Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Reverse (-)

21730349 .. 21734985

Gene Structure 4637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGAATTGCTTAACCAGATCATTCTTCTCTAAACCTCTCACCCCAAAACCCATACCCCTTTACTTGACATTCTCTACCTTCAAAACATTCTCCCAAATCTTCCAGCAATGCGCCCACGGCAGAGCTCTCCACCCAGGAAAACAGGCCCACGCCCGCATGCTCATCTCCGGGTTCGACCCCACCGTCTTCGTTTCCAATTGCCTCATCCAAATGTACCTCAAATGCCGCGTTTTGCGCTATGCAGCCAAGGTGTTCGACGAAATGCCTCAAAGGGACACTGTGTCGTGGAACACCATGATTTTCGGGTACGCCGAGAGCGGCGACATGGGGCTTGCGCAGGCCTGTTTTGACGCAATGCCGGCGAGAGATGTGGTTTCTTGGAACTCGTTGGTTTCGGGGTACTTGCGCAACGGGGAGTGTTTCGAGACCATTGATGTGTATGTGAAGATGGTGAGTGCTGGGGTGGGATTCGACCGTACTACGTCTGCTGTTGTATTGAAAGCGTGTGCCGCCATGGAGGAGATTGAATTGGGGATTCAAATTCACTGTGTTTCGGTCAAGATGGCTTTCGACATTGATGTGTACACGGGGAGTGCTTTAGCTGATATGTATGCCAAGTGTAGGAGGCTAGATTGTTCACTTCGGGTTTTTCATGAACTGCCTGAGAAGAATTCGGTGTTGTGGAGCGCTGTGATTGCTGGTTCGGTGCAGAATGATAGGTTTGTGATGGCTGTGGAACTGTTTAATGAGATGCAGAGAGCCGGCGTTGGGGTGAGTCAAGCTACCTATGCTAGTGTTTTCAGGTCGTGTGCAGGGTTATCTGCGTATAGTTTAGGCACTCAGTTACATGGGCATGCTGTCAAAACACAGTTTCATTCTGATGTCGTGGTTGGTACTGCCACATTGGACATGTACGCAAAATCTGACAATGTAGCTGATGCCAGAAAGATGTTTAACTCGATGCCCAACCGAAATTTGCAGTCTTATAATGCAATGATAGTTGGCTATGCTCGAAATGGGCAAGGTTTTGAAGCTCTGCAGCTCTTTATGCTTCTGCAGAAGTCTGGCACTGGGTTAGATGAAATAACATTGTCTGGTGCCCTTAATGCTTGTGCAATGATCAAAGGACGCTTGGAGGGCCTTCAACTACAAGGATTAGTTATTAAGAGTAGTTTCAGATCCAATGTATGTGTAACAAATGCAATTCTCGACATGTATGGTAAATGCGGAGATGTGTTTGGAGCTTCTCATGTGTTTGATGAGATGGTACGAAGAGATGCCGTGTCTTGGAATGCAATTATTGCAGCTCACGAACAGAACAAAAATAAAGTGGGCACACTTTCCTGTTTTGTTTCCATGTTACGCTCAAGGATGGAACCTGACGAGTTCACCTATGGTAGTGTTTTAAAAGCTTGTGCAGGTCAGCGTTCTTTAAACCATGGTATGGAAATCCATAGCAAAATAATTAAATCTGGAAAGGGCACGAACTTGTTTATTGGTGGTGCCCTTGTTGACATGTACTCAAAGTGTGGAATGATGGAAGAGGCCGAAAAAGTACATCATAGAACAGAACAGACGATGGTCTCATGGAACGCGATCATATCTGGTTTTTCACTGCTTAAGCAAAATGAGGATGCACAGACCTTTTTTTCTCAGATGTTGGAAATAGGAGCAAAGCCTGATAATTTCACATATGCAACAGTGCTGGATACTTGTGCGAATTTGGCTACTGTGGGACTGGGGAAACAGATCCATGCTCAAATTATCAAGCATGAATTGCAATCAGATGTATATGTGACCAGCACCCTTGTTGATATGTATGCCAAGTGTGGTAACATGCAAGACTCTCTTCTTATGTTCAAGAAAGCACCTAAGCGGGATGCTGTGACATGGAATGCCATGATTTCTGGCTTTGCAAACTTTGGTCTCGGAGAAGATGCCCTTAGAATTTTTAAAAATATGCAGCTTGAGAATGTGGAGCCAAACCACGCAACATTTGTTTCCATCCTCCGAGCTTGTGGACACATTGGAAATGCTGAACAAGGTTTATACTACTTCCGGACAATGCTTTCTGACTATGGGTTGAAGCCTCAGTTGGAGCATTACTCGTGTATGGTGGATATTATAGGGAGGTCGGGCCAAGTCGATGAAGCACTGAGACTTATTCAAGATATGCCTTATGAACCTGATGATGTCATATGGAGAAATCTGCTTAGCATTTGCAAGCTTCATGGGAATGTACAAGTGGCTGAAATAGCAGCCAACTTTATTTGGCAATTGGATCCACAAGACTCTTCTACCTATGTTCTGTTGTCACATATATATGCTGAAGCTGGAATGTGGGGGGAGGTGTCAAAGATGAGGAGAAGAATGAGGTATGATGGGATGAAGAAGGAGCCGGGTTGCAGCTGGATTGAGGTAAAAGATGAAGTACATGCTTTTTTTGTTGGGGACAAGGCTCATCCAAGAAGTACGGAGCTATATGAGAGACTTGATTTGTTAGTTGTTGAGATGATGGGGATTGGTTATAGGCCAGAAATTGAATTTGTGTTTAGTGAGAATATGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

858

Amino Acids

95.63

Weight (kDa)

6.24

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	122 - 170	4.6e-06	PPR repeat family
PPR_2	PF13041	223 - 271	9.6e-08	PPR repeat family
PPR_2	PF13041	326 - 372	6.1e-06	PPR repeat family
PPR	PF01535	328 - 356	9.1e-06	PPR repeat
PPR_2	PF13041	426 - 473	1.3e-07	PPR repeat family
PPR_2	PF13041	527 - 574	5.2e-09	PPR repeat family
PPR_3	PF13812	626 - 674	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	627 - 674	1.2e-11	PPR repeat family
PPR	PF01535	629 - 658	1e-06	PPR repeat
PPR_long	PF17177	646 - 724	7.6e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	744 - 806	2.4e-21	E motif
Eplus_motif	PF20430	811 - 835	9.4e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	987
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc16I	TGCGCA	2 cut(s)	336, 407
Acc36I	ACCTGC	1 cut(s)	1409
AccB1I	GGYRCC	2 cut(s)	1097, 1502
AccB7I	CCANNNNNTGG	1 cut(s)	1444
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	2 cut(s)	228, 1595
AccIII	TCCGGA	1 cut(s)	2058
AciI	CCGC	6 cut(s)	154, 226, 318, 510, 1227, 1876
AclWI	GGATC	4 cut(s)	1173, 1744, 2276, 2289
AcsI	RAATTY	6 cut(s)	540, 670, 973, 1720, 1947, 2543
AcuI	CTGAAG	1 cut(s)	2349
AfeI	AGCGCT	1 cut(s)	688
AfiI	CCNNNNNNNGG	4 cut(s)	621, 768, 1287, 1444
AflII	CTTAAG	1 cut(s)	1619
AflIII	ACRYGT	3 cut(s)	909, 1212, 1515
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	2078, 2110
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	5 cut(s)	419, 1588, 1931, 2152, 2482
AlwI	GGATC	4 cut(s)	1173, 1744, 2276, 2289
Aor13HI	TCCGGA	1 cut(s)	2058
Aor51HI	AGCGCT	1 cut(s)	688
AoxI	GGCC	6 cut(s)	144, 339, 1138, 1545, 2137, 2531
ApeKI	GCWGC	6 cut(s)	242, 1039, 1304, 1963, 2258, 2406
ApoI	RAATTY	6 cut(s)	540, 670, 973, 1720, 1947, 2543
AspLEI	GCGC	5 cut(s)	113, 237, 337, 408, 689
AspS9I	GGNCC	3 cut(s)	145, 1138, 2137
AsuC2I	CCSGG	2 cut(s)	169, 2400
AsuHPI	GGTGA	4 cut(s)	31, 463, 784, 1381
BaeGI	GKGCMC	4 cut(s)	1102, 1337, 1484, 1507
BamHI	GGATCC	1 cut(s)	2281
BanI	GGYRCC	2 cut(s)	1097, 1502
BanII	GRGCYC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	2107
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	6 cut(s)	254, 1051, 1316, 1975, 2270, 2418
BceAI	ACGGC	2 cut(s)	133, 1265
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	1702
BclI	TGATCA	1 cut(s)	1119
BcnI	CCSGG	2 cut(s)	169, 2400
BcoDI	GTCTC	5 cut(s)	419, 1588, 1931, 2152, 2482
BfaI	CTAG	2 cut(s)	629, 792
BfmI	CTRYAG	2 cut(s)	1037, 1055
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	1619
BfuAI	ACCTGC	1 cut(s)	1409
BfuI	GTATCC	1 cut(s)	1702
BisI	GCNGC	9 cut(s)	226, 243, 319, 510, 1040, 1305, 1964, 2259, 2407
BlpI	GCTNAGC	1 cut(s)	2213
BlsI	GCNGC	9 cut(s)	227, 244, 320, 511, 1041, 1306, 1965, 2260, 2408
Bme1390I	CCNGG	3 cut(s)	135, 169, 2400
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgT120I	GGNCC	3 cut(s)	145, 1138, 2137
BmiI	GGNNCC	6 cut(s)	1099, 1377, 1504, 1980, 2283, 2397
BmrFI	CCNGG	3 cut(s)	135, 169, 2400
BmrI	ACTGGG	2 cut(s)	1080, 1748
BmsI	GCATC	7 cut(s)	741, 928, 951, 1267, 1624, 1870, 1927
BmuI	ACTGGG	2 cut(s)	1080, 1748
BoxI	GACNNNNGTC	1 cut(s)	1580
BpiI	GAAGAC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	2090, 2122
Bpu10I	CCTNAGC	1 cut(s)	1872
Bpu1102I	GCTNAGC	1 cut(s)	2213
BpuEI	CTTGAG	2 cut(s)	1351, 1988
BpuMI	CCSGG	2 cut(s)	169, 2400
BsaI	GGTCTC	3 cut(s)	419, 1588, 1931
BsaJI	CCNNGG	5 cut(s)	115, 133, 246, 513, 1438
BsaWI	WCCGGW	1 cut(s)	2058
Bsc4I	CCNNNNNNNGG	4 cut(s)	621, 768, 1287, 1444
Bse118I	RCCGGY	2 cut(s)	358, 761
Bse1I	ACTGG	2 cut(s)	1075, 1743
Bse3DI	GCAATG	4 cut(s)	113, 360, 999, 1122
BseAI	TCCGGA	1 cut(s)	2058
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	115, 133, 246, 513, 1438
BseGI	GGATG	7 cut(s)	204, 1377, 1639, 1885, 2004, 2391, 2461
BseLI	CCNNNNNNNGG	4 cut(s)	621, 768, 1287, 1444
BseMI	GCAATG	4 cut(s)	113, 360, 999, 1122
BseMII	CTCAG	5 cut(s)	654, 854, 1667, 2105, 2147
BseNI	ACTGG	2 cut(s)	1075, 1743
BseRI	GAGGAG	2 cut(s)	533, 2377
BseSI	GKGCMC	4 cut(s)	1102, 1337, 1484, 1507
BseXI	GCAGC	6 cut(s)	254, 1051, 1316, 1975, 2270, 2418
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	3 cut(s)	728, 831, 1437
Bsh1236I	CGCG	2 cut(s)	228, 1595
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	6 cut(s)	146, 341, 1140, 1547, 2139, 2533
BshNI	GGYRCC	2 cut(s)	1097, 1502
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	5 cut(s)	168, 359, 762, 2059, 2399
BslFI	GGGAC	3 cut(s)	287, 1749, 2465
BslI	CCNNNNNNNGG	4 cut(s)	621, 768, 1287, 1444
BsmAI	GTCTC	5 cut(s)	419, 1588, 1931, 2152, 2482
BsmFI	GGGAC	3 cut(s)	287, 1749, 2465
BsmI	GAATGC	2 cut(s)	1297, 1900
BsnI	GGCC	6 cut(s)	146, 341, 1140, 1547, 2139, 2533
Bso31I	GGTCTC	3 cut(s)	419, 1588, 1931
Bsp1286I	GDGCHC	5 cut(s)	127, 1102, 1337, 1484, 1507
Bsp13I	TCCGGA	1 cut(s)	2058
Bsp1407I	TGTACA	2 cut(s)	582, 2239
Bsp143I	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
Bsp1720I	GCTNAGC	1 cut(s)	2213
Bsp19I	CCATGG	2 cut(s)	513, 1438
BspACI	CCGC	6 cut(s)	154, 226, 318, 510, 1227, 1876
BspANI	GGCC	6 cut(s)	146, 341, 1140, 1547, 2139, 2533
BspCNI	CTCAG	5 cut(s)	655, 853, 1666, 2104, 2148
BspEI	TCCGGA	1 cut(s)	2058
BspFNI	CGCG	2 cut(s)	228, 1595
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	6 cut(s)	1099, 1377, 1504, 1980, 2283, 2397
BspMAI	CTGCAG	2 cut(s)	1041, 1059
BspMI	ACCTGC	1 cut(s)	1409
BspPI	GGATC	4 cut(s)	1173, 1744, 2276, 2289
BspT107I	GGYRCC	2 cut(s)	1097, 1502
BspTI	CTTAAG	1 cut(s)	1619
BspTNI	GGTCTC	3 cut(s)	419, 1588, 1931
BsrBI	CCGCTC	1 cut(s)	318
BsrDI	GCAATG	4 cut(s)	113, 360, 999, 1122
BsrFI	RCCGGY	2 cut(s)	358, 761
BsrGI	TGTACA	2 cut(s)	582, 2239
BsrI	ACTGG	2 cut(s)	1075, 1743
BssAI	RCCGGY	2 cut(s)	358, 761
BssECI	CCNNGG	5 cut(s)	115, 133, 246, 513, 1438
BssMI	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
BssSI	CACGAG	1 cut(s)	2107
BssT1I	CCWWGG	3 cut(s)	246, 513, 1438
Bst2BI	CACGAG	1 cut(s)	2107
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	8 cut(s)	184, 280, 476, 548, 741, 870, 1702, 1732
Bst6I	CTCTTC	5 cut(s)	1267, 1536, 1854, 2299, 2562
BstAFI	CTTAAG	1 cut(s)	1619
BstAPI	GCANNNNNTGC	2 cut(s)	1301, 1777
BstAUI	TGTACA	2 cut(s)	582, 2239
BstC8I	GCNNGC	8 cut(s)	154, 158, 333, 339, 360, 763, 855, 2225
BstDEI	CTNAG	8 cut(s)	663, 840, 1653, 1872, 1943, 2091, 2156, 2213
BstDSI	CCRYGG	3 cut(s)	115, 513, 1438
BstF5I	GGATG	7 cut(s)	204, 1377, 1639, 1885, 2004, 2391, 2461
BstFNI	CGCG	2 cut(s)	228, 1595
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	5 cut(s)	113, 237, 337, 408, 689
BstKTI	GATC	6 cut(s)	20, 1122, 1181, 1599, 1752, 2284
BstMAI	GTCTC	5 cut(s)	419, 1588, 1931, 2152, 2482
BstMBI	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
BstMCI	CGRYCG	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	7 cut(s)	160, 857, 913, 1216, 1519, 1840, 2438
BstPAI	GACNNNNGTC	1 cut(s)	1580
BstSCI	CCNGG	3 cut(s)	133, 167, 2398
BstSFI	CTRYAG	2 cut(s)	1037, 1055
BstSLI	GKGCMC	4 cut(s)	1102, 1337, 1484, 1507
BstUI	CGCG	2 cut(s)	228, 1595
BstV1I	GCAGC	6 cut(s)	254, 1051, 1316, 1975, 2270, 2418
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	3 cut(s)	1178, 1749, 2281
BstYI	RGATCY	3 cut(s)	1178, 1749, 2281
BsuI	GTATCC	1 cut(s)	1702
BsuRI	GGCC	6 cut(s)	146, 341, 1140, 1547, 2139, 2533
BtgI	CCRYGG	3 cut(s)	115, 513, 1438
BtsCI	GGATG	7 cut(s)	204, 1377, 1639, 1885, 2004, 2391, 2461
BtsI	GCAGTG	1 cut(s)	1613
BtsIMutI	CAGTG	6 cut(s)	276, 544, 1068, 1613, 1707, 2153
BveI	ACCTGC	1 cut(s)	1409
Cac8I	GCNNGC	8 cut(s)	154, 158, 333, 339, 360, 763, 855, 2225
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	5 cut(s)	113, 237, 337, 408, 689
Cfr10I	RCCGGY	2 cut(s)	358, 761
Cfr13I	GGNCC	3 cut(s)	145, 1138, 2137
CseI	GACGC	2 cut(s)	359, 1137
DdeI	CTNAG	8 cut(s)	663, 840, 1653, 1872, 1943, 2091, 2156, 2213
DpnI	GATC	6 cut(s)	19, 1121, 1180, 1598, 1751, 2283
DpnII	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
DraI	TTTAAA	3 cut(s)	1407, 1434, 1954
DrdI	GACNNNNNNGTC	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	280
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eam1104I	CTCTTC	5 cut(s)	1267, 1536, 1854, 2299, 2562
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	5 cut(s)	1267, 1536, 1854, 2299, 2562
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	246, 513, 1438
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	127
Eco31I	GGTCTC	3 cut(s)	419, 1588, 1931
Eco47III	AGCGCT	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	2349
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	1138
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	246, 513, 1438
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	3 cut(s)	246, 513, 1438
FalI	AAGNNNNNCTT	4 cut(s)	1833, 1865, 1926, 1958
FaqI	GGGAC	3 cut(s)	287, 1749, 2465
FauI	CCCGC	2 cut(s)	161, 1869
FauNDI	CATATG	2 cut(s)	1693, 2198
FbaI	TGATCA	1 cut(s)	1119
Fnu4HI	GCNGC	9 cut(s)	226, 243, 319, 510, 1040, 1305, 1964, 2259, 2407
FokI	GGATG	7 cut(s)	191, 1384, 1646, 1892, 1991, 2398, 2448
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	9 cut(s)	226, 243, 319, 510, 1040, 1305, 1964, 2259, 2407
FspBI	CTAG	2 cut(s)	629, 792
FspI	TGCGCA	2 cut(s)	336, 407
GlaI	GCGC	5 cut(s)	112, 236, 336, 407, 688
GluI	GCNGC	9 cut(s)	226, 243, 319, 510, 1040, 1305, 1964, 2259, 2407
GsaI	CCCAGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	6 cut(s)	146, 341, 1140, 1547, 2139, 2533
HapII	CCGG	5 cut(s)	168, 359, 762, 2059, 2399
HgaI	GACGC	2 cut(s)	359, 1137
HhaI	GCGC	5 cut(s)	113, 237, 337, 408, 689
Hin6I	GCGC	5 cut(s)	111, 235, 335, 406, 687
HinP1I	GCGC	5 cut(s)	111, 235, 335, 406, 687
HincII	GTYRAC	1 cut(s)	1513
HindII	GTYRAC	1 cut(s)	1513
HindIII	AAGCTT	2 cut(s)	1410, 2225
HinfI	GANTC	5 cut(s)	468, 535, 775, 1844, 2291
HpaII	CCGG	5 cut(s)	168, 359, 762, 2059, 2399
HphI	GGTGA	4 cut(s)	31, 463, 784, 1381
Hpy166II	GTNNAC	6 cut(s)	583, 585, 638, 1389, 1513, 2021
Hpy188I	TCNGA	8 cut(s)	880, 925, 1178, 1656, 1786, 1931, 2012, 2074
Hpy188III	TCNNGA	9 cut(s)	424, 559, 653, 1208, 1310, 1473, 1861, 2059, 2168
Hpy8I	GTNNAC	6 cut(s)	583, 585, 638, 1389, 1513, 2021
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	88, 1151, 2386
HpyCH4III	ACNGT	8 cut(s)	184, 280, 476, 548, 741, 870, 1702, 1732
HpyCH4IV	ACGT	1 cut(s)	482
HpyF3I	CTNAG	8 cut(s)	663, 840, 1653, 1872, 1943, 2091, 2156, 2213
HpySE526I	ACGT	1 cut(s)	482
HspAI	GCGC	5 cut(s)	111, 235, 335, 406, 687
Kpn2I	TCCGGA	1 cut(s)	2058
KroI	GCCGGC	2 cut(s)	358, 761
KroNI	GCCGGC	2 cut(s)	360, 763
Ksp22I	TGATCA	1 cut(s)	1119
Kzo9I	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
LmnI	GCTCC	7 cut(s)	684, 1241, 1670, 1978, 2098, 2395, 2476
Lsp1109I	GCAGC	6 cut(s)	254, 1051, 1316, 1975, 2270, 2418
LweI	GCATC	7 cut(s)	741, 928, 951, 1267, 1624, 1870, 1927
MaeI	CTAG	2 cut(s)	629, 792
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	7 cut(s)	843, 1192, 1359, 1795, 1832, 1885, 2313
MalI	GATC	6 cut(s)	19, 1121, 1180, 1598, 1751, 2283
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
MfeI	CAATTG	2 cut(s)	196, 2276
MflI	RGATCY	3 cut(s)	1178, 1749, 2281
MhlI	GDGCHC	5 cut(s)	127, 1102, 1337, 1484, 1507
MlyI	GAGTC	3 cut(s)	784, 1838, 2285
MmeI	TCCRAC	2 cut(s)	1641, 2076
MroI	TCCGGA	1 cut(s)	2058
MroNI	GCCGGC	2 cut(s)	358, 761
MslI	CAYNNNNRTG	7 cut(s)	209, 434, 578, 852, 879, 2235, 2322
MspA1I	CMGCKG	1 cut(s)	2409
MspCI	CTTAAG	1 cut(s)	1619
MspI	CCGG	5 cut(s)	168, 359, 762, 2059, 2399
MspR9I	CCNGG	3 cut(s)	135, 169, 2400
MunI	CAATTG	2 cut(s)	196, 2276
Mva1269I	GAATGC	2 cut(s)	1297, 1900
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	228, 1595
NaeI	GCCGGC	2 cut(s)	360, 763
NciI	CCSGG	2 cut(s)	169, 2400
NcoI	CCATGG	2 cut(s)	513, 1438
NdeI	CATATG	2 cut(s)	1693, 2198
NdeII	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
NgoMIV	GCCGGC	2 cut(s)	358, 761
NlaIV	GGNNCC	6 cut(s)	1099, 1377, 1504, 1980, 2283, 2397
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	3 cut(s)	1795, 1885, 2313
NsbI	TGCGCA	2 cut(s)	336, 407
NspI	RCATGY	7 cut(s)	160, 857, 913, 1216, 1519, 1840, 2438
PaeI	GCATGC	2 cut(s)	160, 857
PagI	TCATGA	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	341
PciI	ACATGT	3 cut(s)	909, 1212, 1515
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 309
PctI	GAATGC	2 cut(s)	1297, 1900
PdiI	GCCGGC	2 cut(s)	360, 763
PfeI	GAWTC	2 cut(s)	468, 535
PflMI	CCANNNNNTGG	1 cut(s)	1444
PkrI	GCNGC	9 cut(s)	227, 244, 320, 511, 1041, 1306, 1965, 2260, 2408
PleI	GAGTC	3 cut(s)	783, 1838, 2285
PpsI	GAGTC	3 cut(s)	783, 1838, 2285
PscI	ACATGT	3 cut(s)	909, 1212, 1515
PshAI	GACNNNNGTC	1 cut(s)	1580
PsiI	TTATAA	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	6 cut(s)	1099, 1377, 1504, 1980, 2283, 2397
PspPI	GGNCC	3 cut(s)	145, 1138, 2137
PstI	CTGCAG	2 cut(s)	1041, 1059
PsuI	RGATCY	3 cut(s)	1178, 1749, 2281
PvuII	CAGCTG	1 cut(s)	2409
RseI	CAYNNNNRTG	7 cut(s)	209, 434, 578, 852, 879, 2235, 2322
SacI	GAGCTC	1 cut(s)	127
SatI	GCNGC	9 cut(s)	226, 243, 319, 510, 1040, 1305, 1964, 2259, 2407
Sau3AI	GATC	6 cut(s)	17, 1119, 1178, 1596, 1749, 2281
Sau96I	GGNCC	3 cut(s)	145, 1138, 2137
SchI	GAGTC	3 cut(s)	784, 1838, 2285
ScrFI	CCNGG	3 cut(s)	135, 169, 2400
SduI	GDGCHC	5 cut(s)	127, 1102, 1337, 1484, 1507
SfaNI	GCATC	7 cut(s)	741, 928, 951, 1267, 1624, 1870, 1927
SfcI	CTRYAG	2 cut(s)	1037, 1055
SmiMI	CAYNNNNRTG	7 cut(s)	209, 434, 578, 852, 879, 2235, 2322
SmlI	CTYRAG	3 cut(s)	1366, 1619, 1967
SmoI	CTYRAG	3 cut(s)	1366, 1619, 1967
SphI	GCATGC	2 cut(s)	160, 857
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	6 cut(s)	154, 226, 318, 510, 1227, 1876
SspMI	CTAG	2 cut(s)	629, 792
SstI	GAGCTC	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	133, 167, 2398
StyI	CCWWGG	3 cut(s)	246, 513, 1438
TaaI	ACNGT	8 cut(s)	184, 280, 476, 548, 741, 870, 1702, 1732
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	9 cut(s)	174, 255, 423, 471, 570, 959, 1012, 1209, 2145
TaqII	GACCGA	1 cut(s)	544
TatI	WGTACW	5 cut(s)	582, 1518, 1555, 2239, 2431
TauI	GCSGC	3 cut(s)	228, 321, 512
TfiI	GAWTC	2 cut(s)	468, 535
TscAI	CASTG	6 cut(s)	283, 551, 1075, 1620, 1707, 2160
TseFI	GTSAC	3 cut(s)	1795, 1885, 2313
TseI	GCWGC	6 cut(s)	242, 1039, 1304, 1963, 2258, 2406
Tsp45I	GTSAC	3 cut(s)	1795, 1885, 2313
TspGWI	ACGGA	1 cut(s)	2489
TspRI	CASTG	6 cut(s)	283, 551, 1075, 1620, 1707, 2160
Van91I	CCANNNNNTGG	1 cut(s)	1444
Vha464I	CTTAAG	1 cut(s)	1619
XapI	RAATTY	6 cut(s)	540, 670, 973, 1720, 1947, 2543
XceI	RCATGY	7 cut(s)	160, 857, 913, 1216, 1519, 1840, 2438
XspI	CTAG	2 cut(s)	629, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.