RLG00000018871

Amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
38751185 .. 38756743
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018871

Sequence Viewer

Length: 1770 bp
ATGGCTCAGCAGAAAGAATCCGATCCCATTTTGTTCGTGAGTGATGACCAACTGAGCGATGATATTGAGGACAACAAGATCGAGAGTGGCAGCAGCAGCAGTTCTGGTAGTGACAATGCTCAGATGTCCTCCCCCGGTAATAGTTTTTCTTCTCAGAAATGGCCGCAGAGTTACAGGGAGACACTGGATTCTTACGTTATTGCAGCATCACCAAATTTTGGTAATCTTGGATTTGTTCCACCTGGTAGTAGCTATTCCTATTCCAGCTTTAAGAGTAGTTCCGATGTGGGTTCAAAGGCTCCGTTATTGTCTGCCGACGAACGTGAACGCTTTTCTCAGAATTGGGACAAAACCTCAAGAGCCCAATCACTATGGTCACAAAGGTCGACACTAAATAAGCAGGTCACTGGAGAATTGCCTGCTGCCTATGGATGTAGCCTGACTCAAACCGTATTCAATGGAATTAATGTAATGGCCGGAGTTGGGCTTCTGTCTACACCTTATACAGTGAAAGAAGCTGGCTGGGCAAGTATTGTGGTGCTACTTCTTTTTGCAATCGTGTGTTGTTACACAGCCATACTCATGAGATTCTGCTTTGAGACCAATAAAGGAATTACAAGTTACCCAGATTTAGGAGAAGCTGCATTCGGAAGATATGGGCGTATTTTCATATCTATCATTTTGTACGCAGAACTATATTCTTACTGTGTAGAATTCATCATTTTGGAAGGAGATAATCTCAGCAGGCTATTCCCAGGGACATCCTTGAATTGGGCTGGTTTTCACTTGGACTCCTTGCACTTATTTGGAATTTTAACTGCCTTGATTGTTCTACCAACTGTTTGGTTGAAGGATCTTCGTTTGATTTCATTCCTTTCAGCTGGTGGGGTCATTGTTACAATTTTGATCGTTCTATGTGTAATTTTACTTGGTACAACTGGTGGGATTGGATTTCATCAAACTGCTCAAGTAGTGAACATTAATGGAATTCCACTTGTAATTGGTGTATATGGGTTTTGCTTTGCTGGGCATACTGTGTTTCCAAATATTTACCAATCCATGGCAGACAAAAAACAATTTACTAAAGCCGTGATTATATGCTTTCTATTGGCCGCTCTGTTATATGGCAGTGTTGCAGTCATGGGATTTCTCATGTTTGGTCAAAGCACATTGTCTCAGATAACTTTAAATATGCCACCGCATGCACTTGCTTCCAAAGTTGCATTGTGGACAACTTGGATACAATCAGATAATTTGGTAGCCTTATTTTCTTCCTTGACACTGAACAAATATGCCCTCCTGATGAACCCATTAGCAAGGAGTATAGAGGAGCTTCTGCCTGTTGGACTTTCTAATAGTTTCTGGTGTTTCATTCTTTTAAGAACAGCACTTGTCATCTCTACTGTTGGTGCCGCTTTTCTTATTCCTTTCTTTGGTCTTGTGATGTCTTTAATAGGCTCTCTACTCAGTGTACTCGTGTCGGTGATAGTGCCAGCACTATGCTTCCTGAAAATAGCAGGAATGAACGCTTCGAGGATACAGGTTGTTTCAAGTATCACTGTAGCTGCATTGGGAGTTGTTGCTGGAATCCTTGGTTTCCTTGGAGTTTGCTGCTTGAAGTTTGGCAGGAGGGGTCTAAACAGTGGCAAGTTTGGTGTGACACCTCTGCAGCACGGTGGTAGGGTGTTTGATTCTGGAAAGGTCACGGGCGAATTGGGCGACATTGGATTTCGATCAGCTTCGTTTCCAAGCGGCAACGCCAGCGTCTGA

Protein Analysis

590

Amino Acids

63.22

Weight (kDa)

7.48

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 146 - 535 5e-54 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 157 - 425 2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011484)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 1409
AccB7I CCANNNNNTGG 2 cut(s) 218, 1060
AccBSI CCGCTC 1 cut(s) 1115
AccI GTMKAC 2 cut(s) 386, 494
AciI CCGC 5 cut(s) 164, 1113, 1199, 1413, 1752
AclWI GGATC 2 cut(s) 17, 861
AcoI YGGCCR 3 cut(s) 161, 474, 1110
AcsI RAATTY 4 cut(s) 214, 713, 810, 987
AfaI GTAC 3 cut(s) 686, 934, 1473
AfiI CCNNNNNNNGG 6 cut(s) 218, 483, 632, 771, 1060, 1433
AgsI TTSAA 6 cut(s) 294, 457, 769, 850, 1551, 1618
AjnI CCWGG 2 cut(s) 241, 754
AluBI AGCT 8 cut(s) 252, 267, 518, 641, 881, 1333, 1565, 1739
AluI AGCT 8 cut(s) 252, 267, 518, 641, 881, 1333, 1565, 1739
Alw26I GTCTC 3 cut(s) 173, 593, 1179
AlwI GGATC 2 cut(s) 17, 861
AlwNI CAGNNNCTG 1 cut(s) 1767
AoxI GGCC 3 cut(s) 161, 474, 1110
ApeKI GCWGC 9 cut(s) 90, 93, 96, 203, 422, 641, 1565, 1611, 1669
ApoI RAATTY 4 cut(s) 214, 713, 810, 987
AseI ATTAAT 2 cut(s) 465, 981
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 201, 1495
BanI GGYRCC 1 cut(s) 1409
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 1475
BbvI GCAGC 9 cut(s) 102, 105, 108, 215, 409, 628, 1552, 1598, 1681
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 2 cut(s) 243, 756
BciVI GTATCC 2 cut(s) 1233, 1530
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 173, 593, 1179
BfmI CTRYAG 2 cut(s) 1560, 1667
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 2 cut(s) 1233, 1530
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 135, 243, 756
BmiI GGNNCC 2 cut(s) 300, 1411
BmrFI CCNGG 3 cut(s) 135, 243, 756
BmsI GCATC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 723, 755
BpmI CTGGAG 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 340, 951
BpuMI CCSGG 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 1732
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 6 cut(s) 133, 754, 755, 1059, 1591, 1600
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 483, 632, 771, 1060, 1433
Bse1I ACTGG 3 cut(s) 189, 412, 943
Bse8I GATNNNNATC 1 cut(s) 1732
BseBI CCWGG 2 cut(s) 243, 756
BseDI CCNNGG 6 cut(s) 133, 754, 755, 1059, 1591, 1600
BseGI GGATG 2 cut(s) 437, 761
BseJI GATNNNNATC 1 cut(s) 1732
BseLI CCNNNNNNNGG 6 cut(s) 218, 483, 632, 771, 1060, 1433
BseMII CTCAG 8 cut(s) 20, 44, 134, 167, 350, 754, 1190, 1480
BseNI ACTGG 3 cut(s) 189, 412, 943
BseRI GAGGAG 1 cut(s) 1343
BseXI GCAGC 9 cut(s) 102, 105, 108, 215, 409, 628, 1552, 1598, 1681
BseYI CCCAGC 2 cut(s) 522, 1025
BshFI GGCC 3 cut(s) 163, 476, 1112
BshNI GGYRCC 1 cut(s) 1409
BsiSI CCGG 2 cut(s) 135, 477
BslFI GGGAC 2 cut(s) 359, 772
BslI CCNNNNNNNGG 6 cut(s) 218, 483, 632, 771, 1060, 1433
BsmAI GTCTC 3 cut(s) 173, 593, 1179
BsmFI GGGAC 2 cut(s) 359, 772
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 3 cut(s) 163, 476, 1112
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 5 cut(s) 22, 78, 853, 906, 1733
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1059
BspACI CCGC 5 cut(s) 164, 1113, 1199, 1413, 1752
BspANI GGCC 3 cut(s) 163, 476, 1112
BspCNI CTCAG 8 cut(s) 19, 45, 133, 166, 349, 753, 1189, 1479
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 300, 1411
BspMAI CTGCAG 1 cut(s) 1671
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 17, 861
BspT107I GGYRCC 1 cut(s) 1409
BspTNI GGTCTC 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 1115
BsrI ACTGG 3 cut(s) 189, 412, 943
BssECI CCNNGG 6 cut(s) 133, 754, 755, 1059, 1591, 1600
BssMI GATC 5 cut(s) 22, 78, 853, 906, 1733
BssSI CACGAG 1 cut(s) 1475
BssT1I CCWWGG 3 cut(s) 1059, 1591, 1600
Bst2BI CACGAG 1 cut(s) 1475
Bst2UI CCWGG 2 cut(s) 243, 756
Bst4CI ACNGT 9 cut(s) 451, 508, 707, 841, 1036, 1405, 1561, 1643, 1676
BstC8I GCNNGC 6 cut(s) 420, 520, 746, 1203, 1494, 1762
BstDEI CTNAG 8 cut(s) 6, 53, 120, 153, 336, 740, 1176, 1466
BstDSI CCRYGG 1 cut(s) 1059
BstF5I GGATG 2 cut(s) 437, 761
BstKTI GATC 5 cut(s) 25, 81, 856, 909, 1736
BstMAI GTCTC 3 cut(s) 173, 593, 1179
BstMBI GATC 5 cut(s) 22, 78, 853, 906, 1733
BstMWI GCNNNNNNNGC 4 cut(s) 96, 524, 1716, 1761
BstNI CCWGG 2 cut(s) 243, 756
BstNSI RCATGY 1 cut(s) 1205
BstSCI CCNGG 3 cut(s) 133, 241, 754
BstSFI CTRYAG 2 cut(s) 1560, 1667
BstV1I GCAGC 9 cut(s) 102, 105, 108, 215, 409, 628, 1552, 1598, 1681
BstX2I RGATCY 1 cut(s) 853
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 1 cut(s) 853
BsuI GTATCC 2 cut(s) 1233, 1530
BsuRI GGCC 3 cut(s) 163, 476, 1112
BtgI CCRYGG 1 cut(s) 1059
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 437, 761
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 8 cut(s) 182, 405, 513, 1135, 1280, 1474, 1557, 1648
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 6 cut(s) 420, 520, 746, 1203, 1494, 1762
CaiI CAGNNNCTG 1 cut(s) 1767
CciI TCATGA 1 cut(s) 582
CseI GACGC 1 cut(s) 1753
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 3 cut(s) 685, 933, 1472
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 5 cut(s) 583, 1060, 1141, 1153, 1202
CviQI GTAC 3 cut(s) 685, 933, 1472
DdeI CTNAG 8 cut(s) 6, 53, 120, 153, 336, 740, 1176, 1466
DpnI GATC 5 cut(s) 24, 80, 855, 908, 1735
DpnII GATC 5 cut(s) 22, 78, 853, 906, 1733
DraI TTTAAA 1 cut(s) 1188
EaeI YGGCCR 3 cut(s) 161, 474, 1110
Eco130I CCWWGG 3 cut(s) 1059, 1591, 1600
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 593
EcoRI GAATTC 2 cut(s) 713, 987
EcoRII CCWGG 2 cut(s) 241, 754
EcoT14I CCWWGG 3 cut(s) 1059, 1591, 1600
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 3 cut(s) 1059, 1591, 1600
FaeI CATG 5 cut(s) 586, 1063, 1144, 1156, 1205
FaqI GGGAC 2 cut(s) 359, 772
FatI CATG 5 cut(s) 582, 1059, 1140, 1152, 1201
FblI GTMKAC 2 cut(s) 386, 494
FokI GGATG 2 cut(s) 444, 748
FriOI GRGCYC 1 cut(s) 364
GsaI CCCAGC 2 cut(s) 526, 1029
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 3 cut(s) 163, 476, 1112
HapII CCGG 2 cut(s) 135, 477
HgaI GACGC 1 cut(s) 1753
Hin1II CATG 5 cut(s) 586, 1063, 1144, 1156, 1205
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 7 cut(s) 17, 188, 442, 588, 791, 1587, 1691
HpaII CCGG 2 cut(s) 135, 477
HphI GGTGA 2 cut(s) 201, 1495
Hpy166II GTNNAC 6 cut(s) 326, 387, 495, 976, 1230, 1472
Hpy188I TCNGA 9 cut(s) 22, 123, 156, 283, 339, 650, 1179, 1249, 1769
Hpy188III TCNNGA 7 cut(s) 37, 82, 357, 583, 1300, 1507, 1695
Hpy8I GTNNAC 6 cut(s) 326, 387, 495, 976, 1230, 1472
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 722, 844
HpyCH4III ACNGT 9 cut(s) 451, 508, 707, 841, 1036, 1405, 1561, 1643, 1676
HpyCH4IV ACGT 2 cut(s) 195, 322
HpyCH4V TGCA 9 cut(s) 203, 554, 644, 799, 1136, 1205, 1223, 1568, 1669
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 524, 1716, 1761
HpyF3I CTNAG 8 cut(s) 6, 53, 120, 153, 336, 740, 1176, 1466
HpySE526I ACGT 2 cut(s) 195, 322
Hsp92II CATG 5 cut(s) 586, 1063, 1144, 1156, 1205
Kzo9I GATC 5 cut(s) 22, 78, 853, 906, 1733
LmnI GCTCC 2 cut(s) 304, 1330
Lsp1109I GCAGC 9 cut(s) 102, 105, 108, 215, 409, 628, 1552, 1598, 1681
LweI GCATC 1 cut(s) 215
MabI ACCWGGT 1 cut(s) 241
MaeII ACGT 2 cut(s) 195, 322
MaeIII GTNAC 9 cut(s) 110, 170, 375, 403, 566, 620, 895, 1657, 1702
MalI GATC 5 cut(s) 24, 80, 855, 908, 1735
MbiI CCGCTC 1 cut(s) 1115
MboI GATC 5 cut(s) 22, 78, 853, 906, 1733
MboII GAAGA 4 cut(s) 141, 663, 848, 1263
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 1 cut(s) 364
MlyI GAGTC 2 cut(s) 436, 785
MmeI TCCRAC 1 cut(s) 1324
MnlI CCTC 8 cut(s) 61, 139, 364, 1307, 1321, 1527, 1623, 1674
MseI TTAA 7 cut(s) 270, 465, 815, 981, 1187, 1379, 1451
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 2 cut(s) 135, 477
MspR9I CCNGG 3 cut(s) 135, 243, 756
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 243, 756
MwoI GCNNNNNNNGC 4 cut(s) 96, 524, 1716, 1761
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 1 cut(s) 1059
NdeII GATC 5 cut(s) 22, 78, 853, 906, 1733
NlaIII CATG 5 cut(s) 586, 1063, 1144, 1156, 1205
NlaIV GGNNCC 2 cut(s) 300, 1411
NmuCI GTSAC 5 cut(s) 110, 375, 403, 1657, 1702
NspI RCATGY 1 cut(s) 1205
PaeI GCATGC 1 cut(s) 1205
PagI TCATGA 1 cut(s) 582
PasI CCCWGGG 1 cut(s) 755
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 5 cut(s) 17, 188, 588, 1587, 1691
PflMI CCANNNNNTGG 2 cut(s) 218, 1060
PleI GAGTC 2 cut(s) 436, 785
PpsI GAGTC 2 cut(s) 436, 785
PshBI ATTAAT 2 cut(s) 465, 981
Psp6I CCWGG 2 cut(s) 241, 754
PspFI CCCAGC 2 cut(s) 522, 1025
PspGI CCWGG 2 cut(s) 241, 754
PspN4I GGNNCC 2 cut(s) 300, 1411
PstI CTGCAG 1 cut(s) 1671
PstNI CAGNNNCTG 1 cut(s) 1767
PsuI RGATCY 1 cut(s) 853
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 3 cut(s) 686, 934, 1473
RsaNI GTAC 3 cut(s) 685, 933, 1472
RseI CAYNNNNRTG 1 cut(s) 581
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 7 cut(s) 270, 465, 815, 981, 1187, 1379, 1451
Sau3AI GATC 5 cut(s) 22, 78, 853, 906, 1733
SchI GAGTC 2 cut(s) 436, 785
ScrFI CCNGG 3 cut(s) 135, 243, 756
SduI GDGCHC 1 cut(s) 364
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 2 cut(s) 1560, 1667
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 355, 966
SmoI CTYRAG 2 cut(s) 355, 966
SphI GCATGC 1 cut(s) 1205
SsiI CCGC 5 cut(s) 164, 1113, 1199, 1413, 1752
SspI AATATT 1 cut(s) 1048
StyD4I CCNGG 3 cut(s) 133, 241, 754
StyI CCWWGG 3 cut(s) 1059, 1591, 1600
TaaI ACNGT 9 cut(s) 451, 508, 707, 841, 1036, 1405, 1561, 1643, 1676
TaiI ACGT 2 cut(s) 198, 325
TaqI TCGA 4 cut(s) 81, 386, 1532, 1732
TatI WGTACW 1 cut(s) 1471
TauI GCSGC 4 cut(s) 166, 1115, 1415, 1755
TfiI GAWTC 5 cut(s) 17, 188, 588, 1587, 1691
Tru1I TTAA 7 cut(s) 270, 465, 815, 981, 1187, 1379, 1451
Tru9I TTAA 7 cut(s) 270, 465, 815, 981, 1187, 1379, 1451
TscAI CASTG 8 cut(s) 189, 412, 513, 1135, 1287, 1474, 1564, 1648
TseFI GTSAC 5 cut(s) 110, 375, 403, 1657, 1702
TseI GCWGC 9 cut(s) 90, 93, 96, 203, 422, 641, 1565, 1611, 1669
Tsp45I GTSAC 5 cut(s) 110, 375, 403, 1657, 1702
TspDTI ATGAA 7 cut(s) 658, 706, 858, 944, 1319, 1360, 1538
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 8 cut(s) 189, 412, 513, 1135, 1287, 1474, 1564, 1648
Van91I CCANNNNNTGG 2 cut(s) 218, 1060
VspI ATTAAT 2 cut(s) 465, 981
XapI RAATTY 4 cut(s) 214, 713, 810, 987
XceI RCATGY 1 cut(s) 1205
XmiI GTMKAC 2 cut(s) 386, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.