Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Forward (+)

73570536 .. 73573608

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG557300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGCTACTCCTCACCATCATCTCCTTCACACTTGCTTGACCAGACTCTTCTCCTTCCCTCTAAAACCTCTCTCCCCAAAACCCCAACCCCTATTTTTCACATTCTCTACTCTCACTCGCCCCAACCAAACAACACCCACCACAAATTTCAAAACTTTCTCCCAAATTTTCCAGCAATGCTCCCATGCCAGAGCTCTGAACCCGGGAAAACAGGCCCACGCCCGCATGCTCGTTTCCGGGTTCGAGCCCACAGTCTTCGTCACGAACTGTCTCATCCAAATGTATGTGAAATGCTGGGTCTTGGGTTATGCAGCCAAGGTGTTCGATGAAATGCCTCAACGGGACACGGTGTCGTGGAACACCATGATTTTCGGGTATGCTGAGAGTGGCGAAATGGGGTCTGCGCAGGCTTGTTTTGACGCCATGCCGGAGAGAGATGTGGTTTCTTGGAATTCGTTGATTTCGGGGTACTTGCAGAATGGGGAGTGTTTGAAGTCCATTGATGTTTATCTGAAGATGGGGAATGCAGGGGTGAGATGTGACCGTACTACATCTGCTGTTGTTCTGAAAGCGTGTGCGGTGATGGAAGAGGTTGAATTGGGGATTCAAATTCACTGTGTTGCGGTCAAAATGGCTTTCGACATTGATGTGTTCACGGGTAGTGCTTTAGCTGACATGTATGGCAAGTGTAAAAGATTGGATTGTTCGCTACAGGTTTTTCGTGAATTGCCTGAAAAGAATTCAGTCTCGTGGAGCGCTGTAATTGCAGGTTCGGTTCAGAATGACAGGTTTGCCATGGGTATAGAACTATTTAATGAGATGCAGAAAGCAGGCATTGGGGTGAGCCAATCTACCTATGCTAGTGTTTTCAGGTCGTGTGCAGGATTATCCGCATACAGCTTAGGCACTCAGTTACATGGGCATGCTGTAAAAACACAATTTCATTCTGATGTCGTAGTTGGCACCGCCACATTGGACATGTACGCAAAATGTGACAATGTAGGCGATGCCAGAAAGATATTTAACTCAATGCCAAACCGAAGTTTGCAGTCATATAATGCAATGATAGTTGGCTATGCTCGAAATGGGCAAGGTTTTGAAGCGCTGCAGCTGTTTATGCTTCTGCAGAAGTCTGGCATTGGTTTTGATGAAATAACATTGTCTGGTGCACTTAGTGCTTGTGCAATGATCAAAGGACACTTGGAGGGCCTTCAACTACAAGGATTAGTTGTTAAGAGTAGCTTCAGATCCAATGTATGTGTAACAAATGCCATTCTCGACATGTATGGTAAATGTGGAGATGTGTTGGGAGCTTCTTTTGTGTTTGATGAGATGGTAAGAAGAGATGCTGTGTCTTGGAATGCAATCATTGCAGCTCATGGACAGAACGAAAATAAAGAGGAAACACTTTCTTGTTTTGTCTCCATGCTCCGCTCAAGGATGGAACCTGACGAGTTCACCTATGGTAGCGTTTTAAGAGCTTGTGCAGGTCAGCATTCTTTAAACCATGGTATGGAAATCCATAGCAGAATAATTAAATCTGGAATGGGCATGAACTTGTTTATTGGAGGTGCCCTTGTTGATATGTACTCCAAGTGTGGAATGATGGAAGAGGCTGAAAAAATACATCACAGAACAGAACACACGATGGTGTCATGGAATGCAATCATATCTGGTTTCTCACTGCTGAAGCAAAATGAGGATGCACAGACATTTTTTTCTCAGATGTTGGAGATGGGAGAAAAGCCTGATAATTTCACATATGCAACGGTGCTTGATACCTGTGCTAATTTGGCTACTGTTGGACTTGGGAAGCAGATCCATGCTCAAATTATCAAGCATGAATTGCAATCGGATGTATATGTGACCAGCACTCTTGTTGATATGTACGCCAAGTGTGGTAACATGCAAGACTCTCATCTAATGTTCAAGAAAGCACCTAAGCGGGATGCTGTTACATGGAATGCCATGATTTCTGGCTATGCGAACTATGGTCTCGGAGAAGATGCCCTTAGAATTTTTGACAATATGCAGCTTGAGAATGTGGAGCCAAACCACGTAACTTTTGTTTCTGTCCTCCGAGCCTGTGGACATATTGGAAATGCTGAAAAAGGTTTATACTACTTCCGCACAATGCTTTCTGATTATGGTTTGAAACCTCAATTGGAGCATTACTCGTGTATGGTGGATATTATAGGAAGGTCAGGTCAAGTAGATCAAGCACTGAGGCTTATTCAAGATATGCCTTTTGAACCTGATGATGTAATATGGAGAACTCTGCTCAGCATTTGCAAGCTTCATGGGAATGTACAAGTGGCTGAAATAGCAGCCAACTCTATTTGGCAATTGGATCCGCAAGACTCTTCTACCTATGTTCTGTTGTCAAATATATATGCTGAAGCTGGAATGTGGGGTGAGGTCCTGGAGATGAGGAAAACAATGAGGTATAATAGGATGAAGAAGGAGCCGGGTTGCAGCTGGATTGAGGTAAAAGATGAAGTACATGCATTTTTTGTTGGGGACAAGGCTCATCCAAGAAGTGAGGAGGTATATGAGAGACTTGATTTGTTAGTTGTTGAGATGATGAGGATTGGGTATAGGCCAGAAATTGAGTTTGTGCTTGATGAGGAGATGGAAGAGCAGGAGCACCTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

885

Amino Acids

98.96

Weight (kDa)

5.76

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	145 - 193	9.2e-08	PPR repeat family
PPR_2	PF13041	246 - 294	2.1e-07	PPR repeat family
PPR	PF01535	351 - 380	3.4e-06	PPR repeat
PPR_2	PF13041	449 - 496	2.7e-09	PPR repeat family
PPR_2	PF13041	550 - 597	1.3e-09	PPR repeat family
PPR_3	PF13812	649 - 697	8.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	650 - 697	7.7e-13	PPR repeat family
PPR	PF01535	652 - 681	6.2e-07	PPR repeat
E_motif	PF20431	767 - 829	2.2e-21	E motif
Eplus_motif	PF20430	834 - 858	2.8e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	2 cut(s)	758, 1478
AccB1I	GGYRCC	2 cut(s)	962, 1571
AccB7I	CCANNNNNTGG	1 cut(s)	1513
AccBSI	CCGCTC	1 cut(s)	1434
AciI	CCGC	9 cut(s)	223, 578, 623, 891, 966, 1432, 1945, 2128, 2354
AclWI	GGATC	4 cut(s)	1242, 1813, 2345, 2358
AcsI	RAATTY	6 cut(s)	145, 165, 451, 609, 739, 2016
AcuI	CTGAAG	4 cut(s)	533, 1228, 1709, 2418
AcyI	GRCGYC	1 cut(s)	420
AdeI	CACNNNGTG	1 cut(s)	1175
AfaI	GTAC	7 cut(s)	470, 547, 983, 1589, 1889, 2310, 2502
AfeI	AGCGCT	2 cut(s)	757, 1104
AfiI	CCNNNNNNNGG	1 cut(s)	1513
AflIII	ACRYGT	3 cut(s)	675, 978, 1281
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	2421
AjuI	GAANNNNNNNTTGG	2 cut(s)	2147, 2179
AleI	CACNNNNGTG	1 cut(s)	1649
Alw21I	GWGCWC	3 cut(s)	196, 1171, 2649
Alw26I	GTCTC	5 cut(s)	275, 751, 1426, 2000, 2551
Alw44I	GTGCAC	1 cut(s)	1167
AlwI	GGATC	4 cut(s)	1242, 1813, 2345, 2358
Ama87I	CYCGRG	1 cut(s)	202
Aor51HI	AGCGCT	2 cut(s)	757, 1104
AoxI	GGCC	3 cut(s)	213, 1207, 2600
ApaLI	GTGCAC	1 cut(s)	1167
ApeKI	GCWGC	7 cut(s)	311, 1105, 1108, 1373, 2032, 2327, 2475
ApoI	RAATTY	6 cut(s)	145, 165, 451, 609, 739, 2016
AspLEI	GCGC	3 cut(s)	406, 758, 1105
AspS9I	GGNCC	3 cut(s)	214, 1207, 2419
AsuC2I	CCSGG	4 cut(s)	203, 204, 238, 2469
AsuHPI	GGTGA	6 cut(s)	5, 544, 592, 853, 1450, 2426
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	2419
BaeGI	GKGCMC	2 cut(s)	1171, 1576
BamHI	GGATCC	1 cut(s)	2350
BanI	GGYRCC	2 cut(s)	962, 1571
BanII	GRGCYC	2 cut(s)	196, 249
BauI	CACGAG	2 cut(s)	748, 2176
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	3 cut(s)	196, 1171, 2649
BbvI	GCAGC	7 cut(s)	323, 1092, 1120, 1385, 2044, 2339, 2487
BccI	CCATC	9 cut(s)	24, 511, 577, 1327, 1435, 1600, 1642, 1729, 2626
BciT130I	CCWGG	1 cut(s)	2423
BclI	TGATCA	1 cut(s)	1188
BcnI	CCSGG	4 cut(s)	203, 204, 238, 2469
BcoDI	GTCTC	5 cut(s)	275, 751, 1426, 2000, 2551
BfaI	CTAG	2 cut(s)	861, 2651
BfmI	CTRYAG	3 cut(s)	710, 1106, 1124
BfoI	RGCGCY	2 cut(s)	759, 1106
BfuAI	ACCTGC	2 cut(s)	758, 1478
BisI	GCNGC	7 cut(s)	312, 1106, 1109, 1374, 2033, 2328, 2476
BlpI	GCTNAGC	1 cut(s)	2282
BlsI	GCNGC	7 cut(s)	313, 1107, 1110, 1375, 2034, 2329, 2477
Bme1390I	CCNGG	5 cut(s)	203, 204, 238, 2423, 2469
Bme18I	GGWCC	1 cut(s)	2419
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	214, 1207, 2419
BmiI	GGNNCC	6 cut(s)	964, 1446, 1573, 2049, 2352, 2466
BmrFI	CCNGG	5 cut(s)	203, 204, 238, 2423, 2469
BmsI	GCATC	6 cut(s)	810, 997, 1336, 1693, 1939, 1996
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	2159, 2191
BpmI	CTGGAG	1 cut(s)	2444
Bpu10I	CCTNAGC	2 cut(s)	901, 1941
Bpu1102I	GCTNAGC	1 cut(s)	2282
BpuEI	CTTGAG	2 cut(s)	1420, 2057
BpuMI	CCSGG	4 cut(s)	203, 204, 238, 2469
BsaAI	YACGTR	1 cut(s)	2059
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	2000
BsaJI	CCNNGG	4 cut(s)	202, 315, 795, 1507
Bsc4I	CCNNNNNNNGG	1 cut(s)	1513
Bse3DI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	2423
BseDI	CCNNGG	4 cut(s)	202, 315, 795, 1507
BseGI	GGATG	7 cut(s)	273, 1446, 1708, 1861, 1954, 2460, 2530
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	1513
BseMI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
BseMII	CTCAG	5 cut(s)	372, 923, 1736, 2216, 2296
BseRI	GAGGAG	2 cut(s)	2558, 2642
BseSI	GKGCMC	2 cut(s)	1171, 1576
BseXI	GCAGC	7 cut(s)	323, 1092, 1120, 1385, 2044, 2339, 2487
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	2 cut(s)	900, 1506
BshFI	GGCC	3 cut(s)	215, 1209, 2602
BshNI	GGYRCC	2 cut(s)	962, 1571
BsiHKAI	GWGCWC	3 cut(s)	196, 1171, 2649
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	203, 237, 428, 2468
BslFI	GGGAC	2 cut(s)	356, 2534
BslI	CCNNNNNNNGG	1 cut(s)	1513
BsmAI	GTCTC	5 cut(s)	275, 751, 1426, 2000, 2551
BsmFI	GGGAC	2 cut(s)	356, 2534
BsmI	GAATGC	5 cut(s)	529, 1366, 1495, 1666, 1969
BsnI	GGCC	3 cut(s)	215, 1209, 2602
Bso31I	GGTCTC	1 cut(s)	2000
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2649
Bsp1407I	TGTACA	1 cut(s)	2308
Bsp143I	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
Bsp1720I	GCTNAGC	1 cut(s)	2282
Bsp19I	CCATGG	2 cut(s)	795, 1507
BspACI	CCGC	9 cut(s)	223, 578, 623, 891, 966, 1432, 1945, 2128, 2354
BspANI	GGCC	3 cut(s)	215, 1209, 2602
BspCNI	CTCAG	5 cut(s)	373, 922, 1735, 2217, 2295
BspLI	GGNNCC	6 cut(s)	964, 1446, 1573, 2049, 2352, 2466
BspMAI	CTGCAG	2 cut(s)	1110, 1128
BspMI	ACCTGC	2 cut(s)	758, 1478
BspPI	GGATC	4 cut(s)	1242, 1813, 2345, 2358
BspQI	GCTCTTC	1 cut(s)	2631
BspT107I	GGYRCC	2 cut(s)	962, 1571
BspTNI	GGTCTC	1 cut(s)	2000
BsrBI	CCGCTC	1 cut(s)	1434
BsrDI	GCAATG	4 cut(s)	182, 1068, 1191, 1368
BsrGI	TGTACA	1 cut(s)	2308
BssECI	CCNNGG	4 cut(s)	202, 315, 795, 1507
BssMI	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
BssNI	GRCGYC	1 cut(s)	420
BssSI	CACGAG	2 cut(s)	748, 2176
BssT1I	CCWWGG	3 cut(s)	315, 795, 1507
Bst2BI	CACGAG	2 cut(s)	748, 2176
Bst2UI	CCWGG	1 cut(s)	2423
Bst4CI	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
Bst6I	CTCTTC	6 cut(s)	53, 582, 1336, 1605, 2368, 2631
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	3 cut(s)	1175, 1370, 1846
BstAUI	TGTACA	1 cut(s)	2308
BstBAI	YACGTR	1 cut(s)	2059
BstC8I	GCNNGC	6 cut(s)	223, 227, 408, 832, 924, 2294
BstDEI	CTNAG	9 cut(s)	381, 901, 909, 1172, 1722, 1941, 2012, 2225, 2282
BstDSI	CCRYGG	2 cut(s)	795, 1507
BstF5I	GGATG	7 cut(s)	273, 1446, 1708, 1861, 1954, 2460, 2530
BstH2I	RGCGCY	2 cut(s)	759, 1106
BstHHI	GCGC	3 cut(s)	406, 758, 1105
BstKTI	GATC	5 cut(s)	1191, 1250, 1821, 2218, 2353
BstMAI	GTCTC	5 cut(s)	275, 751, 1426, 2000, 2551
BstMBI	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
BstMWI	GCNNNNNNNGC	7 cut(s)	764, 1117, 1175, 1370, 1793, 1846, 2324
BstNI	CCWGG	1 cut(s)	2423
BstNSI	RCATGY	7 cut(s)	229, 679, 926, 982, 1285, 1909, 2507
BstSCI	CCNGG	5 cut(s)	201, 202, 236, 2421, 2467
BstSFI	CTRYAG	3 cut(s)	710, 1106, 1124
BstSLI	GKGCMC	2 cut(s)	1171, 1576
BstV1I	GCAGC	7 cut(s)	323, 1092, 1120, 1385, 2044, 2339, 2487
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	3 cut(s)	1247, 1818, 2350
BstYI	RGATCY	3 cut(s)	1247, 1818, 2350
BsuRI	GGCC	3 cut(s)	215, 1209, 2602
BtgI	CCRYGG	2 cut(s)	795, 1507
BtgZI	GCGATG	1 cut(s)	1020
BtsCI	GGATG	7 cut(s)	273, 1446, 1708, 1861, 1954, 2460, 2530
BtsI	GCAGTG	1 cut(s)	1682
BtsIMutI	CAGTG	3 cut(s)	613, 1682, 2222
BveI	ACCTGC	2 cut(s)	758, 1478
Cac8I	GCNNGC	6 cut(s)	223, 227, 408, 832, 924, 2294
CfoI	GCGC	3 cut(s)	406, 758, 1105
Cfr13I	GGNCC	3 cut(s)	214, 1207, 2419
Cfr9I	CCCGGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	7 cut(s)	469, 546, 982, 1588, 1888, 2309, 2501
CviQI	GTAC	7 cut(s)	469, 546, 982, 1588, 1888, 2309, 2501
DdeI	CTNAG	9 cut(s)	381, 901, 909, 1172, 1722, 1941, 2012, 2225, 2282
DpnI	GATC	5 cut(s)	1190, 1249, 1820, 2217, 2352
DpnII	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
DraI	TTTAAA	1 cut(s)	1503
DraIII	CACNNNGTG	1 cut(s)	1175
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	6 cut(s)	53, 582, 1336, 1605, 2368, 2631
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	6 cut(s)	53, 582, 1336, 1605, 2368, 2631
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	315, 795, 1507
Eco24I	GRGCYC	2 cut(s)	196, 249
Eco31I	GGTCTC	1 cut(s)	2000
Eco47I	GGWCC	1 cut(s)	2419
Eco47III	AGCGCT	2 cut(s)	757, 1104
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	4 cut(s)	533, 1228, 1709, 2418
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	2 cut(s)	1207, 2419
EcoRI	GAATTC	2 cut(s)	451, 739
EcoRII	CCWGG	1 cut(s)	2421
EcoT14I	CCWWGG	3 cut(s)	315, 795, 1507
EcoT22I	ATGCAT	1 cut(s)	2509
EcoT38I	GRGCYC	2 cut(s)	196, 249
ErhI	CCWWGG	3 cut(s)	315, 795, 1507
FalI	AAGNNNNNCTT	4 cut(s)	1226, 1258, 1995, 2027
FaqI	GGGAC	2 cut(s)	356, 2534
FauI	CCCGC	2 cut(s)	230, 1938
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	1 cut(s)	1188
Fnu4HI	GCNGC	7 cut(s)	312, 1106, 1109, 1374, 2033, 2328, 2476
FokI	GGATG	7 cut(s)	260, 1453, 1715, 1868, 1961, 2467, 2517
FriOI	GRGCYC	2 cut(s)	196, 249
Fsp4HI	GCNGC	7 cut(s)	312, 1106, 1109, 1374, 2033, 2328, 2476
FspBI	CTAG	2 cut(s)	861, 2651
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	3 cut(s)	405, 757, 1104
GluI	GCNGC	7 cut(s)	312, 1106, 1109, 1374, 2033, 2328, 2476
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	2444
HaeII	RGCGCY	2 cut(s)	759, 1106
HaeIII	GGCC	3 cut(s)	215, 1209, 2602
HapII	CCGG	4 cut(s)	203, 237, 428, 2468
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	3 cut(s)	406, 758, 1105
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	3 cut(s)	404, 756, 1103
HinP1I	GCGC	3 cut(s)	404, 756, 1103
HindIII	AAGCTT	1 cut(s)	2294
HinfI	GANTC	4 cut(s)	45, 604, 1913, 2360
HpaII	CCGG	4 cut(s)	203, 237, 428, 2468
HphI	GGTGA	6 cut(s)	5, 544, 592, 853, 1450, 2426
Hpy166II	GTNNAC	4 cut(s)	654, 1169, 1458, 2090
Hpy188III	TCNNGA	6 cut(s)	262, 722, 1277, 1542, 1930, 2237
Hpy8I	GTNNAC	4 cut(s)	654, 1169, 1458, 2090
HpyAV	CCTTC	5 cut(s)	35, 64, 1220, 2193, 2455
HpyCH4III	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
HpyCH4IV	ACGT	1 cut(s)	2058
HpyF10VI	GCNNNNNNNGC	7 cut(s)	764, 1117, 1175, 1370, 1793, 1846, 2324
HpyF3I	CTNAG	9 cut(s)	381, 901, 909, 1172, 1722, 1941, 2012, 2225, 2282
HpySE526I	ACGT	1 cut(s)	2058
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	3 cut(s)	404, 756, 1103
Ksp22I	TGATCA	1 cut(s)	1188
Kzo9I	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
LguI	GCTCTTC	1 cut(s)	2631
LmnI	GCTCC	8 cut(s)	185, 753, 1310, 1434, 2047, 2167, 2464, 2644
Lsp1109I	GCAGC	7 cut(s)	323, 1092, 1120, 1385, 2044, 2339, 2487
LweI	GCATC	6 cut(s)	810, 997, 1336, 1693, 1939, 1996
MaeI	CTAG	2 cut(s)	861, 2651
MaeII	ACGT	1 cut(s)	2058
MaeIII	GTNAC	9 cut(s)	259, 539, 912, 992, 1261, 1864, 1901, 1954, 2059
MalI	GATC	5 cut(s)	1190, 1249, 1820, 2217, 2352
MbiI	CCGCTC	1 cut(s)	1434
MboI	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
MfeI	CAATTG	2 cut(s)	2162, 2345
MflI	RGATCY	3 cut(s)	1247, 1818, 2350
MhlI	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2649
MlyI	GAGTC	3 cut(s)	39, 1907, 2354
MmeI	TCCRAC	2 cut(s)	1710, 1783
Mph1103I	ATGCAT	1 cut(s)	2509
MseI	TTAA	6 cut(s)	813, 1023, 1233, 1475, 1502, 1536
MslI	CAYNNNNRTG	7 cut(s)	278, 647, 839, 921, 948, 1649, 2304
MspA1I	CMGCKG	2 cut(s)	1111, 2478
MspI	CCGG	4 cut(s)	203, 237, 428, 2468
MspR9I	CCNGG	5 cut(s)	203, 204, 238, 2423, 2469
MunI	CAATTG	2 cut(s)	2162, 2345
Mva1269I	GAATGC	5 cut(s)	529, 1366, 1495, 1666, 1969
MvaI	CCWGG	1 cut(s)	2423
MwoI	GCNNNNNNNGC	7 cut(s)	764, 1117, 1175, 1370, 1793, 1846, 2324
NciI	CCSGG	4 cut(s)	203, 204, 238, 2469
NcoI	CCATGG	2 cut(s)	795, 1507
NdeI	CATATG	1 cut(s)	1762
NdeII	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
NlaIV	GGNNCC	6 cut(s)	964, 1446, 1573, 2049, 2352, 2466
NmuCI	GTSAC	4 cut(s)	259, 539, 992, 1864
NsbI	TGCGCA	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	2509
NspI	RCATGY	7 cut(s)	229, 679, 926, 982, 1285, 1909, 2507
OliI	CACNNNNGTG	1 cut(s)	1649
PaeI	GCATGC	2 cut(s)	229, 926
PciI	ACATGT	3 cut(s)	675, 978, 1281
PciSI	GCTCTTC	1 cut(s)	2631
PctI	GAATGC	5 cut(s)	529, 1366, 1495, 1666, 1969
PfeI	GAWTC	1 cut(s)	604
PflMI	CCANNNNNTGG	1 cut(s)	1513
PfoI	TCCNGGA	1 cut(s)	2421
PkrI	GCNGC	7 cut(s)	313, 1107, 1110, 1375, 2034, 2329, 2477
PleI	GAGTC	3 cut(s)	39, 1907, 2354
PpsI	GAGTC	3 cut(s)	39, 1907, 2354
Ppu21I	YACGTR	1 cut(s)	2059
PpuMI	RGGWCCY	1 cut(s)	2419
PscI	ACATGT	3 cut(s)	675, 978, 1281
Psp124BI	GAGCTC	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	2419
Psp6I	CCWGG	1 cut(s)	2421
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	2421
PspN4I	GGNNCC	6 cut(s)	964, 1446, 1573, 2049, 2352, 2466
PspPI	GGNCC	3 cut(s)	214, 1207, 2419
PspPPI	RGGWCCY	1 cut(s)	2419
PstI	CTGCAG	2 cut(s)	1110, 1128
PsuI	RGATCY	3 cut(s)	1247, 1818, 2350
PvuII	CAGCTG	2 cut(s)	1111, 2478
RsaI	GTAC	7 cut(s)	470, 547, 983, 1589, 1889, 2310, 2502
RsaNI	GTAC	7 cut(s)	469, 546, 982, 1588, 1888, 2309, 2501
RseI	CAYNNNNRTG	7 cut(s)	278, 647, 839, 921, 948, 1649, 2304
SacI	GAGCTC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	2631
SaqAI	TTAA	6 cut(s)	813, 1023, 1233, 1475, 1502, 1536
SatI	GCNGC	7 cut(s)	312, 1106, 1109, 1374, 2033, 2328, 2476
Sau3AI	GATC	5 cut(s)	1188, 1247, 1818, 2215, 2350
Sau96I	GGNCC	3 cut(s)	214, 1207, 2419
SchI	GAGTC	3 cut(s)	39, 1907, 2354
ScrFI	CCNGG	5 cut(s)	203, 204, 238, 2423, 2469
SduI	GDGCHC	5 cut(s)	196, 249, 1171, 1576, 2649
SfaNI	GCATC	6 cut(s)	810, 997, 1336, 1693, 1939, 1996
SfcI	CTRYAG	3 cut(s)	710, 1106, 1124
SinI	GGWCC	1 cut(s)	2419
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	7 cut(s)	278, 647, 839, 921, 948, 1649, 2304
SmlI	CTYRAG	2 cut(s)	1435, 2036
SmoI	CTYRAG	2 cut(s)	1435, 2036
SphI	GCATGC	2 cut(s)	229, 926
SsiI	CCGC	9 cut(s)	223, 578, 623, 891, 966, 1432, 1945, 2128, 2354
SspMI	CTAG	2 cut(s)	861, 2651
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	5 cut(s)	201, 202, 236, 2421, 2467
StyI	CCWWGG	3 cut(s)	315, 795, 1507
TaaI	ACNGT	7 cut(s)	253, 269, 349, 545, 617, 1771, 1801
TaiI	ACGT	1 cut(s)	2061
TaqI	TCGA	5 cut(s)	243, 324, 639, 1081, 1278
TatI	WGTACW	3 cut(s)	1587, 2308, 2500
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	6 cut(s)	813, 1023, 1233, 1475, 1502, 1536
Tru9I	TTAA	6 cut(s)	813, 1023, 1233, 1475, 1502, 1536
TscAI	CASTG	3 cut(s)	620, 1689, 2229
TseFI	GTSAC	4 cut(s)	259, 539, 992, 1864
TseI	GCWGC	7 cut(s)	311, 1105, 1108, 1373, 2032, 2327, 2475
Tsp45I	GTSAC	4 cut(s)	259, 539, 992, 1864
TspDTI	ATGAA	8 cut(s)	342, 932, 1164, 1568, 1857, 2288, 2471, 2511
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	3 cut(s)	620, 1689, 2229
Van91I	CCANNNNNTGG	1 cut(s)	1513
VneI	GTGCAC	1 cut(s)	1167
VpaK11BI	GGWCC	1 cut(s)	2419
XapI	RAATTY	6 cut(s)	145, 165, 451, 609, 739, 2016
XceI	RCATGY	7 cut(s)	229, 679, 926, 982, 1285, 1909, 2507
XmaI	CCCGGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	861, 2651
Zsp2I	ATGCAT	1 cut(s)	2509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.