI	RGCY	4 cut(s)	31, 156, 227, 263
CviKI_1	RGCY	4 cut(s)	31, 156, 227, 263
CviQI	GTAC	2 cut(s)	170, 294
DdeI	CTNAG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaiI	YATR	3 cut(s)	23, 199, 298
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	205, 319
HpyCH4III	ACNGT	2 cut(s)	103, 259
HpyF3I	CTNAG	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	51, 201, 204, 218, 224, 249, 267
Lsp1109I	GCAGC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	2 cut(s)	19, 225
MseI	TTAA	2 cut(s)	77, 149
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	171, 295
RsaNI	GTAC	2 cut(s)	170, 294
SaqAI	TTAA	2 cut(s)	77, 149
SatI	GCNGC	1 cut(s)	111
SetI	ASST	4 cut(s)	33, 229, 243, 265
SfcI	CTRYAG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	103, 259
TaqI	TCGA	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	77, 149
Tru9I	TTAA	2 cut(s)	77, 149
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	17, 58, 236
TspRI	CASTG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.