Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Reverse (-)

5504865 .. 5507543

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1068000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGGCTGCTGCTCACCATCTCTCTCCGGTTTGGTTAACCAGAATCGTCTCCTTCTCTTCCAAATCTCTTCACCCCCAAACGCAACCCATTTGCTCTCTCTCCACTCTCACTCACAGTCGCAACCAACCAATACCCGCAAAAAATTTCAAAACTTTCTCCCACATTTTCCAGCAATGCTCCCACGGCCGAGCTCTGAATCCGGGAAAACAGGCCCACGCTCGCATGATCGTTTCTGGGTTCGATCCCACTGTGTTCGTTACGAATTGTTTGATCCAGATGTATGTGAAGTGTGGGGTTTTGCAGTATGCAGGTAAGGTGTTCGATGGAATGCCGCAGAGGGATATGGTGTCGTGGAACACCATGGTTTTTGGGTATGCTCGGAGTGGGAAGATGGGGTTTGCGCAGTCTTGTTTTGATGCTATGCCTGAGAAAGACGTGGTTTCATGGAATTCTTTGATTTCGGGGTATTTGCAGAGTGGTGAGTATTGGAAGTCTACTGAAGTTTATGTGGAAATGGTGAGTGGGGGTATGGAATTCGACTGCACAACGACTGCGGTTGTTCTGAAGGCGTGTTCTGTTATGGAAGAGATTGGTTTGGGGATTCAAATTCATTGTGTTTCAGTGAAGATGGGTTTTGACATTGATGTGGTCACCGGAAGTGCTTTGGTGGATATGTATGGGAAGTGTAAGCGATTAGATTGTTCGCTTCAAGCCTTCCATGAATTGCCCGAAAAGAATTGGGTTTCTTGGAGCGCAATAATTGCAGGTTCTGTTCAGAATGATCGGTACGTCAAGGGTTTAGAACTGTTTAATGAGATGCAGAAAGCGGGAGCCGGGGTGAGCCAGTCTACATATGCTAGCGTCTTCAGGTCCTGTGCAGGATTATCTGCATATAGATTAGGCACTCAGTTTCATGGACATGCTATAAAGACGGACTTCCAATTTGATGTCATCGTTGGAACTGCCACATTGGACATGTATTCAAAATGTAACAGGATGTCTGATGCTAGAAAGATATTCGATTTGATGGCGAACCGGAGTTTGCAGTCATATAATGCAATGATTGTAGGATATGCTCGAAATGAGAAAGGTTTTGAAGCTCTGCGGCTATTTAAGCTTTTGCGGAAATCTGGTCTTGGTTTTGATGAGATAACATTATCTGGTGCACTTAGCGCTTGTGCTGTGATCAAGGGGCTCTTGGAGGGGATTCAACTACAATTATTAGTGGTTAAGAGTAGTTTGAGATCAAATGTATGTGTAGCAAATGCCATGCTGGACATGTACGGTAAATGCGGAGATCTCTTTGGAGCTTCTCGCGTGTTTGATGAGATGGTAGTTAGAGATGCTGTGTCTTGGAATGCGATTATTGCAGCTTATGGACAAAATGAAAATGAAAAGGAGACACTTTCATTTTTCGTGTCCATGCTCCGCTCAAGTATGGAACCGGATGAGTTCACCTTTGGTAGTGTTCTAAAAGCTTGTGCAGGTCAGCACTCTTTAAACTATGGGATGGAAATTCATAGCAGAATTATTAAATCTGGAATGGGCATGAACTTATTTATTGGAGGTGCCCTTGTCGATATGTATTGCAAGTGTGGAATGATGGAAGAGGCAGAAAAGATACATGATAGAACTGAAGAACAAACCATGGTTTCATGGAATGCAATCATATCTGGCTTCTCATTGCATAAGCAAGATGAGGAAGCGCAGAGATTTTTCTCTTTGATGTTGGAAATGGGTGCAGAACCTGATAACTTTACATACGCTACGGTTCTTGATACCTGTGCCAATTTGGCTACTGTTGGACTTGGGAAGCAGATCCATGCTCAGATTATCAAACATGAATTGCAGTCGGATGTATACATAGTCAGCACTCTTGTCGATATGTACTCAAAATGTGGTAACATGCAAGATTCACATCTAATGTTCAAGAAAGCACCTAAGCGGGATGCTGTCACATGGAACGCTATGATCTCTGGCTACGCAAACTTCGGCCTTGGAGAAGATGCTCTTAGAATTTTTGAGTACATGCAGCTTGAGAATGTGGAGCCAAATCATGCAACTTTTGTTTCAGTCCTCCGAGCCTGTGGACATATTGGGCACGCTGAAAAAGGTTTACACTATTTCCGCGCAATGCTTAGCGACTATGGTTTACATCCTCAGTTGGAGCATTACTCATGTATGGTGGATATTATAGGGAGGTCAGGCCAAGTCCACGAGGCCTTGAGGCTTATTGACAACATGCCTTTCGAAGCCGACGATGTTATATGGAGAACTCTGCTGAGCATTTGCAAGCTCCATGGAAATGTAGAGGTGGCAGAAAAAGCAGCCAGCTCCATTTTGCAACTGGATCCTCAAGATTCTTCTACCTATGTTCTGTTATCAAATATATATGCGGAAGCTGGAATGTGGGGCAAGGTCTCGAAGATGAGGAAGACAATGTGGCACGGTAAATTAAAGAAGGAGCCGGGTTGCAGCTGGATTGAGGTAAAAGATGAGGTACATGCGTTTTTGGTTGGCGACAAGGCTCATCCGAGACATGAAGAGGTGTATGAGCAGCTTGATTTGCTTGTTTCCGAGATGACGAGAGTTGGGTATAGGCCAGAAATTGATTTTGTGCTTGATGAGGAGATGGGAAAGCAGGAGTTTCTTGAAGATGAGCTCAAATTTAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

893

Amino Acids

99.66

Weight (kDa)

5.98

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	144 - 191	2e-07	PPR repeat family
PPR_2	PF13041	246 - 293	5.2e-06	PPR repeat family
PPR_2	PF13041	448 - 495	5.7e-09	PPR repeat family
PPR_2	PF13041	550 - 597	1.3e-09	PPR repeat family
PPR_3	PF13812	649 - 697	1.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	650 - 697	5.1e-12	PPR repeat family
PPR	PF01535	652 - 681	4.3e-07	PPR repeat
E_motif	PF20431	767 - 829	7.1e-22	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
Acc36I	ACCTGC	3 cut(s)	299, 755, 1475
AccB1I	GGYRCC	1 cut(s)	1568
AccBSI	CCGCTC	1 cut(s)	1431
AccI	GTMKAC	3 cut(s)	494, 848, 1860
AccII	CGCG	2 cut(s)	1317, 2130
AclWI	GGATC	5 cut(s)	236, 265, 1813, 2345, 2358
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	7 cut(s)	142, 448, 533, 606, 1515, 2016, 2666
AcuI	CTGAAG	4 cut(s)	519, 584, 850, 1656
AfaI	GTAC	5 cut(s)	788, 1283, 1889, 2027, 2502
AfeI	AGCGCT	1 cut(s)	1174
AflIII	ACRYGT	2 cut(s)	975, 1278
AgsI	TTSAA	8 cut(s)	148, 605, 710, 984, 1097, 1211, 1930, 2654
AjiI	CACGTC	1 cut(s)	436
Alw21I	GWGCWC	3 cut(s)	193, 1168, 2664
Alw26I	GTCTC	4 cut(s)	52, 1394, 2425, 2530
Alw44I	GTGCAC	1 cut(s)	1164
AlwI	GGATC	5 cut(s)	236, 265, 1813, 2345, 2358
AlwNI	CAGNNNCTG	3 cut(s)	770, 873, 1748
Aor51HI	AGCGCT	1 cut(s)	1174
AoxI	GGCC	6 cut(s)	184, 210, 1993, 2206, 2220, 2600
ApaLI	GTGCAC	1 cut(s)	1164
ApeKI	GCWGC	7 cut(s)	5, 8, 1370, 2032, 2327, 2475, 2557
ApoI	RAATTY	7 cut(s)	142, 448, 533, 606, 1515, 2016, 2666
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AspLEI	GCGC	5 cut(s)	403, 755, 1175, 1708, 2132
AspS9I	GGNCC	2 cut(s)	211, 870
AsuC2I	CCSGG	3 cut(s)	201, 835, 2469
AsuHPI	GGTGA	7 cut(s)	5, 62, 491, 529, 643, 850, 1447
AsuII	TTCGAA	1 cut(s)	2250
AsuNHI	GCTAGC	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	870
BaeGI	GKGCMC	3 cut(s)	1168, 1573, 2103
BaeI	ACNNNNGTAYC	2 cut(s)	2492, 2525
BamHI	GGATCC	1 cut(s)	2350
BanI	GGYRCC	1 cut(s)	1568
BanII	GRGCYC	3 cut(s)	193, 1197, 2664
BauI	CACGAG	1 cut(s)	2216
BbsI	GAAGAC	2 cut(s)	856, 2441
Bbv12I	GWGCWC	3 cut(s)	193, 1168, 2664
BbvI	GCAGC	5 cut(s)	1382, 2044, 2339, 2487, 2569
BccI	CCATC	9 cut(s)	24, 317, 385, 622, 1021, 1324, 1504, 1597, 2626
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	1861, 1895
BclI	TGATCA	1 cut(s)	1185
BcnI	CCSGG	3 cut(s)	201, 835, 2469
BcoDI	GTCTC	4 cut(s)	52, 1394, 2425, 2530
BfaI	CTAG	2 cut(s)	858, 1008
BfoI	RGCGCY	1 cut(s)	1176
BfuAI	ACCTGC	3 cut(s)	299, 755, 1475
BglI	GCCNNNNNGGC	1 cut(s)	1793
BglII	AGATCT	1 cut(s)	1297
BisI	GCNGC	9 cut(s)	6, 9, 332, 1106, 1371, 2033, 2328, 2476, 2558
BlpI	GCTNAGC	2 cut(s)	2138, 2282
BlsI	GCNGC	9 cut(s)	7, 10, 333, 1107, 1372, 2034, 2329, 2477, 2559
Bme1390I	CCNGG	3 cut(s)	201, 835, 2469
Bme18I	GGWCC	1 cut(s)	870
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	211, 870
BmiI	GGNNCC	6 cut(s)	832, 1443, 1570, 2049, 2352, 2466
BmrFI	CCNGG	3 cut(s)	201, 835, 2469
BmsI	GCATC	6 cut(s)	406, 807, 994, 1333, 1939, 1996
BmtI	GCTAGC	1 cut(s)	861
BpiI	GAAGAC	2 cut(s)	856, 2441
BplI	GAGNNNNNCTC	2 cut(s)	2159, 2191
Bpu10I	CCTNAGC	1 cut(s)	1941
Bpu1102I	GCTNAGC	2 cut(s)	2138, 2282
Bpu14I	TTCGAA	1 cut(s)	2250
BpuEI	CTTGAG	4 cut(s)	1417, 2057, 2245, 2340
BpuMI	CCSGG	3 cut(s)	201, 835, 2469
BsaBI	GATNNNNATC	1 cut(s)	1917
BsaI	GGTCTC	1 cut(s)	2425
BsaJI	CCNNGG	6 cut(s)	181, 360, 834, 1647, 1996, 2299
BsaWI	WCCGGW	4 cut(s)	25, 653, 1035, 1444
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bse1I	ACTGG	2 cut(s)	844, 2352
Bse3DI	GCAATG	4 cut(s)	179, 1065, 1682, 2139
Bse8I	GATNNNNATC	1 cut(s)	1917
BseDI	CCNNGG	6 cut(s)	181, 360, 834, 1647, 1996, 2299
BseGI	GGATG	7 cut(s)	1002, 1453, 1515, 1861, 1954, 2155, 2530
BseJI	GATNNNNATC	1 cut(s)	1917
BseMI	GCAATG	4 cut(s)	179, 1065, 1682, 2139
BseMII	CTCAG	5 cut(s)	417, 920, 1841, 2174, 2273
BseNI	ACTGG	2 cut(s)	844, 2352
BseRI	GAGGAG	1 cut(s)	2642
BseSI	GKGCMC	3 cut(s)	1168, 1573, 2103
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	1382, 2044, 2339, 2487, 2569
BsgI	GTGCAG	4 cut(s)	526, 897, 1503, 1761
Bsh1236I	CGCG	2 cut(s)	1317, 2130
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	186, 212, 1995, 2208, 2222, 2602
BshNI	GGYRCC	1 cut(s)	1568
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	3 cut(s)	193, 1168, 2664
BsiSI	CCGG	7 cut(s)	26, 200, 654, 834, 1036, 1445, 2468
BsmAI	GTCTC	4 cut(s)	52, 1394, 2425, 2530
BsmBI	CGTCTC	1 cut(s)	52
BsmI	GAATGC	3 cut(s)	333, 1363, 1666
BsnI	GGCC	6 cut(s)	186, 212, 1995, 2208, 2222, 2602
Bso31I	GGTCTC	1 cut(s)	2425
Bsp119I	TTCGAA	1 cut(s)	2250
Bsp1286I	GDGCHC	6 cut(s)	193, 1168, 1197, 1573, 2103, 2664
Bsp1720I	GCTNAGC	2 cut(s)	2138, 2282
Bsp19I	CCATGG	3 cut(s)	360, 1647, 2299
BspANI	GGCC	6 cut(s)	186, 212, 1995, 2208, 2222, 2602
BspCNI	CTCAG	5 cut(s)	418, 919, 1840, 2173, 2274
BspFNI	CGCG	2 cut(s)	1317, 2130
BspLI	GGNNCC	6 cut(s)	832, 1443, 1570, 2049, 2352, 2466
BspMI	ACCTGC	3 cut(s)	299, 755, 1475
BspOI	GCTAGC	1 cut(s)	861
BspPI	GGATC	5 cut(s)	236, 265, 1813, 2345, 2358
BspT104I	TTCGAA	1 cut(s)	2250
BspT107I	GGYRCC	1 cut(s)	1568
BspTNI	GGTCTC	1 cut(s)	2425
BsrBI	CCGCTC	1 cut(s)	1431
BsrDI	GCAATG	4 cut(s)	179, 1065, 1682, 2139
BsrI	ACTGG	2 cut(s)	844, 2352
BssECI	CCNNGG	6 cut(s)	181, 360, 834, 1647, 1996, 2299
BssNAI	GTATAC	1 cut(s)	1861
BssSI	CACGAG	1 cut(s)	2216
BssT1I	CCWWGG	4 cut(s)	360, 1647, 1996, 2299
Bst1107I	GTATAC	1 cut(s)	1861
Bst2BI	CACGAG	1 cut(s)	2216
Bst4CI	ACNGT	7 cut(s)	116, 250, 807, 1286, 1771, 1801, 2450
Bst6I	CTCTTC	5 cut(s)	61, 72, 579, 1602, 2538
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	2250
BstC8I	GCNNGC	5 cut(s)	220, 859, 2103, 2294, 2332
BstDEI	CTNAG	9 cut(s)	426, 906, 1169, 1827, 1941, 2012, 2138, 2160, 2282
BstDSI	CCRYGG	4 cut(s)	181, 360, 1647, 2299
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	7 cut(s)	1002, 1453, 1515, 1861, 1954, 2155, 2530
BstFNI	CGCG	2 cut(s)	1317, 2130
BstH2I	RGCGCY	1 cut(s)	1176
BstHHI	GCGC	5 cut(s)	403, 755, 1175, 1708, 2132
BstMAI	GTCTC	4 cut(s)	52, 1394, 2425, 2530
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	8 cut(s)	183, 761, 1114, 1172, 1367, 1793, 2324, 2566
BstNSI	RCATGY	8 cut(s)	923, 979, 1282, 1909, 2032, 2245, 2507, 2677
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	199, 833, 2467
BstSLI	GKGCMC	3 cut(s)	1168, 1573, 2103
BstUI	CGCG	2 cut(s)	1317, 2130
BstV1I	GCAGC	5 cut(s)	1382, 2044, 2339, 2487, 2569
BstV2I	GAAGAC	2 cut(s)	856, 2441
BstX2I	RGATCY	3 cut(s)	1297, 1818, 2350
BstYI	RGATCY	3 cut(s)	1297, 1818, 2350
BstZ17I	GTATAC	1 cut(s)	1861
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	6 cut(s)	186, 212, 1995, 2208, 2222, 2602
BtgI	CCRYGG	4 cut(s)	181, 360, 1647, 2299
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	7 cut(s)	1002, 1453, 1515, 1861, 1954, 2155, 2530
BtsIMutI	CAGTG	2 cut(s)	246, 627
BveI	ACCTGC	3 cut(s)	299, 755, 1475
Cac8I	GCNNGC	5 cut(s)	220, 859, 2103, 2294, 2332
CaiI	CAGNNNCTG	3 cut(s)	770, 873, 1748
CfoI	GCGC	5 cut(s)	403, 755, 1175, 1708, 2132
Cfr13I	GGNCC	2 cut(s)	211, 870
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	5 cut(s)	787, 1282, 1888, 2026, 2501
CviQI	GTAC	5 cut(s)	787, 1282, 1888, 2026, 2501
DdeI	CTNAG	9 cut(s)	426, 906, 1169, 1827, 1941, 2012, 2138, 2160, 2282
DraI	TTTAAA	1 cut(s)	1500
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	5 cut(s)	61, 72, 579, 1602, 2538
EarI	CTCTTC	5 cut(s)	61, 72, 579, 1602, 2538
Ecl136II	GAGCTC	2 cut(s)	191, 2662
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	4 cut(s)	360, 1647, 1996, 2299
Eco147I	AGGCCT	1 cut(s)	2222
Eco24I	GRGCYC	3 cut(s)	193, 1197, 2664
Eco31I	GGTCTC	1 cut(s)	2425
Eco47I	GGWCC	1 cut(s)	870
Eco47III	AGCGCT	1 cut(s)	1174
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	2 cut(s)	191, 2662
Eco57I	CTGAAG	4 cut(s)	519, 584, 850, 1656
Eco91I	GGTNACC	1 cut(s)	649
EcoICRI	GAGCTC	2 cut(s)	191, 2662
EcoO109I	RGGNCCY	1 cut(s)	870
EcoO65I	GGTNACC	1 cut(s)	649
EcoRI	GAATTC	2 cut(s)	448, 533
EcoT14I	CCWWGG	4 cut(s)	360, 1647, 1996, 2299
EcoT38I	GRGCYC	3 cut(s)	193, 1197, 2664
ErhI	CCWWGG	4 cut(s)	360, 1647, 1996, 2299
Esp3I	CGTCTC	1 cut(s)	52
FalI	AAGNNNNNCTT	6 cut(s)	920, 952, 1181, 1213, 1995, 2027
FauI	CCCGC	3 cut(s)	142, 820, 1938
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	1185
FblI	GTMKAC	3 cut(s)	494, 848, 1860
Fnu4HI	GCNGC	9 cut(s)	6, 9, 332, 1106, 1371, 2033, 2328, 2476, 2558
FokI	GGATG	7 cut(s)	1009, 1460, 1522, 1868, 1961, 2142, 2517
FriOI	GRGCYC	3 cut(s)	193, 1197, 2664
Fsp4HI	GCNGC	9 cut(s)	6, 9, 332, 1106, 1371, 2033, 2328, 2476, 2558
FspBI	CTAG	2 cut(s)	858, 1008
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	5 cut(s)	402, 754, 1174, 1707, 2131
GluI	GCNGC	9 cut(s)	6, 9, 332, 1106, 1371, 2033, 2328, 2476, 2558
HaeII	RGCGCY	1 cut(s)	1176
HaeIII	GGCC	6 cut(s)	186, 212, 1995, 2208, 2222, 2602
HapII	CCGG	7 cut(s)	26, 200, 654, 834, 1036, 1445, 2468
HgaI	GACGC	1 cut(s)	850
HhaI	GCGC	5 cut(s)	403, 755, 1175, 1708, 2132
Hin6I	GCGC	5 cut(s)	401, 753, 1173, 1706, 2130
HinP1I	GCGC	5 cut(s)	401, 753, 1173, 1706, 2130
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	2 cut(s)	1115, 1476
HinfI	GANTC	6 cut(s)	42, 196, 601, 1207, 1913, 2360
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	7 cut(s)	26, 200, 654, 834, 1036, 1445, 2468
HphI	GGTGA	7 cut(s)	5, 62, 491, 529, 643, 850, 1447
Hpy188III	TCNNGA	7 cut(s)	274, 1539, 1775, 1930, 2357, 2422, 2651
Hpy99I	CGWCG	1 cut(s)	2261
HpyAV	CCTTC	4 cut(s)	61, 559, 724, 2455
HpyCH4III	ACNGT	7 cut(s)	116, 250, 807, 1286, 1771, 1801, 2450
HpyCH4IV	ACGT	2 cut(s)	435, 789
HpyF10VI	GCNNNNNNNGC	8 cut(s)	183, 761, 1114, 1172, 1367, 1793, 2324, 2566
HpyF3I	CTNAG	9 cut(s)	426, 906, 1169, 1827, 1941, 2012, 2138, 2160, 2282
HpySE526I	ACGT	2 cut(s)	435, 789
HspAI	GCGC	5 cut(s)	401, 753, 1173, 1706, 2130
Ksp22I	TGATCA	1 cut(s)	1185
KspAI	GTTAAC	1 cut(s)	36
Lsp1109I	GCAGC	5 cut(s)	1382, 2044, 2339, 2487, 2569
LweI	GCATC	6 cut(s)	406, 807, 994, 1333, 1939, 1996
MaeI	CTAG	2 cut(s)	858, 1008
MaeII	ACGT	2 cut(s)	435, 789
MaeIII	GTNAC	5 cut(s)	256, 649, 989, 1901, 1954
MbiI	CCGCTC	1 cut(s)	1431
MflI	RGATCY	3 cut(s)	1297, 1818, 2350
MhlI	GDGCHC	6 cut(s)	193, 1168, 1197, 1573, 2103, 2664
MmeI	TCCRAC	5 cut(s)	937, 1710, 1783, 1833, 2145
MseI	TTAA	7 cut(s)	35, 810, 1113, 1230, 1499, 1533, 2456
MslI	CAYNNNNRTG	3 cut(s)	644, 918, 2304
MspA1I	CMGCKG	1 cut(s)	2478
MspI	CCGG	7 cut(s)	26, 200, 654, 834, 1036, 1445, 2468
MspR9I	CCNGG	3 cut(s)	201, 835, 2469
Mva1269I	GAATGC	3 cut(s)	333, 1363, 1666
MvnI	CGCG	2 cut(s)	1317, 2130
MwoI	GCNNNNNNNGC	8 cut(s)	183, 761, 1114, 1172, 1367, 1793, 2324, 2566
NciI	CCSGG	3 cut(s)	201, 835, 2469
NcoI	CCATGG	3 cut(s)	360, 1647, 2299
NdeI	CATATG	1 cut(s)	853
NheI	GCTAGC	1 cut(s)	857
NlaIV	GGNNCC	6 cut(s)	832, 1443, 1570, 2049, 2352, 2466
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	649, 1954
NsbI	TGCGCA	1 cut(s)	402
NspI	RCATGY	8 cut(s)	923, 979, 1282, 1909, 2032, 2245, 2507, 2677
NspV	TTCGAA	1 cut(s)	2250
PceI	AGGCCT	1 cut(s)	2222
PciI	ACATGT	2 cut(s)	975, 1278
PcsI	WCGNNNNNNNCGW	1 cut(s)	2256
PctI	GAATGC	3 cut(s)	333, 1363, 1666
PfeI	GAWTC	6 cut(s)	42, 196, 601, 1207, 1913, 2360
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	9 cut(s)	7, 10, 333, 1107, 1372, 2034, 2329, 2477, 2559
PpuMI	RGGWCCY	1 cut(s)	870
PscI	ACATGT	2 cut(s)	975, 1278
Psp124BI	GAGCTC	2 cut(s)	193, 2664
Psp5II	RGGWCCY	1 cut(s)	870
PspEI	GGTNACC	1 cut(s)	649
PspN4I	GGNNCC	6 cut(s)	832, 1443, 1570, 2049, 2352, 2466
PspPI	GGNCC	2 cut(s)	211, 870
PspPPI	RGGWCCY	1 cut(s)	870
PstNI	CAGNNNCTG	3 cut(s)	770, 873, 1748
PsuI	RGATCY	3 cut(s)	1297, 1818, 2350
PvuII	CAGCTG	1 cut(s)	2478
RsaI	GTAC	5 cut(s)	788, 1283, 1889, 2027, 2502
RsaNI	GTAC	5 cut(s)	787, 1282, 1888, 2026, 2501
RseI	CAYNNNNRTG	3 cut(s)	644, 918, 2304
SacI	GAGCTC	2 cut(s)	193, 2664
SaqAI	TTAA	7 cut(s)	35, 810, 1113, 1230, 1499, 1533, 2456
SatI	GCNGC	9 cut(s)	6, 9, 332, 1106, 1371, 2033, 2328, 2476, 2558
Sau96I	GGNCC	2 cut(s)	211, 870
ScrFI	CCNGG	3 cut(s)	201, 835, 2469
SduI	GDGCHC	6 cut(s)	193, 1168, 1197, 1573, 2103, 2664
SfaNI	GCATC	6 cut(s)	406, 807, 994, 1333, 1939, 1996
SfuI	TTCGAA	1 cut(s)	2250
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	644, 918, 2304
SmlI	CTYRAG	4 cut(s)	1432, 2036, 2224, 2355
SmoI	CTYRAG	4 cut(s)	1432, 2036, 2224, 2355
SseBI	AGGCCT	1 cut(s)	2222
SspMI	CTAG	2 cut(s)	858, 1008
SstI	GAGCTC	2 cut(s)	193, 2664
StuI	AGGCCT	1 cut(s)	2222
StyD4I	CCNGG	3 cut(s)	199, 833, 2467
StyI	CCWWGG	4 cut(s)	360, 1647, 1996, 2299
TaaI	ACNGT	7 cut(s)	116, 250, 807, 1286, 1771, 1801, 2450
TaiI	ACGT	2 cut(s)	438, 792
TaqI	TCGA	9 cut(s)	240, 321, 537, 1020, 1078, 1578, 1881, 2250, 2423
TatI	WGTACW	2 cut(s)	1887, 2025
TauI	GCSGC	2 cut(s)	334, 1108
TfiI	GAWTC	6 cut(s)	42, 196, 601, 1207, 1913, 2360
Tru1I	TTAA	7 cut(s)	35, 810, 1113, 1230, 1499, 1533, 2456
Tru9I	TTAA	7 cut(s)	35, 810, 1113, 1230, 1499, 1533, 2456
TscAI	CASTG	2 cut(s)	253, 627
TseFI	GTSAC	2 cut(s)	649, 1954
TseI	GCWGC	7 cut(s)	5, 8, 1370, 2032, 2327, 2475, 2557
Tsp45I	GTSAC	2 cut(s)	649, 1954
TspGWI	ACGGA	1 cut(s)	947
TspRI	CASTG	2 cut(s)	253, 627
VneI	GTGCAC	1 cut(s)	1164
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	7 cut(s)	142, 448, 533, 606, 1515, 2016, 2666
XceI	RCATGY	8 cut(s)	923, 979, 1282, 1909, 2032, 2245, 2507, 2677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2344
XmiI	GTMKAC	3 cut(s)	494, 848, 1860
XspI	CTAG	2 cut(s)	858, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.