Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Reverse (-)

5473859 .. 5474820

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1077900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAGCTGCTCACCATCTCTCTCAGACATGGTTAACCAGAATCTTCTCCTTCTCTCCCAAATCTCTCTACCCACAAACGCAAACCTCTTTTTCTCTCTCTACTTTCACTCACAGTCGCGACCAACCAATACCCGTCAACAATTTCAAAACTTTCTCCCACATTTTCCAGCAATGCTCCCACGGCCGAGCTCTGAATCCGGGCAAACAGGCCCACGCTCGCATGATCGTTTCTGTGTTCGATCCCACTGTGTTCGTTACGAATTGTTTAATCCAGATGTACGTGAAATGTGGGGTTTTGGAGTACGCAGGTAAGGTGTTCTATGGAATGCCGGAGACGGATATGGTGTCGTGGAACACCATGGTTTTTGGAGATGTGGTTTCGTGGAATTCTTTGATTTCCGGGTACTTGCAGAATGGTGAGTATTGGAAGTCTGTTGAAGTTTATGTTAAAATGGTGAGTGTGGGTGTGGAATTTGATTGTACTACGACTGCGGTTGTTCTGAAAGTGTGTTCTGTTATGGAAGAGATTGGTTTGGGTATTCAAATTCATTGTTTCTTGGTCAAGATGGGTTTTGACATTGATGTGGTAACTGGAAGTGCTTTAGTAGATATGTTTGGGAAGTGTAAGCAATTAGATAGTGCACTCAAACCCTTCCGTGAGTTTCCCGAAAAGAATTGGGTTTCTTGGAGCGCGGTAATTGCAGGTTCTGTTCAGAATGATCAGTTCGTTAAGGGTATAGAACTGTTTAATGAGATGCAGAAAGCTGGAGTCGGAGTGAGCCAATCTACGTATGCTAGTGTTTTCAGGTCCTGTGCAGGATTATCGGCATATAGGTTAGGCACTCAGTTTCATGGACATGCTATAAAGACGGACTTCCATTTGATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

298

Amino Acids

33.15

Weight (kDa)

7.62

Isoelectric Point (pI)

30.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	125 - 171	9e-08	PPR repeat family
PPR	PF01535	127 - 157	7.4e-07	PPR repeat
PPR_2	PF13041	226 - 273	2.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	299, 695
AccII	CGCG	2 cut(s)	120, 695
AciI	CCGC	2 cut(s)	494, 695
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	388, 473, 546
AfaI	GTAC	4 cut(s)	281, 305, 407, 484
AgsI	TTSAA	3 cut(s)	148, 440, 545
AluBI	AGCT	3 cut(s)	8, 191, 767
AluI	AGCT	3 cut(s)	8, 191, 767
Alw21I	GWGCWC	2 cut(s)	193, 646
Alw26I	GTCTC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	2 cut(s)	710, 813
AoxI	GGCC	2 cut(s)	184, 210
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	3 cut(s)	388, 473, 546
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	211, 810
AsuC2I	CCSGG	2 cut(s)	201, 403
AsuHPI	GGTGA	3 cut(s)	5, 431, 469
AvaII	GGWCC	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	193, 646
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	24, 562
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	807, 841
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	2 cut(s)	201, 403
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	798
BfuAI	ACCTGC	2 cut(s)	299, 695
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	2 cut(s)	201, 403
Bme18I	GGWCC	1 cut(s)	810
BmgT120I	GGNCC	2 cut(s)	211, 810
BmrFI	CCNGG	2 cut(s)	201, 403
BmsI	GCATC	1 cut(s)	747
BpmI	CTGGAG	1 cut(s)	789
BpuMI	CCSGG	2 cut(s)	201, 403
BsaAI	YACGTR	2 cut(s)	283, 792
BsaJI	CCNNGG	2 cut(s)	181, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 762, 792
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	181, 360
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	38, 860
BseNI	ACTGG	1 cut(s)	598
BseSI	GKGCMC	1 cut(s)	646
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	2 cut(s)	120, 695
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	186, 212
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	193, 646
BsiSI	CCGG	3 cut(s)	200, 332, 402
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	186, 212
Bsp1286I	GDGCHC	2 cut(s)	193, 646
Bsp143I	GATC	3 cut(s)	225, 241, 721
Bsp19I	CCATGG	1 cut(s)	360
Bsp68I	TCGCGA	1 cut(s)	120
BspACI	CCGC	2 cut(s)	494, 695
BspANI	GGCC	2 cut(s)	186, 212
BspCNI	CTCAG	2 cut(s)	37, 859
BspFNI	CGCG	2 cut(s)	120, 695
BspMI	ACCTGC	2 cut(s)	299, 695
BspPI	GGATC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	2 cut(s)	181, 360
BssMI	GATC	3 cut(s)	225, 241, 721
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	116, 250, 747
Bst6I	CTCTTC	1 cut(s)	519
BstBAI	YACGTR	2 cut(s)	283, 792
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	24, 846
BstDSI	CCRYGG	2 cut(s)	181, 360
BstFNI	CGCG	2 cut(s)	120, 695
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	3 cut(s)	228, 244, 724
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	225, 241, 721
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 701
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	2 cut(s)	199, 401
BstSLI	GKGCMC	1 cut(s)	646
BstSNI	TACGTA	1 cut(s)	792
BstUI	CGCG	2 cut(s)	120, 695
BstV1I	GCAGC	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	186, 212
BtgI	CCRYGG	2 cut(s)	181, 360
BtsIMutI	CAGTG	1 cut(s)	246
BtuMI	TCGCGA	1 cut(s)	120
BveI	ACCTGC	2 cut(s)	299, 695
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	2 cut(s)	710, 813
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	2 cut(s)	211, 810
Csp6I	GTAC	4 cut(s)	280, 304, 406, 483
CviAII	CATG	5 cut(s)	30, 223, 361, 854, 860
CviJI	RGCY	6 cut(s)	8, 186, 191, 212, 767, 783
CviKI_1	RGCY	6 cut(s)	8, 186, 191, 212, 767, 783
CviQI	GTAC	4 cut(s)	280, 304, 406, 483
DdeI	CTNAG	2 cut(s)	24, 846
DpnI	GATC	3 cut(s)	227, 243, 723
DpnII	GATC	3 cut(s)	225, 241, 721
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	810
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	810
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	5 cut(s)	33, 226, 364, 857, 863
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FatI	CATG	5 cut(s)	29, 222, 360, 853, 859
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	2 cut(s)	6, 9
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	186, 212
HapII	CCGG	3 cut(s)	200, 332, 402
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	5 cut(s)	33, 226, 364, 857, 863
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	2 cut(s)	36, 139
HindII	GTYRAC	2 cut(s)	36, 139
HinfI	GANTC	3 cut(s)	42, 196, 771
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	200, 332, 402
HphI	GGTGA	3 cut(s)	5, 431, 469
Hpy166II	GTNNAC	3 cut(s)	36, 139, 644
Hpy188I	TCNGA	5 cut(s)	27, 195, 504, 717, 776
Hpy188III	TCNNGA	4 cut(s)	119, 274, 565, 668
Hpy8I	GTNNAC	3 cut(s)	36, 139, 644
HpyAV	CCTTC	2 cut(s)	61, 664
HpyCH4III	ACNGT	3 cut(s)	116, 250, 747
HpyCH4IV	ACGT	2 cut(s)	282, 791
HpyCH4V	TGCA	5 cut(s)	412, 644, 704, 760, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 701
HpyF3I	CTNAG	2 cut(s)	24, 846
HpySE526I	ACGT	2 cut(s)	282, 791
Hsp92II	CATG	5 cut(s)	33, 226, 364, 857, 863
HspAI	GCGC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	225, 241, 721
LmnI	GCTCC	2 cut(s)	182, 690
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	2 cut(s)	282, 791
MaeIII	GTNAC	2 cut(s)	256, 589
MalI	GATC	3 cut(s)	227, 243, 723
MboI	GATC	3 cut(s)	225, 241, 721
MboII	GAAGA	2 cut(s)	37, 536
MhlI	GDGCHC	2 cut(s)	193, 646
MluCI	AATT	8 cut(s)	142, 262, 388, 473, 546, 632, 676, 699
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	5 cut(s)	35, 269, 450, 732, 750
MslI	CAYNNNNRTG	2 cut(s)	584, 858
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	3 cut(s)	200, 332, 402
MspR9I	CCNGG	2 cut(s)	201, 403
Mva1269I	GAATGC	1 cut(s)	333
MvnI	CGCG	2 cut(s)	120, 695
MwoI	GCNNNNNNNGC	2 cut(s)	183, 701
NciI	CCSGG	2 cut(s)	201, 403
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	225, 241, 721
NlaIII	CATG	5 cut(s)	33, 226, 364, 857, 863
NmeAIII	GCCGAG	1 cut(s)	212
NruI	TCGCGA	1 cut(s)	120
NspI	RCATGY	1 cut(s)	863
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	42, 196
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Ppu21I	YACGTR	2 cut(s)	283, 792
PpuMI	RGGWCCY	1 cut(s)	810
Psp124BI	GAGCTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	810
PspPI	GGNCC	2 cut(s)	211, 810
PspPPI	RGGWCCY	1 cut(s)	810
PstNI	CAGNNNCTG	2 cut(s)	710, 813
PvuII	CAGCTG	1 cut(s)	8
RruI	TCGCGA	1 cut(s)	120
RsaI	GTAC	4 cut(s)	281, 305, 407, 484
RsaNI	GTAC	4 cut(s)	280, 304, 406, 483
RseI	CAYNNNNRTG	2 cut(s)	584, 858
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	5 cut(s)	35, 269, 450, 732, 750
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	225, 241, 721
Sau96I	GGNCC	2 cut(s)	211, 810
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	2 cut(s)	201, 403
SduI	GDGCHC	2 cut(s)	193, 646
SfaNI	GCATC	1 cut(s)	747
SinI	GGWCC	1 cut(s)	810
SmiMI	CAYNNNNRTG	2 cut(s)	584, 858
SnaBI	TACGTA	1 cut(s)	792
Sse9I	AATT	8 cut(s)	142, 262, 388, 473, 546, 632, 676, 699
SsiI	CCGC	2 cut(s)	494, 695
SspMI	CTAG	1 cut(s)	798
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	199, 401
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	116, 250, 747
TaiI	ACGT	2 cut(s)	285, 794
TaqI	TCGA	1 cut(s)	240
TasI	AATT	8 cut(s)	142, 262, 388, 473, 546, 632, 676, 699
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	42, 196
Tru1I	TTAA	5 cut(s)	35, 269, 450, 732, 750
Tru9I	TTAA	5 cut(s)	35, 269, 450, 732, 750
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	2 cut(s)	539, 842
TspGWI	ACGGA	3 cut(s)	353, 647, 887
TspRI	CASTG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	810
XapI	RAATTY	3 cut(s)	388, 473, 546
XceI	RCATGY	1 cut(s)	863
XspI	CTAG	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.