Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011484

Physical Location & Seq

Genomic Coordinates Forward (+)

8115203 .. 8117663

Gene Structure 2461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07820.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGTACAATTTCATTCATCCGCTCGGCTCTCTGTGTGCGGTGTCTGTTTTGGGTGACGAGTGACATTGCAGTCCCAACAATGGCTGAGAAGGGTAAGGAGAAAGAATCGGATCCATTTCTGTACGAGAGTGAAGACGAAGAAGATGACATTGAGGAGAACAAGAGCGAGAGTGGGAGCAGCTCCACCAGCAGCCATGGCGTCCGTCATGAGGTTTCCTCTCCTGTTAGTTTTTCTTCTCACAAATGGCCTCAGAGTTACAGGGAGACAATCGATTCTTACTCAATTGCAGCATCACCCAATATTGCAAATCTCGGATTTGTTCCAAGTAATGCAAGCTTTACAAATTACTCGAAAAGCATTTTAGACCTGATTGGAAAGTCTCCATTCGTGTCTACCAACGAAGGTTTTCCTCAAAAGGGTGATTCGGAAAGGTTCTCAGTAAACCAATCATTATTATCAGAGAGATCGACACTGCATAAGCATCTGACCGGAGAAATACCTGTTGGTCATGGGTGTAGCTTCACTCAAACTGTCTTCAATGGAATTAATGTAATGGCAGGAGTTGGGCTTCTTTCAACACCTTCTACAATGAAAGAAGCTGGCTGGGCAGGTATCGTGGTGCTACTTCTTTTTGCAGTTGTGTGTTGTTACACGGCCATACTCATGAGATACTGCTTTGAGAGTAAAGAAGGCATCAAAACTTACCCGGATTTAGGAGAAGCTGCCTTTGGAAGATATGGGCGTCTTTTCATATCTCGATCATTTTGTACGCAGAACTATACTCTTATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

266

Amino Acids

29.08

Weight (kDa)

5.42

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41190 AT2G41190
fragaria_vesca	FvH4_6g25440
malus_domestica	MD14G1088200.v1.1
prunus_persica	Prupe.7G038500_v2.0.a1
pyrus_communis	pycom14g07820 pycom14g07830
rosa_chinensis	RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata	RLG00000018871
rosa_multiflora	Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117920
rosa_rugosa	Rorug02G0258100
rosa_samantha	Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana	Rw2G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	2 cut(s)	22, 40
AclWI	GGATC	2 cut(s)	107, 120
AcoI	YGGCCR	1 cut(s)	657
AcyI	GRCGYC	2 cut(s)	201, 745
AfaI	GTAC	3 cut(s)	7, 125, 772
AfiI	CCNNNNNNNGG	4 cut(s)	82, 211, 419, 716
AgsI	TTSAA	2 cut(s)	541, 579
AjuI	GAANNNNNNNTTGG	4 cut(s)	489, 521, 714, 746
AluBI	AGCT	5 cut(s)	183, 339, 522, 602, 725
AluI	AGCT	5 cut(s)	183, 339, 522, 602, 725
Alw26I	GTCTC	2 cut(s)	260, 387
AlwI	GGATC	2 cut(s)	107, 120
AoxI	GGCC	2 cut(s)	248, 657
ApeKI	GCWGC	4 cut(s)	180, 192, 290, 725
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	3 cut(s)	67, 288, 434
BamHI	GGATCC	1 cut(s)	112
BbsI	GAAGAC	2 cut(s)	141, 529
BbvI	GCAGC	4 cut(s)	192, 204, 302, 712
BceAI	ACGGC	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	2 cut(s)	260, 387
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	4 cut(s)	181, 193, 291, 726
BlsI	GCNGC	4 cut(s)	182, 194, 292, 727
Bme1390I	CCNGG	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	302, 493, 705
BpiI	GAAGAC	2 cut(s)	141, 529
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuMI	CCSGG	1 cut(s)	710
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	201, 745
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 211, 419, 716
Bse3DI	GCAATG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	4 cut(s)	82, 211, 419, 716
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	78, 266, 453
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	192, 204, 302, 712
BseYI	CCCAGC	1 cut(s)	606
BshFI	GGCC	2 cut(s)	250, 659
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	492, 710
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	82, 211, 419, 716
BsmAI	GTCTC	2 cut(s)	260, 387
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	250, 659
Bsp143I	GATC	3 cut(s)	112, 467, 761
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	2 cut(s)	22, 40
BspANI	GGCC	2 cut(s)	250, 659
BspCNI	CTCAG	3 cut(s)	79, 265, 452
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	2 cut(s)	208, 666
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	107, 120
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	112, 467, 761
BssNI	GRCGYC	2 cut(s)	201, 745
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	535
BstACI	GRCGYC	2 cut(s)	201, 745
BstC8I	GCNNGC	2 cut(s)	337, 604
BstDEI	CTNAG	3 cut(s)	87, 252, 439
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	3 cut(s)	115, 470, 764
BstMAI	GTCTC	2 cut(s)	260, 387
BstMBI	GATC	3 cut(s)	112, 467, 761
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 198, 608
BstSCI	CCNGG	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	192, 204, 302, 712
BstV2I	GAAGAC	2 cut(s)	141, 529
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	250, 659
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	337, 604
CciI	TCATGA	2 cut(s)	208, 666
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	2 cut(s)	190, 734
Csp6I	GTAC	3 cut(s)	6, 124, 771
CviAII	CATG	4 cut(s)	197, 209, 512, 667
CviQI	GTAC	3 cut(s)	6, 124, 771
DdeI	CTNAG	3 cut(s)	87, 252, 439
DpnI	GATC	3 cut(s)	114, 469, 763
DpnII	GATC	3 cut(s)	112, 467, 761
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	4 cut(s)	200, 212, 515, 670
FaiI	YATR	9 cut(s)	198, 210, 480, 513, 662, 668, 741, 755, 783
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	196, 208, 511, 666
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	181, 193, 291, 726
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	4 cut(s)	181, 193, 291, 726
GluI	GCNGC	4 cut(s)	181, 193, 291, 726
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	250, 659
HapII	CCGG	2 cut(s)	492, 710
HgaI	GACGC	2 cut(s)	190, 734
Hin1I	GRCGYC	2 cut(s)	201, 745
Hin1II	CATG	4 cut(s)	200, 212, 515, 670
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	107, 275, 425
HpaII	CCGG	2 cut(s)	492, 710
HphI	GGTGA	3 cut(s)	67, 288, 434
Hpy166II	GTNNAC	2 cut(s)	396, 445
Hpy188I	TCNGA	6 cut(s)	112, 255, 317, 430, 463, 489
Hpy188III	TCNNGA	3 cut(s)	209, 667, 759
Hpy8I	GTNNAC	2 cut(s)	396, 445
HpyAV	CCTTC	4 cut(s)	85, 398, 594, 686
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4V	TGCA	6 cut(s)	71, 290, 308, 335, 478, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 198, 608
HpyF3I	CTNAG	3 cut(s)	87, 252, 439
Hsp92I	GRCGYC	2 cut(s)	201, 745
Hsp92II	CATG	4 cut(s)	200, 212, 515, 670
Kzo9I	GATC	3 cut(s)	112, 467, 761
LmnI	GCTCC	2 cut(s)	177, 188
Lsp1109I	GCAGC	4 cut(s)	192, 204, 302, 712
LweI	GCATC	3 cut(s)	302, 493, 705
MaeIII	GTNAC	4 cut(s)	55, 62, 257, 650
MalI	GATC	3 cut(s)	114, 469, 763
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	3 cut(s)	112, 467, 761
MboII	GAAGA	6 cut(s)	146, 152, 155, 228, 529, 747
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	4 cut(s)	9, 285, 346, 546
MnlI	CCTC	5 cut(s)	148, 205, 229, 261, 423
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	665
MspI	CCGG	2 cut(s)	492, 710
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	189, 198, 608
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	112, 467, 761
NlaIII	CATG	4 cut(s)	200, 212, 515, 670
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	2 cut(s)	55, 62
PagI	TCATGA	2 cut(s)	208, 666
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	107, 275, 425
PkrI	GCNGC	4 cut(s)	182, 194, 292, 727
PshBI	ATTAAT	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	3 cut(s)	7, 125, 772
RsaNI	GTAC	3 cut(s)	6, 124, 771
RseI	CAYNNNNRTG	1 cut(s)	665
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	4 cut(s)	181, 193, 291, 726
Sau3AI	GATC	3 cut(s)	112, 467, 761
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	3 cut(s)	302, 493, 705
SmiMI	CAYNNNNRTG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	9, 285, 346, 546
SsiI	CCGC	2 cut(s)	22, 40
SspI	AATATT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	535
TaqI	TCGA	4 cut(s)	273, 353, 470, 760
TasI	AATT	4 cut(s)	9, 285, 346, 546
TfiI	GAWTC	3 cut(s)	107, 275, 425
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	55, 62
TseI	GCWGC	4 cut(s)	180, 192, 290, 725
Tsp45I	GTSAC	2 cut(s)	55, 62
TspDTI	ATGAA	3 cut(s)	7, 608, 742
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.