Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Forward (+)

75553102 .. 75555759

Gene Structure 2658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021450

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGCTACTCCTCACCATCATCTCCTTCACACTTGCTTAATCAGACTCTTCTCCTTCCCTCTAAAACCTCTCTCCCCAAAACCCCAACCCCTATTTTTCACATTCTCTACTCTCACTCGCCCCAACCAAACAACACCCACCACAAATTTCAAAACTTACTCCCAAATTTTCCAGCAATGCTCCCATTCCAGAGCTCTGAACCCGGGAAAACAGGCCCACGCCCGCATGCTCGTTTCCGGGTTCGAGCCCACCGTCTTCGTCACGAACTGTCTCATCCAAATGTATGTGAAATGCTGGGTCTTGGGTTATGCAGCCAAGGTGTTCGATGAAATGCCTCAACGGGACACGGTGTCGTGGAACACCATGATTTTCGGGTATGCCGAGAGTGGCGAAATGGGTTCTGCGCAGGCTTGCTTTGACGCCATGCCGGAGAGAGATGTGGTTTCTTGGAATTCGTTGATTTCGGGGTACTTGCAGAATGGGGAGTGTTTGAAGTCCATTGATGTTTATCTGAAGATGGGGAATGCAGGGGTGGGATGTGACCGTACTACATCTGCTGTTGTTCTGAAAACGTGTGCGGTGATGGAAGAGGTTGAATTGGGGATTCAAATTCACTGTGTTGCGGTCAAAATGGCTTTTGACATTGATGTGTTCACGGGTAGTGCTTTAGCCGACATGTATGGCAAGTGTAAAAGATTGGATTGTTCGCTACAGGTTTTTCGTGAATTGCCTGAAAAGAATTCAGTCTCGTGGAGCGCTGTAATTGCAGGTTCGGTTCAGAATGATAGGTTTGCTATGGGTATAGAACTATTTAATGAGATGCAGAAAGCAGGCATTGGGGTGAGCCAGTCTACCTATGCTAGTGTTTTCAGGTCGTGTGCAGGATTATCCGCGTACAGCTTAGGCACTCAGTTACATGGGCATGCTATAAAAACACAATTTCATTCTGATGTAGTAGTTGGCACTGCCACATTGGACATGTACGCAAAATGTGACAATGTAGGCGATGCCAGAAAGATATTTAACTCAATGCCAAACCGAAGTTTGCAGTCATATAATGCAATGATAGTTGGCTATGCTCGAAATGGGCAAGGTTTTGAAGCGCTGCAGCTGTTTATGCTTCTGCAGAAGTCTGGCATTGGTTTTGATGAAATAACATTGTCTGGTGCACTTAGTGCTTGTGCAATGATCAAAGGACACTTGGAGGGCCTTCAACTACAAGGATTAGTTGTTAAGAGTAGCTTCAGATCCAATGTATGTGTAACAAATGCCATTCTCGACATGTATGGTAAATGTGGAGATGTGTTGGGAGCTTCTTATGTGTTTGATGAGATGGTAAGAAGAGATGCTGTGTCTTGGAATGCAATCATTGCAGCTCAAGGACAGAACGAAAATAAAGAGGAAACACTTTCTTGTTTTGTCTCCATGCTCCGCTCAAGGATGGAACCTGACGAGTTCACCTATGGTAGTGTTTTAAGAGCTTGTGCAGGTCAGCATTCTTTAAACCATGGTATGGAAATCCATAGCAGAATAATTAAATCTGGAATGGGCATGAACTTTTTTATTGGAGGTGCCCTTGTTGATATGTACTCCAAGTGTGGAATGATGGAAGAGGCTGAAAAAATACATCACAGAACAGAACACACGATGGTCTCATGGAATGCAATCATATCTGGTTTCTCACTGCTGAAGCAAAATGAGGATGCACAGACATTTTTTTCTCAGATGTTGGAGATGGGAGCAAAGCCTGATAATTTCACATATGCAACGGTGCTTGATACCTGTGCTAATTTGGCTACTGTTGGACTTGGGATGCAGATCCATGCTCAAATTATCAAGCATGAATTGCAATCGGATGTATATGTGACCAGCACTCTTGTTGATATGTACGCCAAGTGTGGTAACATGCAAGACTCTCATCTAATGTTCAAGAAAGCACCTAAGCGGGATGCTGTTACATGGAATGCCATGATTTCTGGTTATGCAAACTATGGTCTCGGAGAAGATGCCCTTAGAATTTTTGACAATATGCAGCTTGAGAATGTGGAGCCAAACCACGTAACTTTTGTTTCTGTCCTCCGAGCCTGTGGACATATTGGAAATGCTGAAAAAGGTTTATACTACTTCCGCACAATGCTTTCTGACCATGGGTTGAAACCTCAATTGGAGCATTACTCGTGTATGGTGGATATTATAGGAAGGTCAGGCCAAGTAGATCAAGCACTGAGGCTTATTCAAGATATGCCTTTTGAACCTGATGATGTAATATGGAGAACTCTGCTCAGCATTTGCAAGCTTCATGGGAATGCTCATCCAAGAAGTGAGGAGGTATATGAGAGACTTGATTTGTTAGTTGTTGAGATGATGAGGATTGGGTATAGGCCAGAAATTGAATTTGTGCTTGATGAGGAGATGGAAGAGCAGGAGCACCTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

813

Amino Acids

90.51

Weight (kDa)

5.8

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	145 - 193	1.5e-06	PPR repeat family
PPR_2	PF13041	246 - 294	1.9e-07	PPR repeat family
PPR	PF01535	351 - 380	3.1e-06	PPR repeat
PPR_2	PF13041	449 - 496	1.6e-08	PPR repeat family
PPR_2	PF13041	550 - 597	5.2e-10	PPR repeat family
PPR_3	PF13812	649 - 697	7.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	650 - 697	6.9e-13	PPR repeat family
PPR	PF01535	652 - 681	5.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	2 cut(s)	758, 1478
AccB1I	GGYRCC	1 cut(s)	1571
AccB7I	CCANNNNNTGG	1 cut(s)	1513
AccBSI	CCGCTC	1 cut(s)	1434
AccI	GTMKAC	1 cut(s)	851
AccII	CGCG	1 cut(s)	893
AciI	CCGC	7 cut(s)	223, 578, 623, 891, 1432, 1945, 2128
AclWI	GGATC	2 cut(s)	1242, 1813
AcsI	RAATTY	7 cut(s)	145, 165, 451, 609, 739, 2016, 2393
AcuI	CTGAAG	3 cut(s)	533, 1228, 1709
AcyI	GRCGYC	1 cut(s)	420
AdeI	CACNNNGTG	1 cut(s)	1175
AfaI	GTAC	6 cut(s)	470, 547, 896, 983, 1589, 1889
AfeI	AGCGCT	2 cut(s)	757, 1104
AfiI	CCNNNNNNNGG	1 cut(s)	1513
AflIII	ACRYGT	4 cut(s)	572, 675, 978, 1281
AhdI	GACNNNNNGTC	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	2147, 2179
AluBI	AGCT	9 cut(s)	194, 900, 1111, 1242, 1313, 1376, 1481, 2035, 2296
AluI	AGCT	9 cut(s)	194, 900, 1111, 1242, 1313, 1376, 1481, 2035, 2296
Alw21I	GWGCWC	3 cut(s)	196, 1171, 2430
Alw26I	GTCTC	6 cut(s)	275, 751, 1426, 1657, 2000, 2332
Alw44I	GTGCAC	1 cut(s)	1167
AlwI	GGATC	2 cut(s)	1242, 1813
Ama87I	CYCGRG	1 cut(s)	202
Aor51HI	AGCGCT	2 cut(s)	757, 1104
AoxI	GGCC	4 cut(s)	213, 1207, 2206, 2381
ApaLI	GTGCAC	1 cut(s)	1167
ApeKI	GCWGC	5 cut(s)	311, 1105, 1108, 1373, 2032
ApoI	RAATTY	7 cut(s)	145, 165, 451, 609, 739, 2016, 2393
AspLEI	GCGC	3 cut(s)	406, 758, 1105
AspS9I	GGNCC	2 cut(s)	214, 1207
AsuC2I	CCSGG	3 cut(s)	203, 204, 238
AsuHPI	GGTGA	4 cut(s)	5, 592, 853, 1450
AvaI	CYCGRG	1 cut(s)	202
BaeGI	GKGCMC	2 cut(s)	1171, 1576
BanI	GGYRCC	1 cut(s)	1571
BanII	GRGCYC	2 cut(s)	196, 249
BauI	CACGAG	2 cut(s)	748, 2176
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	3 cut(s)	196, 1171, 2430
BbvI	GCAGC	5 cut(s)	323, 1092, 1120, 1385, 2044
BccI	CCATC	9 cut(s)	24, 511, 577, 1327, 1435, 1600, 1642, 1729, 2407
BclI	TGATCA	1 cut(s)	1188
BcnI	CCSGG	3 cut(s)	203, 204, 238
BcoDI	GTCTC	6 cut(s)	275, 751, 1426, 1657, 2000, 2332
BfaI	CTAG	2 cut(s)	861, 2432
BfmI	CTRYAG	3 cut(s)	710, 1106, 1124
BfoI	RGCGCY	2 cut(s)	759, 1106
BfuAI	ACCTGC	2 cut(s)	758, 1478
BisI	GCNGC	5 cut(s)	312, 1106, 1109, 1374, 2033
BlpI	GCTNAGC	1 cut(s)	2282
BlsI	GCNGC	5 cut(s)	313, 1107, 1110, 1375, 2034
Bme1390I	CCNGG	3 cut(s)	203, 204, 238
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	214, 1207
BmiI	GGNNCC	3 cut(s)	1446, 1573, 2049
BmrFI	CCNGG	3 cut(s)	203, 204, 238
BmsI	GCATC	7 cut(s)	810, 997, 1336, 1693, 1803, 1939, 1996
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	2159, 2191
Bpu10I	CCTNAGC	2 cut(s)	901, 1941
Bpu1102I	GCTNAGC	1 cut(s)	2282
BpuEI	CTTGAG	3 cut(s)	1362, 1420, 2057
BpuMI	CCSGG	3 cut(s)	203, 204, 238
BsaAI	YACGTR	1 cut(s)	2059
BsaBI	GATNNNNATC	2 cut(s)	507, 1817
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	2 cut(s)	1657, 2000
BsaJI	CCNNGG	4 cut(s)	202, 315, 1507, 2146
Bsc4I	CCNNNNNNNGG	1 cut(s)	1513
Bse1I	ACTGG	1 cut(s)	847
Bse3DI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
Bse8I	GATNNNNATC	2 cut(s)	507, 1817
BseDI	CCNNGG	4 cut(s)	202, 315, 1507, 2146
BseGI	GGATG	8 cut(s)	273, 542, 1446, 1708, 1818, 1861, 1954, 2311
BseJI	GATNNNNATC	2 cut(s)	507, 1817
BseLI	CCNNNNNNNGG	1 cut(s)	1513
BseMI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
BseMII	CTCAG	4 cut(s)	923, 1736, 2216, 2296
BseNI	ACTGG	1 cut(s)	847
BseRI	GAGGAG	2 cut(s)	2339, 2423
BseSI	GKGCMC	2 cut(s)	1171, 1576
BseXI	GCAGC	5 cut(s)	323, 1092, 1120, 1385, 2044
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	2 cut(s)	900, 1506
Bsh1236I	CGCG	1 cut(s)	893
BshFI	GGCC	4 cut(s)	215, 1209, 2208, 2383
BshNI	GGYRCC	1 cut(s)	1571
BsiHKAI	GWGCWC	3 cut(s)	196, 1171, 2430
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	203, 237, 428
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	1513
BsmAI	GTCTC	6 cut(s)	275, 751, 1426, 1657, 2000, 2332
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	6 cut(s)	529, 1366, 1495, 1666, 1969, 2311
BsnI	GGCC	4 cut(s)	215, 1209, 2208, 2383
Bso31I	GGTCTC	2 cut(s)	1657, 2000
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2430
Bsp143I	GATC	4 cut(s)	1188, 1247, 1818, 2215
Bsp1720I	GCTNAGC	1 cut(s)	2282
Bsp19I	CCATGG	2 cut(s)	1507, 2146
BspACI	CCGC	7 cut(s)	223, 578, 623, 891, 1432, 1945, 2128
BspANI	GGCC	4 cut(s)	215, 1209, 2208, 2383
BspCNI	CTCAG	4 cut(s)	922, 1735, 2217, 2295
BspFNI	CGCG	1 cut(s)	893
BspLI	GGNNCC	3 cut(s)	1446, 1573, 2049
BspMAI	CTGCAG	2 cut(s)	1110, 1128
BspMI	ACCTGC	2 cut(s)	758, 1478
BspPI	GGATC	2 cut(s)	1242, 1813
BspQI	GCTCTTC	1 cut(s)	2412
BspT107I	GGYRCC	1 cut(s)	1571
BspTNI	GGTCTC	2 cut(s)	1657, 2000
BsrBI	CCGCTC	1 cut(s)	1434
BsrDI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
BsrI	ACTGG	1 cut(s)	847
BssECI	CCNNGG	4 cut(s)	202, 315, 1507, 2146
BssMI	GATC	4 cut(s)	1188, 1247, 1818, 2215
BssNI	GRCGYC	1 cut(s)	420
BssSI	CACGAG	2 cut(s)	748, 2176
BssT1I	CCWWGG	3 cut(s)	315, 1507, 2146
Bst2BI	CACGAG	2 cut(s)	748, 2176
Bst4CI	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
Bst6I	CTCTTC	5 cut(s)	53, 582, 1336, 1605, 2412
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	3 cut(s)	1175, 1370, 1846
BstBAI	YACGTR	1 cut(s)	2059
BstC8I	GCNNGC	7 cut(s)	223, 227, 408, 412, 832, 924, 2294
BstDEI	CTNAG	8 cut(s)	901, 909, 1172, 1722, 1941, 2012, 2225, 2282
BstDSI	CCRYGG	2 cut(s)	1507, 2146
BstF5I	GGATG	8 cut(s)	273, 542, 1446, 1708, 1818, 1861, 1954, 2311
BstFNI	CGCG	1 cut(s)	893
BstH2I	RGCGCY	2 cut(s)	759, 1106
BstHHI	GCGC	3 cut(s)	406, 758, 1105
BstKTI	GATC	4 cut(s)	1191, 1250, 1821, 2218
BstMAI	GTCTC	6 cut(s)	275, 751, 1426, 1657, 2000, 2332
BstMBI	GATC	4 cut(s)	1188, 1247, 1818, 2215
BstMWI	GCNNNNNNNGC	6 cut(s)	764, 1117, 1175, 1370, 1793, 1846
BstNSI	RCATGY	6 cut(s)	229, 679, 926, 982, 1285, 1909
BstSCI	CCNGG	3 cut(s)	201, 202, 236
BstSFI	CTRYAG	3 cut(s)	710, 1106, 1124
BstSLI	GKGCMC	2 cut(s)	1171, 1576
BstUI	CGCG	1 cut(s)	893
BstV1I	GCAGC	5 cut(s)	323, 1092, 1120, 1385, 2044
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	1247, 1818
BstYI	RGATCY	2 cut(s)	1247, 1818
BsuRI	GGCC	4 cut(s)	215, 1209, 2208, 2383
BtgI	CCRYGG	2 cut(s)	1507, 2146
BtgZI	GCGATG	1 cut(s)	1020
BtsCI	GGATG	8 cut(s)	273, 542, 1446, 1708, 1818, 1861, 1954, 2311
BtsI	GCAGTG	2 cut(s)	963, 1682
BtsIMutI	CAGTG	4 cut(s)	613, 963, 1682, 2222
BveI	ACCTGC	2 cut(s)	758, 1478
Cac8I	GCNNGC	7 cut(s)	223, 227, 408, 412, 832, 924, 2294
CfoI	GCGC	3 cut(s)	406, 758, 1105
Cfr13I	GGNCC	2 cut(s)	214, 1207
Cfr9I	CCCGGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	6 cut(s)	469, 546, 895, 982, 1588, 1888
CviQI	GTAC	6 cut(s)	469, 546, 895, 982, 1588, 1888
DdeI	CTNAG	8 cut(s)	901, 909, 1172, 1722, 1941, 2012, 2225, 2282
DpnI	GATC	4 cut(s)	1190, 1249, 1820, 2217
DpnII	GATC	4 cut(s)	1188, 1247, 1818, 2215
DraI	TTTAAA	1 cut(s)	1503
DraIII	CACNNNGTG	1 cut(s)	1175
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	5 cut(s)	53, 582, 1336, 1605, 2412
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	5 cut(s)	53, 582, 1336, 1605, 2412
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	315, 1507, 2146
Eco24I	GRGCYC	2 cut(s)	196, 249
Eco31I	GGTCTC	2 cut(s)	1657, 2000
Eco47III	AGCGCT	2 cut(s)	757, 1104
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	533, 1228, 1709
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	1207
EcoRI	GAATTC	2 cut(s)	451, 739
EcoT14I	CCWWGG	3 cut(s)	315, 1507, 2146
EcoT38I	GRGCYC	2 cut(s)	196, 249
ErhI	CCWWGG	3 cut(s)	315, 1507, 2146
FalI	AAGNNNNNCTT	4 cut(s)	1226, 1258, 1995, 2027
FaqI	GGGAC	1 cut(s)	356
FauI	CCCGC	2 cut(s)	230, 1938
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	1 cut(s)	1188
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	5 cut(s)	312, 1106, 1109, 1374, 2033
FokI	GGATG	8 cut(s)	260, 549, 1453, 1715, 1825, 1868, 1961, 2298
FriOI	GRGCYC	2 cut(s)	196, 249
Fsp4HI	GCNGC	5 cut(s)	312, 1106, 1109, 1374, 2033
FspBI	CTAG	2 cut(s)	861, 2432
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	3 cut(s)	405, 757, 1104
GluI	GCNGC	5 cut(s)	312, 1106, 1109, 1374, 2033
GsaI	CCCAGC	1 cut(s)	298
HaeII	RGCGCY	2 cut(s)	759, 1106
HaeIII	GGCC	4 cut(s)	215, 1209, 2208, 2383
HapII	CCGG	3 cut(s)	203, 237, 428
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	3 cut(s)	406, 758, 1105
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	3 cut(s)	404, 756, 1103
HinP1I	GCGC	3 cut(s)	404, 756, 1103
HindIII	AAGCTT	1 cut(s)	2294
HinfI	GANTC	3 cut(s)	45, 604, 1913
HpaII	CCGG	3 cut(s)	203, 237, 428
HphI	GGTGA	4 cut(s)	5, 592, 853, 1450
Hpy166II	GTNNAC	5 cut(s)	654, 852, 1169, 1458, 2090
Hpy188III	TCNNGA	7 cut(s)	189, 262, 722, 1277, 1542, 1930, 2237
Hpy8I	GTNNAC	5 cut(s)	654, 852, 1169, 1458, 2090
HpyAV	CCTTC	4 cut(s)	35, 64, 1220, 2193
HpyCH4III	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
HpyCH4IV	ACGT	2 cut(s)	572, 2058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	764, 1117, 1175, 1370, 1793, 1846
HpyF3I	CTNAG	8 cut(s)	901, 909, 1172, 1722, 1941, 2012, 2225, 2282
HpySE526I	ACGT	2 cut(s)	572, 2058
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	3 cut(s)	404, 756, 1103
Ksp22I	TGATCA	1 cut(s)	1188
Kzo9I	GATC	4 cut(s)	1188, 1247, 1818, 2215
LguI	GCTCTTC	1 cut(s)	2412
LmnI	GCTCC	8 cut(s)	185, 753, 1310, 1434, 1739, 2047, 2167, 2425
Lsp1109I	GCAGC	5 cut(s)	323, 1092, 1120, 1385, 2044
LweI	GCATC	7 cut(s)	810, 997, 1336, 1693, 1803, 1939, 1996
MaeI	CTAG	2 cut(s)	861, 2432
MaeII	ACGT	2 cut(s)	572, 2058
MaeIII	GTNAC	9 cut(s)	259, 539, 912, 992, 1261, 1864, 1901, 1954, 2059
MalI	GATC	4 cut(s)	1190, 1249, 1820, 2217
MbiI	CCGCTC	1 cut(s)	1434
MboI	GATC	4 cut(s)	1188, 1247, 1818, 2215
MboII	GAAGA	8 cut(s)	40, 247, 526, 599, 1353, 1622, 2015, 2429
MfeI	CAATTG	1 cut(s)	2162
MflI	RGATCY	2 cut(s)	1247, 1818
MhlI	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2430
MlyI	GAGTC	2 cut(s)	39, 1907
MmeI	TCCRAC	2 cut(s)	1710, 1783
MseI	TTAA	7 cut(s)	38, 813, 1023, 1233, 1475, 1502, 1536
MslI	CAYNNNNRTG	6 cut(s)	278, 647, 839, 921, 948, 2304
MspA1I	CMGCKG	1 cut(s)	1111
MspI	CCGG	3 cut(s)	203, 237, 428
MspR9I	CCNGG	3 cut(s)	203, 204, 238
MunI	CAATTG	1 cut(s)	2162
Mva1269I	GAATGC	6 cut(s)	529, 1366, 1495, 1666, 1969, 2311
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	6 cut(s)	764, 1117, 1175, 1370, 1793, 1846
NciI	CCSGG	3 cut(s)	203, 204, 238
NcoI	CCATGG	2 cut(s)	1507, 2146
NdeI	CATATG	1 cut(s)	1762
NdeII	GATC	4 cut(s)	1188, 1247, 1818, 2215
NlaIV	GGNNCC	3 cut(s)	1446, 1573, 2049
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	4 cut(s)	259, 539, 992, 1864
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	6 cut(s)	229, 679, 926, 982, 1285, 1909
PaeI	GCATGC	2 cut(s)	229, 926
PciI	ACATGT	3 cut(s)	675, 978, 1281
PciSI	GCTCTTC	1 cut(s)	2412
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 378
PctI	GAATGC	6 cut(s)	529, 1366, 1495, 1666, 1969, 2311
PfeI	GAWTC	1 cut(s)	604
PflMI	CCANNNNNTGG	1 cut(s)	1513
PkrI	GCNGC	5 cut(s)	313, 1107, 1110, 1375, 2034
PleI	GAGTC	2 cut(s)	39, 1907
PpsI	GAGTC	2 cut(s)	39, 1907
Ppu21I	YACGTR	1 cut(s)	2059
PscI	ACATGT	3 cut(s)	675, 978, 1281
Psp124BI	GAGCTC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	1446, 1573, 2049
PspPI	GGNCC	2 cut(s)	214, 1207
PstI	CTGCAG	2 cut(s)	1110, 1128
PsuI	RGATCY	2 cut(s)	1247, 1818
PvuII	CAGCTG	1 cut(s)	1111
RsaI	GTAC	6 cut(s)	470, 547, 896, 983, 1589, 1889
RsaNI	GTAC	6 cut(s)	469, 546, 895, 982, 1588, 1888
RseI	CAYNNNNRTG	6 cut(s)	278, 647, 839, 921, 948, 2304
SacI	GAGCTC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	2412
SaqAI	TTAA	7 cut(s)	38, 813, 1023, 1233, 1475, 1502, 1536
SatI	GCNGC	5 cut(s)	312, 1106, 1109, 1374, 2033
Sau3AI	GATC	4 cut(s)	1188, 1247, 1818, 2215
Sau96I	GGNCC	2 cut(s)	214, 1207
SchI	GAGTC	2 cut(s)	39, 1907
ScrFI	CCNGG	3 cut(s)	203, 204, 238
SduI	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2430
SfaNI	GCATC	7 cut(s)	810, 997, 1336, 1693, 1803, 1939, 1996
SfcI	CTRYAG	3 cut(s)	710, 1106, 1124
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	6 cut(s)	278, 647, 839, 921, 948, 2304
SmlI	CTYRAG	3 cut(s)	1377, 1435, 2036
SmoI	CTYRAG	3 cut(s)	1377, 1435, 2036
SphI	GCATGC	2 cut(s)	229, 926
SsiI	CCGC	7 cut(s)	223, 578, 623, 891, 1432, 1945, 2128
SspMI	CTAG	2 cut(s)	861, 2432
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	201, 202, 236
StyI	CCWWGG	3 cut(s)	315, 1507, 2146
TaaI	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
TaiI	ACGT	2 cut(s)	575, 2061
TaqI	TCGA	4 cut(s)	243, 324, 1081, 1278
TatI	WGTACW	1 cut(s)	1587
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	7 cut(s)	38, 813, 1023, 1233, 1475, 1502, 1536
Tru9I	TTAA	7 cut(s)	38, 813, 1023, 1233, 1475, 1502, 1536
TscAI	CASTG	4 cut(s)	620, 970, 1689, 2229
TseFI	GTSAC	4 cut(s)	259, 539, 992, 1864
TseI	GCWGC	5 cut(s)	311, 1105, 1108, 1373, 2032
Tsp45I	GTSAC	4 cut(s)	259, 539, 992, 1864
TspDTI	ATGAA	6 cut(s)	342, 932, 1164, 1568, 1857, 2288
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	4 cut(s)	620, 970, 1689, 2229
Van91I	CCANNNNNTGG	1 cut(s)	1513
VneI	GTGCAC	1 cut(s)	1167
XapI	RAATTY	7 cut(s)	145, 165, 451, 609, 739, 2016, 2393
XceI	RCATGY	6 cut(s)	229, 679, 926, 982, 1285, 1909
XmaI	CCCGGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	2 cut(s)	861, 2432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.