Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Forward (+)

63894815 .. 63900611

Gene Structure 5797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0507700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGCACAGGATCTCTCGCCGCTCTCTCTCCACTCTCCTCCGCCACGCCGCACCTTACCGGAACTCCGCCGCCCCAATCTCTCACTCCGCCTCGGTGGTGGGAGAGACTGATACCAAAGTCAGATGGCACTCGGTGTTAGTCGGTGGGAAGTGTAACCCTGCCAAATCCACAACTCAAATAAACTTGAAAAATGGCCTCTATTTCGGCAACCGGTATGAGTCCACTGCTGCAGCCTCGGATGCAACAGCCGCACTGCCTGTTGAGAAATACGAGTATCAAGCTGAGGTTAGTCGCCTTATGGACCTCATTGTTAACAGCTTGTACAGCAACAAGGAGGTGTTCCTTCGAGAGCTTGTCAGCAATGCGAGTGATGCCTTGGACAAGCTCCGGTTTCTTAGTGTTACAGAACCTGACCTTTTGAAGGGTGGAGGTGAGCTTGATATCCGTATCCAGACTGATACTGACAATGGAATCATAAATATCACTGATTCTGGCATTGGAATGACTCGGGAAGAGCTTGTGGACTGTTTGGGAACAATTGCACAAAGTGGGACTTCAAAGTTCTTGAAGGCACTAAAGGATACTAAAGATGCTGGTGGTGACAGCAATTTAATTGGTCAGTTTGGTGTTGGCTTTTACTCCGCATTCCTGGTTGCAGATCGGGTTGTTGTCTCTACAAAGTCTCCGAAATCTGACAAACAATATGTATGGCAAGGAGAAGCAAATGCTAGCTCTTATACGATTCAGGAGGAGACCGACCCTGAGAAGATTCTTCCTAGGGGAACCCGCTTGACCTTGTATCTGAAGCGTGACGACAAAGGTTTTGCTCATCCAGAACGTATTCAGAAGCTCGTGAAAAACTATTCACAGTTTGTTTCTTTTCCTATATACACGTGGCAGGAAAAGGGATACACTAAAGAGGTTGAGGTCGATGAGGATCCAGCTGAATCCCAAAAAGATGAGCAAGATAACAAGACTGAGAAGAAGAAGAAAACTAAGACTGTTGTTGAGAAATACTGGGATTGGGATCTCACTAATGAAACACAACCAATATGGCTTCGCAATCCTAAAGAAGTCACTACAGAGGATTACAATGAGTTCTACAAGAAAACTTTTAATGAATACTTGGATCCACTGGCTTCTTCACACTTTACAACAGAGGGTGAAGTAGAATTCAGGTCTATATTATATGTCCCAGCTGTTACTCCTATGGGAAAGGATGACATGATCAATCCCAAGACAAAAAATATAAGGCTCTATGTGAAACGGGTGTTCATTTCAGATGACTTTGATGGAGAACTGTTCCCACGATACTTGAGCTTCATCAAAGGTGTTGTGGATTCAAATGATCTTCCACTCAACGTCTCACGTGAAATTCTTCAGGAGAGTCGCATTGTGCGGATTATGAGGAAGCGTTTAGTTCGAAAGGCCTTTGACATGATTCTGGGAATATCCATGAGTGAAAACAGAGAGGATTATGAAAAGTTCTGGGAAAATTTTGGCAAACACTTGAAACTGGGTTGCATTGAAGATCGTGAAAATCATAAACGTCTTGCCCCATTGCTTAGATTTTTCTCTTCCCAAAGTGAGGATGTTATGATCAGCTTGGATGAATATGTTGAGAACATGAAACCTGAGCAGAAGGATATCTATTTCATTGCTGCTGACAGTGTGACAAGCGCAAGTAATACGCCATTCCTGGAGAAACTTCTTCAGAAGGATCTTGAAGTACTGTATTTAGTTGATCCTATTGATGAGGTTGCCATTACAAACCTAAAATCATACAAGGAAAAGAATTTTGTTGATATTAGCAAGGAAGATCTGAATTTAGGGGATAAGAATGAGGAAAAAGAAAAGGAGATTAAGCAGGAGTTTGGCCAAACATGTGATTGGATCAAGAAGCGTTTGGGTGATAAAGTTGCCAGTGTTCAGATTTCAAACCGTCTTAGCACATCACCCTGCGTTCTTGTATCTGGGAAGTTCGGTTGGTCTGCCAACATGGAGAGGTTGATGAAGGCACAAACTGTTGGGGATACTTCTAGCTTAGAGTACATGAGAGGCAGAAGGGTCTTTGAGATTAATCCTGAGCACCCAATCATTCAAAACTTGAATGCTGCAAGTAGAGTTAATCCAGACGATGCAGATGCAATGAGAGCTATTGATCTTTTGTATGATGCAGCTTTGGTTTCTAGCGGTTTTACTCCCGAGAATCCAGCAGAGCTGGGTGGAAAGATTTATGAGATGATGGGGCTGGCTCTTTCAGGGAAATGGTCTGCACCTGTAGCCGAGGTCCAGGAGGTTCAGCGTCAAGAAGCCGCACCACAGCACAACAGCACCGAGACATTAGAGGCTGAGGTGGTTGAGCCAGTCCAAGCTGGTAGCCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

796

Amino Acids

90.17

Weight (kDa)

5.33

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	112 - 243	6.5e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	113 - 270	3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	275 - 776	4.1e-194	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	21
AclWI	GGATC	9 cut(s)	17, 932, 945, 1035, 1124, 1137, 1728, 1739, 1901
AcoI	YGGCCR	1 cut(s)	1876
AcsI	RAATTY	5 cut(s)	1172, 1374, 1495, 1795, 1825
AcuI	CTGAAG	3 cut(s)	824, 1364, 1697
AcvI	CACGTG	2 cut(s)	894, 1370
AdeI	CACNNNGTG	2 cut(s)	133, 548
AfaI	GTAC	3 cut(s)	323, 1731, 2051
AfiI	CCNNNNNNNGG	2 cut(s)	421, 1588
AflIII	ACRYGT	2 cut(s)	891, 1883
AgeI	ACCGGT	1 cut(s)	210
AjnI	CCWGG	3 cut(s)	648, 1698, 2292
Alw21I	GWGCWC	1 cut(s)	2091
Alw26I	GTCTC	6 cut(s)	98, 676, 687, 746, 1369, 2333
AlwI	GGATC	9 cut(s)	17, 932, 945, 1035, 1124, 1137, 1728, 1739, 1901
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	2 cut(s)	507, 2204
AoxI	GGCC	3 cut(s)	193, 1428, 1876
ApeKI	GCWGC	5 cut(s)	227, 230, 1661, 2114, 2177
ApoI	RAATTY	5 cut(s)	1172, 1374, 1495, 1795, 1825
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AseI	ATTAAT	1 cut(s)	2079
AsiGI	ACCGGT	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	840, 1377
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	1682
AspS9I	GGNCC	2 cut(s)	301, 2290
AsuHPI	GGTGA	5 cut(s)	443, 611, 1175, 1922, 1947
AsuII	TTCGAA	1 cut(s)	1423
AsuNHI	GCTAGC	1 cut(s)	728
AvaI	CYCGRG	2 cut(s)	507, 2204
AvaII	GGWCC	2 cut(s)	301, 2290
AvrII	CCTAGG	1 cut(s)	776
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	1878
BamHI	GGATCC	2 cut(s)	937, 1129
BauI	CACGAG	1 cut(s)	851
BbrPI	CACGTG	2 cut(s)	894, 1370
Bbv12I	GWGCWC	1 cut(s)	2091
BbvCI	CCTCAGC	2 cut(s)	282, 2352
BbvI	GCAGC	5 cut(s)	214, 242, 1648, 2101, 2189
BccI	CCATC	3 cut(s)	117, 1286, 2239
BcgI	CGANNNNNNTGC	2 cut(s)	2126, 2160
BciT130I	CCWGG	3 cut(s)	650, 1700, 2294
BciVI	GTATCC	4 cut(s)	458, 574, 902, 2026
BclI	TGATCA	2 cut(s)	1227, 1599
BcoDI	GTCTC	6 cut(s)	98, 676, 687, 746, 1369, 2333
BfaI	CTAG	4 cut(s)	729, 777, 2040, 2190
BfmI	CTRYAG	3 cut(s)	228, 1080, 2280
BfuI	GTATCC	4 cut(s)	458, 574, 902, 2026
BglII	AGATCT	1 cut(s)	1819
BlnI	CCTAGG	1 cut(s)	776
BmcAI	AGTACT	1 cut(s)	1731
Bme1390I	CCNGG	3 cut(s)	650, 1700, 2294
Bme18I	GGWCC	2 cut(s)	301, 2290
BmeT110I	CYCGRG	2 cut(s)	507, 2204
BmgT120I	GGNCC	2 cut(s)	301, 2290
BmiI	GGNNCC	3 cut(s)	784, 939, 1131
BmrFI	CCNGG	3 cut(s)	650, 1700, 2294
BmrI	ACTGGG	2 cut(s)	1027, 1526
BmsI	GCATC	6 cut(s)	229, 361, 580, 2128, 2134, 2164
BmtI	GCTAGC	1 cut(s)	732
BmuI	ACTGGG	2 cut(s)	1027, 1526
BpmI	CTGGAG	1 cut(s)	1721
Bpu10I	CCTNAGC	4 cut(s)	282, 1635, 2085, 2352
Bpu14I	TTCGAA	1 cut(s)	1423
BpuEI	CTTGAG	1 cut(s)	1336
BsaAI	YACGTR	2 cut(s)	894, 1370
BsaBI	GATNNNNATC	2 cut(s)	936, 1026
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	5 cut(s)	90, 234, 375, 776, 2286
BsaWI	WCCGGW	3 cut(s)	57, 210, 387
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 667, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 1588
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	5 cut(s)	1022, 1140, 1521, 1923, 2366
Bse3DI	GCAATG	4 cut(s)	367, 1559, 1656, 2154
Bse8I	GATNNNNATC	2 cut(s)	936, 1026
BseBI	CCWGG	3 cut(s)	650, 1700, 2294
BseDI	CCNNGG	5 cut(s)	90, 234, 375, 776, 2286
BseGI	GGATG	5 cut(s)	244, 829, 1225, 1597, 1615
BseJI	GATNNNNATC	2 cut(s)	936, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	421, 1588
BseMI	GCAATG	4 cut(s)	367, 1559, 1656, 2154
BseMII	CTCAG	6 cut(s)	273, 753, 969, 1626, 2076, 2343
BseNI	ACTGG	5 cut(s)	1022, 1140, 1521, 1923, 2366
BseRI	GAGGAG	2 cut(s)	26, 764
BseXI	GCAGC	5 cut(s)	214, 242, 1648, 2101, 2189
BseYI	CCCAGC	2 cut(s)	1195, 2221
BsgI	GTGCAG	1 cut(s)	2259
BshFI	GGCC	3 cut(s)	195, 1430, 1878
BshTI	ACCGGT	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	2091
BsiHKCI	CYCGRG	2 cut(s)	507, 2204
BsiSI	CCGG	3 cut(s)	58, 211, 388
BslFI	GGGAC	2 cut(s)	565, 1178
BslI	CCNNNNNNNGG	2 cut(s)	421, 1588
BsmAI	GTCTC	6 cut(s)	98, 676, 687, 746, 1369, 2333
BsmBI	CGTCTC	1 cut(s)	1369
BsmFI	GGGAC	2 cut(s)	565, 1178
BsmI	GAATGC	2 cut(s)	644, 2116
BsnI	GGCC	3 cut(s)	195, 1430, 1878
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	2 cut(s)	507, 2204
Bsp119I	TTCGAA	1 cut(s)	1423
Bsp1286I	GDGCHC	1 cut(s)	2091
Bsp1407I	TGTACA	1 cut(s)	321
BspANI	GGCC	3 cut(s)	195, 1430, 1878
BspCNI	CTCAG	6 cut(s)	274, 754, 970, 1627, 2077, 2344
BspLI	GGNNCC	3 cut(s)	784, 939, 1131
BspMAI	CTGCAG	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	732
BspPI	GGATC	9 cut(s)	17, 932, 945, 1035, 1124, 1137, 1728, 1739, 1901
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	1423
BspTNI	GGTCTC	1 cut(s)	746
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	4 cut(s)	367, 1559, 1656, 2154
BsrFI	RCCGGY	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	5 cut(s)	1022, 1140, 1521, 1923, 2366
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	5 cut(s)	90, 234, 375, 776, 2286
BssSI	CACGAG	1 cut(s)	851
BssT1I	CCWWGG	2 cut(s)	375, 776
Bst2BI	CACGAG	1 cut(s)	851
Bst2UI	CCWGG	3 cut(s)	650, 1700, 2294
Bst4CI	ACNGT	8 cut(s)	527, 870, 1003, 1302, 1670, 1734, 1943, 2026
Bst6I	CTCTTC	2 cut(s)	507, 1582
BstAUI	TGTACA	1 cut(s)	321
BstBAI	YACGTR	2 cut(s)	894, 1370
BstBI	TTCGAA	1 cut(s)	1423
BstC8I	GCNNGC	2 cut(s)	730, 2253
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	5 cut(s)	244, 829, 1225, 1597, 1615
BstHHI	GCGC	1 cut(s)	1682
BstMAI	GTCTC	6 cut(s)	98, 676, 687, 746, 1369, 2333
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 248, 324, 371, 2153, 2282
BstNI	CCWGG	3 cut(s)	650, 1700, 2294
BstNSI	RCATGY	1 cut(s)	1887
BstSCI	CCNGG	3 cut(s)	648, 1698, 2292
BstSFI	CTRYAG	3 cut(s)	228, 1080, 2280
BstV1I	GCAGC	5 cut(s)	214, 242, 1648, 2101, 2189
BstX2I	RGATCY	6 cut(s)	9, 937, 1027, 1129, 1720, 1819
BstYI	RGATCY	6 cut(s)	9, 937, 1027, 1129, 1720, 1819
BsuI	GTATCC	4 cut(s)	458, 574, 902, 2026
BsuRI	GGCC	3 cut(s)	195, 1430, 1878
BtsCI	GGATG	5 cut(s)	244, 829, 1225, 1597, 1615
BtsI	GCAGTG	2 cut(s)	222, 251
BtsIMutI	CAGTG	6 cut(s)	222, 251, 483, 1133, 1675, 1930
Cac8I	GCNNGC	2 cut(s)	730, 2253
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	1682
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	301, 2290
CseI	GACGC	1 cut(s)	2294
Csp6I	GTAC	3 cut(s)	322, 1730, 2050
CspAI	ACCGGT	1 cut(s)	210
CspCI	CAANNNNNGTGG	2 cut(s)	1296, 1331
CviAII	CATG	7 cut(s)	1225, 1438, 1456, 1627, 1884, 1999, 2053
CviQI	GTAC	3 cut(s)	322, 1730, 2050
DraIII	CACNNNGTG	2 cut(s)	133, 548
EaeI	YGGCCR	1 cut(s)	1876
Eam1104I	CTCTTC	2 cut(s)	507, 1582
EarI	CTCTTC	2 cut(s)	507, 1582
EciI	GGCGGA	3 cut(s)	29, 55, 76
Eco130I	CCWWGG	2 cut(s)	375, 776
Eco147I	AGGCCT	1 cut(s)	1430
Eco31I	GGTCTC	1 cut(s)	746
Eco32I	GATATC	2 cut(s)	442, 1648
Eco47I	GGWCC	2 cut(s)	301, 2290
Eco57I	CTGAAG	3 cut(s)	824, 1364, 1697
Eco72I	CACGTG	2 cut(s)	894, 1370
Eco88I	CYCGRG	2 cut(s)	507, 2204
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	1172
EcoRII	CCWGG	3 cut(s)	648, 1698, 2292
EcoRV	GATATC	2 cut(s)	442, 1648
EcoT14I	CCWWGG	2 cut(s)	375, 776
ErhI	CCWWGG	2 cut(s)	375, 776
Esp3I	CGTCTC	1 cut(s)	1369
FaeI	CATG	7 cut(s)	1228, 1441, 1459, 1630, 1887, 2002, 2056
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	2 cut(s)	565, 1178
FatI	CATG	7 cut(s)	1224, 1437, 1455, 1626, 1883, 1998, 2052
FauI	CCCGC	1 cut(s)	794
FbaI	TGATCA	2 cut(s)	1227, 1599
FokI	GGATG	5 cut(s)	251, 816, 1232, 1604, 1622
FspBI	CTAG	4 cut(s)	729, 777, 2040, 2190
GlaI	GCGC	1 cut(s)	1681
GsaI	CCCAGC	2 cut(s)	1199, 2225
GsuI	CTGGAG	1 cut(s)	1721
HaeIII	GGCC	3 cut(s)	195, 1430, 1878
HapII	CCGG	3 cut(s)	58, 211, 388
HgaI	GACGC	1 cut(s)	2294
HhaI	GCGC	1 cut(s)	1682
Hin1II	CATG	7 cut(s)	1228, 1441, 1459, 1630, 1887, 2002, 2056
Hin6I	GCGC	1 cut(s)	1680
HinP1I	GCGC	1 cut(s)	1680
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	58, 211, 388
HphI	GGTGA	5 cut(s)	443, 611, 1175, 1922, 1947
Hpy166II	GTNNAC	3 cut(s)	222, 313, 523
Hpy8I	GTNNAC	3 cut(s)	222, 313, 523
HpyAV	CCTTC	7 cut(s)	353, 415, 562, 1636, 1711, 2008, 2058
HpyCH4III	ACNGT	8 cut(s)	527, 870, 1003, 1302, 1670, 1734, 1943, 2026
HpyCH4IV	ACGT	5 cut(s)	838, 893, 1362, 1369, 1549
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 248, 324, 371, 2153, 2282
HpySE526I	ACGT	5 cut(s)	838, 893, 1362, 1369, 1549
Hsp92II	CATG	7 cut(s)	1228, 1441, 1459, 1630, 1887, 2002, 2056
HspAI	GCGC	1 cut(s)	1680
Ksp22I	TGATCA	2 cut(s)	1227, 1599
KspAI	GTTAAC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	5 cut(s)	214, 242, 1648, 2101, 2189
LweI	GCATC	6 cut(s)	229, 361, 580, 2128, 2134, 2164
MaeI	CTAG	4 cut(s)	729, 777, 2040, 2190
MaeII	ACGT	5 cut(s)	838, 893, 1362, 1369, 1549
MaeIII	GTNAC	7 cut(s)	152, 400, 599, 809, 1075, 1201, 1672
MbiI	CCGCTC	1 cut(s)	21
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	6 cut(s)	9, 937, 1027, 1129, 1720, 1819
MhlI	GDGCHC	1 cut(s)	2091
MlsI	TGGCCA	1 cut(s)	1878
MluCI	AATT	8 cut(s)	537, 607, 612, 1172, 1374, 1495, 1795, 1825
MluNI	TGGCCA	1 cut(s)	1878
MlyI	GAGTC	3 cut(s)	227, 499, 1396
Mox20I	TGGCCA	1 cut(s)	1878
MroXI	GAANNNNTTC	2 cut(s)	840, 1377
MscI	TGGCCA	1 cut(s)	1878
MseI	TTAA	6 cut(s)	312, 611, 1116, 1863, 2079, 2127
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	1878
MspA1I	CMGCKG	2 cut(s)	944, 1199
MspI	CCGG	3 cut(s)	58, 211, 388
MspR9I	CCNGG	3 cut(s)	650, 1700, 2294
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	644, 2116
MvaI	CCWGG	3 cut(s)	650, 1700, 2294
MwoI	GCNNNNNNNGC	6 cut(s)	239, 248, 324, 371, 2153, 2282
NheI	GCTAGC	1 cut(s)	728
NlaIII	CATG	7 cut(s)	1228, 1441, 1459, 1630, 1887, 2002, 2056
NlaIV	GGNNCC	3 cut(s)	784, 939, 1131
NmeAIII	GCCGAG	1 cut(s)	2311
NmuCI	GTSAC	4 cut(s)	599, 809, 1075, 1672
NspI	RCATGY	1 cut(s)	1887
NspV	TTCGAA	1 cut(s)	1423
PceI	AGGCCT	1 cut(s)	1430
PciI	ACATGT	1 cut(s)	1883
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	2 cut(s)	644, 2116
PdmI	GAANNNNTTC	2 cut(s)	840, 1377
PfeI	GAWTC	8 cut(s)	471, 488, 742, 769, 947, 1340, 1441, 2209
PfoI	TCCNGGA	2 cut(s)	1698, 2292
PinAI	ACCGGT	1 cut(s)	210
PleI	GAGTC	3 cut(s)	226, 499, 1395
PmaCI	CACGTG	2 cut(s)	894, 1370
PmlI	CACGTG	2 cut(s)	894, 1370
PpsI	GAGTC	3 cut(s)	226, 499, 1395
Ppu21I	YACGTR	2 cut(s)	894, 1370
PscI	ACATGT	1 cut(s)	1883
PshBI	ATTAAT	1 cut(s)	2079
Psp6I	CCWGG	3 cut(s)	648, 1698, 2292
PspCI	CACGTG	2 cut(s)	894, 1370
PspFI	CCCAGC	2 cut(s)	1195, 2221
PspGI	CCWGG	3 cut(s)	648, 1698, 2292
PspN4I	GGNNCC	3 cut(s)	784, 939, 1131
PspPI	GGNCC	2 cut(s)	301, 2290
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	6 cut(s)	9, 937, 1027, 1129, 1720, 1819
PvuII	CAGCTG	2 cut(s)	944, 1199
RsaI	GTAC	3 cut(s)	323, 1731, 2051
RsaNI	GTAC	3 cut(s)	322, 1730, 2050
RseI	CAYNNNNRTG	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	6 cut(s)	312, 611, 1116, 1863, 2079, 2127
Sau96I	GGNCC	2 cut(s)	301, 2290
ScaI	AGTACT	1 cut(s)	1731
SchI	GAGTC	3 cut(s)	227, 499, 1396
ScrFI	CCNGG	3 cut(s)	650, 1700, 2294
SduI	GDGCHC	1 cut(s)	2091
SfaNI	GCATC	6 cut(s)	229, 361, 580, 2128, 2134, 2164
SfcI	CTRYAG	3 cut(s)	228, 1080, 2280
SfuI	TTCGAA	1 cut(s)	1423
SinI	GGWCC	2 cut(s)	301, 2290
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1315
SmoI	CTYRAG	1 cut(s)	1315
Sse9I	AATT	8 cut(s)	537, 607, 612, 1172, 1374, 1495, 1795, 1825
SseBI	AGGCCT	1 cut(s)	1430
SspMI	CTAG	4 cut(s)	729, 777, 2040, 2190
StuI	AGGCCT	1 cut(s)	1430
StyD4I	CCNGG	3 cut(s)	648, 1698, 2292
StyI	CCWWGG	2 cut(s)	375, 776
TaaI	ACNGT	8 cut(s)	527, 870, 1003, 1302, 1670, 1734, 1943, 2026
TaiI	ACGT	5 cut(s)	841, 896, 1365, 1372, 1552
TaqI	TCGA	3 cut(s)	346, 930, 1423
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	8 cut(s)	537, 607, 612, 1172, 1374, 1495, 1795, 1825
TatI	WGTACW	3 cut(s)	321, 1729, 2049
TauI	GCSGC	5 cut(s)	21, 50, 71, 251, 2318
TfiI	GAWTC	8 cut(s)	471, 488, 742, 769, 947, 1340, 1441, 2209
Tru1I	TTAA	6 cut(s)	312, 611, 1116, 1863, 2079, 2127
Tru9I	TTAA	6 cut(s)	312, 611, 1116, 1863, 2079, 2127
TscAI	CASTG	6 cut(s)	229, 258, 490, 1140, 1675, 1930
TseFI	GTSAC	4 cut(s)	599, 809, 1075, 1672
TseI	GCWGC	5 cut(s)	227, 230, 1661, 2114, 2177
Tsp45I	GTSAC	4 cut(s)	599, 809, 1075, 1672
TspDTI	ATGAA	9 cut(s)	1053, 1134, 1264, 1312, 1494, 1626, 1643, 1645, 2027
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	6 cut(s)	229, 258, 490, 1140, 1675, 1930
VpaK11BI	GGWCC	2 cut(s)	301, 2290
VspI	ATTAAT	1 cut(s)	2079
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	5 cut(s)	1172, 1374, 1495, 1795, 1825
XceI	RCATGY	1 cut(s)	1887
XmaJI	CCTAGG	1 cut(s)	776
XmnI	GAANNNNTTC	2 cut(s)	840, 1377
XspI	CTAG	4 cut(s)	729, 777, 2040, 2190
ZrmI	AGTACT	1 cut(s)	1731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.