Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015462

Physical Location & Seq

Genomic Coordinates Forward (+)

82902291 .. 82905198

Gene Structure 2908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG596100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGGCTACTCCTCACCATCATCTCCTTCACACTTGCTTAACCAGACTCTTCTCCTTATTCACCAAAAAAAAAAAAACCAGACTCTTCTCCTTCCCTCTAAAACCTCTCTACCCAAAACCCCTACCCCTATTTTTCACATTCTCTACTCTCACTCGCCCCAACCAAACAACACCCACCACAAATTTCAAAACTTTCTCTCAAATTTTCCAGCAATGCTCCCATGCCAGAGCTCTGAACCCGGGAAAACAGGCCCACGCCCGCATGCTCGTTTCCGGGTTCGAGCCCTCCGTCTTCGTTACGAACTGTCTCATCCAAATGTATGTGAAATGCTGGGTCTTGGGTTATGCAGCCAAGGTGTTCGATGAAATGCCTCAACGGGACACGGTGTCCTGGAACACCATGATTTTCGGGTATGCCGAGAGTGGCGACATGGGGTCTGCGCAGGCTTGTTTTGATGCCATGCCGGAGAGAGATGTGGTTTCTTGGAATTCGTTGATTTCGGGGTACTTGCAGAATGGGGAGTGTTTGAAGTCCATTGATGTTTATGTGAAGATGGGGAGTGCAGGGGTGGGATGTGACCGTACTACATCTGCTGTTGTTCTGAAAGCGTGTGCGGTGATGGAAGAGATTGAATTGGGGACTCAAATTCATTGTGTTGCGGTCAAAATGGCTTTCGACATTGATGTGTTCACGGGTAGTGCTTTAGCCGACATGTATGGCAAGTGTAAAAGATTGGATTGTTCGCTACAGGTTTTTCGTGAATTGCCTGAAAAGAATTCAGTCTCGTGGAGCGCTGTAATTGCAGGTTCGGTTCAGAATGATAGATTTGCTATGGGTATAGAACTATTTAATGAGATGCAGAAAGCAGGCATTGGGGTGAGCCAATCTACCTATGCTAGCGTTTTCAGGTCTTGTGCAGGATTATCCGCGTACAGCTTAGGCACTCAGTTACATGGACGTGCTATAAAAACACAATTTCATTCTGATGTCGTAGTTGGTACTGCCACATTGGACATGTATGCAAAATGTGACAATGTAGCTGATGCGAGAAAGATATTTAACTCGATGCCAAACCGAAGTTTGCAGTCATATAATGCAATGATAGTTGGCTATGCTCGAAATGGGCGAGGTTTTGAAGCTCTGCAGCTATTTATGCTTCTGCGGAAGTCTGGCATTTGTTTTGATGAAATAACGTTGTCTGGCGCACTTAGTGCTTGTGCAATGATCAAAGGACACTTGGAGGGCCTTCAACTACAAGGATTAGTTGTTAAGAGTAGCTTCAGATCCAATGTATGTGTAACAAATGCCATTCTCGACATGTATGGTAAATGTGGAGATGTGTTGGGAGCTTCTTACGTGTTTGATGAGATGGTAAGAAGAGATGCTGTGTCTTGGAATGCAATCATTGCAGCTCATGGACAGAACAAAAATAAAGAGGAAACACTTTCTTGTTTTGTTTCCATGCTCCGCTCAAGGATGGAACCTGACGAGTTCACCTATGGTAGTGTTTTAAGAGCTTGTGCAGGTCAGCATTCTTTAAACCATGGTATGGAAATCCATAGCAGAATAATTAAATCTGGAATGGGCATGAACTTGTTTATTGGAGGTGCCCTTGTTGATATGTACTCCAAGTGTGGAATGATGGAAGAGGCTGAAAAAATACATCACAGAACAGAACACACGATGGTCTCATGGAATGCAATCATATCTGGTTTCTCACTGCTGAAGCAAAATGAGGATGCACAGACATTTTTTTCTCAGATGTTGGAGATGGGAGCAAAGCCTGATAATTTCACATATGCAACAGTGCTTGATACCTGTGCTAATTTGGCTACTGTTGGACTTGGGAAGCAGATCCATGCTCAAATTATCAAGCATGAATTGCAATCGGATGTATATGTGACCAGCACTCTTGTTGATATGTATGCCAAGTGTGGTAACATGCAAGACTCTCATCTAATGTTTAAGAAAGCACCTAAGCGGGATGCTGTTACATGGAATGCCATGATTTCTGGCTATGCGAACTATGGTCTCGGAGAAGATGCCCTTAGAATTTTTGACAATATGCAGCTTGAGAATGTGGAGCCAAACCACGTAACTTTTGTTTCTGTCCTCCGAGCCTGTGGACATATTGGAAATGCTGAAAAAGGTTTGTACTACTTCCGCACAATGCTTTCTGACTATGGGTTGAAACCTCAATTGGAGCATTACTCGTGTATGGTGGATATTATAGGGAGGTCAGGCCAAGTAGATCAAGCACTGAGGCTTATTCAAGATATGCCTTTTGAACCTGATGATGTAATATGGAGAACTCTGCTCAGCATTTGCAAGCTTCATGGGAATGTACAAGTGGCTGAAATAGCAGCCAACTCTATTTGGCAATTGGATCCGCAAGACTCTTCTACCTATGTTCTGTTGTCAAATATATATGCTGAAGCTGGAATGTGGGGTGAGGTCTTGGAGATGAGGAAAACAATGAGGTATAATAGGATGAAGAAGGAGCCGGGTTGCAGCTGGATTGAGGTAAAAGATGAAGTACATGCATTTTTTGTTGGGGACAAGGCTCATCCAAGAAGTAAGGAGGTATATGAGAGACTTGATTTGTTAGTTGTTCAGATGATGAGGATTGGGTATAGGCCAGAAATTGAATTTGTGCTTGATGAGGAGATGGAAGAGCAGGAGCACCTAGAGTGGGCATGTATTGATTGGAACTTTATACATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

908

Amino Acids

101.82

Weight (kDa)

6.35

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 205	4.5e-07	PPR repeat family
PPR_2	PF13041	258 - 306	2.2e-07	PPR repeat family
PPR_2	PF13041	363 - 407	8.6e-06	PPR repeat family
PPR	PF01535	363 - 392	2.4e-06	PPR repeat
PPR_2	PF13041	461 - 508	1.3e-09	PPR repeat family
PPR_2	PF13041	562 - 609	6e-10	PPR repeat family
PPR_3	PF13812	661 - 709	9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	662 - 709	7.9e-13	PPR repeat family
PPR	PF01535	664 - 693	6.4e-07	PPR repeat
E_motif	PF20431	779 - 841	2.3e-21	E motif
Eplus_motif	PF20430	846 - 867	6.1e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02330
fragaria_vesca	FvH4_6g28230
malus_domestica	MD09G1077900.v1.1 MD17G1068000.v1.1
prunus_persica	Prupe.3G143100_v2.0.a1
pyrus_communis	pycom17g06860
rosa_chinensis	RchiOBHm_Chr2g0164271
rosa_laevigata	RLG00000021450
rosa_multiflora	Rmu_sc0007154.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086650
rosa_rugosa	Rorug02G0507700
rosa_samantha	Rh2AG575700 Rh2BG586800 Rh2CG557300 Rh2DG596100
rosa_wichuraiana	Rw2G047670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	2 cut(s)	794, 1514
AccB1I	GGYRCC	1 cut(s)	1607
AccB7I	CCANNNNNTGG	1 cut(s)	1549
AccBSI	CCGCTC	1 cut(s)	1470
AccII	CGCG	1 cut(s)	929
AciI	CCGC	9 cut(s)	259, 614, 659, 927, 1162, 1468, 1981, 2164, 2390
AclI	AACGTT	1 cut(s)	1193
AclWI	GGATC	4 cut(s)	1278, 1849, 2381, 2394
AcsI	RAATTY	7 cut(s)	181, 201, 487, 645, 775, 2052, 2648
AcuI	CTGAAG	3 cut(s)	1264, 1745, 2454
AdeI	CACNNNGTG	1 cut(s)	1211
AfaI	GTAC	8 cut(s)	506, 583, 932, 1000, 1625, 2156, 2346, 2538
AfeI	AGCGCT	1 cut(s)	793
AfiI	CCNNNNNNNGG	2 cut(s)	1549, 2692
AflIII	ACRYGT	5 cut(s)	711, 1014, 1317, 1356, 2719
AgsI	TTSAA	9 cut(s)	187, 529, 632, 1136, 1250, 2191, 2273, 2288, 2648
AhdI	GACNNNNNGTC	2 cut(s)	385, 433
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	2183, 2215
Alw21I	GWGCWC	2 cut(s)	232, 2685
Alw26I	GTCTC	5 cut(s)	311, 787, 1693, 2036, 2587
AlwI	GGATC	4 cut(s)	1278, 1849, 2381, 2394
Ama87I	CYCGRG	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	793
AoxI	GGCC	4 cut(s)	249, 1243, 2242, 2636
ApeKI	GCWGC	6 cut(s)	347, 1144, 1409, 2068, 2363, 2511
ApoI	RAATTY	7 cut(s)	181, 201, 487, 645, 775, 2052, 2648
AspLEI	GCGC	3 cut(s)	442, 794, 1205
AspS9I	GGNCC	2 cut(s)	250, 1243
AsuC2I	CCSGG	4 cut(s)	239, 240, 274, 2505
AsuHPI	GGTGA	6 cut(s)	5, 52, 628, 889, 1486, 2462
AsuNHI	GCTAGC	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	1612
BamHI	GGATCC	1 cut(s)	2386
BanI	GGYRCC	1 cut(s)	1607
BanII	GRGCYC	2 cut(s)	232, 285
BauI	CACGAG	2 cut(s)	784, 2212
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	232, 2685
BbvI	GCAGC	6 cut(s)	359, 1156, 1421, 2080, 2375, 2523
BccI	CCATC	9 cut(s)	24, 547, 613, 1363, 1471, 1636, 1678, 1765, 2662
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	1 cut(s)	1224
BcnI	CCSGG	4 cut(s)	239, 240, 274, 2505
BcoDI	GTCTC	5 cut(s)	311, 787, 1693, 2036, 2587
BfaI	CTAG	2 cut(s)	897, 2687
BfmI	CTRYAG	2 cut(s)	746, 1142
BfoI	RGCGCY	1 cut(s)	795
BfuAI	ACCTGC	2 cut(s)	794, 1514
BisI	GCNGC	6 cut(s)	348, 1145, 1410, 2069, 2364, 2512
BlpI	GCTNAGC	1 cut(s)	2318
BlsI	GCNGC	6 cut(s)	349, 1146, 1411, 2070, 2365, 2513
Bme1390I	CCNGG	5 cut(s)	239, 240, 274, 391, 2505
BmeRI	GACNNNNNGTC	2 cut(s)	385, 433
BmeT110I	CYCGRG	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	250, 1243
BmiI	GGNNCC	5 cut(s)	1482, 1609, 2085, 2388, 2502
BmrFI	CCNGG	5 cut(s)	239, 240, 274, 391, 2505
BmsI	GCATC	8 cut(s)	445, 846, 1033, 1056, 1372, 1729, 1975, 2032
BmtI	GCTAGC	1 cut(s)	900
BpiI	GAAGAC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	2195, 2227
Bpu10I	CCTNAGC	2 cut(s)	937, 1977
Bpu1102I	GCTNAGC	1 cut(s)	2318
BpuEI	CTTGAG	2 cut(s)	1456, 2093
BpuMI	CCSGG	4 cut(s)	239, 240, 274, 2505
BsaAI	YACGTR	2 cut(s)	1357, 2095
BsaI	GGTCTC	2 cut(s)	1693, 2036
BsaJI	CCNNGG	3 cut(s)	238, 351, 1543
Bsc4I	CCNNNNNNNGG	2 cut(s)	1549, 2692
Bse3DI	GCAATG	4 cut(s)	218, 1104, 1227, 1404
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	3 cut(s)	238, 351, 1543
BseGI	GGATG	8 cut(s)	309, 578, 1482, 1744, 1897, 1990, 2496, 2566
BseLI	CCNNNNNNNGG	2 cut(s)	1549, 2692
BseMI	GCAATG	4 cut(s)	218, 1104, 1227, 1404
BseMII	CTCAG	4 cut(s)	959, 1772, 2252, 2332
BseRI	GAGGAG	1 cut(s)	2678
BseSI	GKGCMC	1 cut(s)	1612
BseXI	GCAGC	6 cut(s)	359, 1156, 1421, 2080, 2375, 2523
BseYI	CCCAGC	1 cut(s)	330
BsgI	GTGCAG	3 cut(s)	582, 936, 1542
Bsh1236I	CGCG	1 cut(s)	929
BshFI	GGCC	4 cut(s)	251, 1245, 2244, 2638
BshNI	GGYRCC	1 cut(s)	1607
BsiHKAI	GWGCWC	2 cut(s)	232, 2685
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	4 cut(s)	239, 273, 464, 2504
BslFI	GGGAC	3 cut(s)	392, 652, 2570
BslI	CCNNNNNNNGG	2 cut(s)	1549, 2692
BsmAI	GTCTC	5 cut(s)	311, 787, 1693, 2036, 2587
BsmFI	GGGAC	3 cut(s)	392, 652, 2570
BsmI	GAATGC	4 cut(s)	1402, 1531, 1702, 2005
BsnI	GGCC	4 cut(s)	251, 1245, 2244, 2638
Bso31I	GGTCTC	2 cut(s)	1693, 2036
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	4 cut(s)	232, 285, 1612, 2685
Bsp1407I	TGTACA	1 cut(s)	2344
Bsp143I	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
Bsp1720I	GCTNAGC	1 cut(s)	2318
Bsp19I	CCATGG	1 cut(s)	1543
BspACI	CCGC	9 cut(s)	259, 614, 659, 927, 1162, 1468, 1981, 2164, 2390
BspANI	GGCC	4 cut(s)	251, 1245, 2244, 2638
BspCNI	CTCAG	4 cut(s)	958, 1771, 2253, 2331
BspFNI	CGCG	1 cut(s)	929
BspLI	GGNNCC	5 cut(s)	1482, 1609, 2085, 2388, 2502
BspMAI	CTGCAG	1 cut(s)	1146
BspMI	ACCTGC	2 cut(s)	794, 1514
BspOI	GCTAGC	1 cut(s)	900
BspPI	GGATC	4 cut(s)	1278, 1849, 2381, 2394
BspQI	GCTCTTC	1 cut(s)	2667
BspT107I	GGYRCC	1 cut(s)	1607
BspTNI	GGTCTC	2 cut(s)	1693, 2036
BsrBI	CCGCTC	1 cut(s)	1470
BsrDI	GCAATG	4 cut(s)	218, 1104, 1227, 1404
BsrGI	TGTACA	1 cut(s)	2344
BssECI	CCNNGG	3 cut(s)	238, 351, 1543
BssMI	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
BssSI	CACGAG	2 cut(s)	784, 2212
BssT1I	CCWWGG	2 cut(s)	351, 1543
Bst2BI	CACGAG	2 cut(s)	784, 2212
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	5 cut(s)	305, 385, 581, 1807, 1837
Bst6I	CTCTTC	7 cut(s)	53, 89, 618, 1372, 1641, 2404, 2667
BstAPI	GCANNNNNTGC	3 cut(s)	1211, 1406, 1882
BstAUI	TGTACA	1 cut(s)	2344
BstBAI	YACGTR	2 cut(s)	1357, 2095
BstC8I	GCNNGC	6 cut(s)	259, 263, 444, 868, 898, 2330
BstDEI	CTNAG	8 cut(s)	937, 945, 1208, 1758, 1977, 2048, 2261, 2318
BstDSI	CCRYGG	1 cut(s)	1543
BstF5I	GGATG	8 cut(s)	309, 578, 1482, 1744, 1897, 1990, 2496, 2566
BstFNI	CGCG	1 cut(s)	929
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	3 cut(s)	442, 794, 1205
BstKTI	GATC	5 cut(s)	1227, 1286, 1857, 2254, 2389
BstMAI	GTCTC	5 cut(s)	311, 787, 1693, 2036, 2587
BstMBI	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
BstMWI	GCNNNNNNNGC	7 cut(s)	800, 1153, 1211, 1406, 1829, 1882, 2360
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	8 cut(s)	265, 715, 1018, 1321, 1945, 2543, 2700, 2723
BstSCI	CCNGG	5 cut(s)	237, 238, 272, 389, 2503
BstSFI	CTRYAG	2 cut(s)	746, 1142
BstSLI	GKGCMC	1 cut(s)	1612
BstUI	CGCG	1 cut(s)	929
BstV1I	GCAGC	6 cut(s)	359, 1156, 1421, 2080, 2375, 2523
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	1283, 1854, 2386
BstYI	RGATCY	3 cut(s)	1283, 1854, 2386
BsuRI	GGCC	4 cut(s)	251, 1245, 2244, 2638
BtgI	CCRYGG	1 cut(s)	1543
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	8 cut(s)	309, 578, 1482, 1744, 1897, 1990, 2496, 2566
BtsI	GCAGTG	1 cut(s)	1718
BtsIMutI	CAGTG	3 cut(s)	1718, 1812, 2258
BveI	ACCTGC	2 cut(s)	794, 1514
Cac8I	GCNNGC	6 cut(s)	259, 263, 444, 868, 898, 2330
CfoI	GCGC	3 cut(s)	442, 794, 1205
Cfr13I	GGNCC	2 cut(s)	250, 1243
Cfr9I	CCCGGG	1 cut(s)	238
Csp6I	GTAC	8 cut(s)	505, 582, 931, 999, 1624, 2155, 2345, 2537
CviQI	GTAC	8 cut(s)	505, 582, 931, 999, 1624, 2155, 2345, 2537
DdeI	CTNAG	8 cut(s)	937, 945, 1208, 1758, 1977, 2048, 2261, 2318
DpnI	GATC	5 cut(s)	1226, 1285, 1856, 2253, 2388
DpnII	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
DraI	TTTAAA	1 cut(s)	1539
DraIII	CACNNNGTG	1 cut(s)	1211
DriI	GACNNNNNGTC	2 cut(s)	385, 433
Eam1104I	CTCTTC	7 cut(s)	53, 89, 618, 1372, 1641, 2404, 2667
Eam1105I	GACNNNNNGTC	2 cut(s)	385, 433
EarI	CTCTTC	7 cut(s)	53, 89, 618, 1372, 1641, 2404, 2667
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	351, 1543
Eco24I	GRGCYC	2 cut(s)	232, 285
Eco31I	GGTCTC	2 cut(s)	1693, 2036
Eco47III	AGCGCT	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	1264, 1745, 2454
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	1243
EcoRI	GAATTC	2 cut(s)	487, 775
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	351, 1543
EcoT22I	ATGCAT	1 cut(s)	2545
EcoT38I	GRGCYC	2 cut(s)	232, 285
ErhI	CCWWGG	2 cut(s)	351, 1543
FalI	AAGNNNNNCTT	4 cut(s)	1262, 1294, 2031, 2063
FaqI	GGGAC	3 cut(s)	392, 652, 2570
FauI	CCCGC	2 cut(s)	266, 1974
FauNDI	CATATG	1 cut(s)	1798
FbaI	TGATCA	1 cut(s)	1224
Fnu4HI	GCNGC	6 cut(s)	348, 1145, 1410, 2069, 2364, 2512
FokI	GGATG	8 cut(s)	296, 585, 1489, 1751, 1904, 1997, 2503, 2553
FriOI	GRGCYC	2 cut(s)	232, 285
Fsp4HI	GCNGC	6 cut(s)	348, 1145, 1410, 2069, 2364, 2512
FspBI	CTAG	2 cut(s)	897, 2687
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	3 cut(s)	441, 793, 1204
GluI	GCNGC	6 cut(s)	348, 1145, 1410, 2069, 2364, 2512
GsaI	CCCAGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	4 cut(s)	251, 1245, 2244, 2638
HapII	CCGG	4 cut(s)	239, 273, 464, 2504
HhaI	GCGC	3 cut(s)	442, 794, 1205
Hin6I	GCGC	3 cut(s)	440, 792, 1203
HinP1I	GCGC	3 cut(s)	440, 792, 1203
HindIII	AAGCTT	1 cut(s)	2330
HinfI	GANTC	5 cut(s)	45, 81, 640, 1949, 2396
HpaII	CCGG	4 cut(s)	239, 273, 464, 2504
HphI	GGTGA	6 cut(s)	5, 52, 628, 889, 1486, 2462
Hpy166II	GTNNAC	3 cut(s)	690, 1494, 2126
Hpy188III	TCNNGA	4 cut(s)	758, 1313, 1578, 2273
Hpy8I	GTNNAC	3 cut(s)	690, 1494, 2126
HpyAV	CCTTC	4 cut(s)	35, 100, 1256, 2491
HpyCH4III	ACNGT	5 cut(s)	305, 385, 581, 1807, 1837
HpyCH4IV	ACGT	4 cut(s)	958, 1193, 1356, 2094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	800, 1153, 1211, 1406, 1829, 1882, 2360
HpyF3I	CTNAG	8 cut(s)	937, 945, 1208, 1758, 1977, 2048, 2261, 2318
HpySE526I	ACGT	4 cut(s)	958, 1193, 1356, 2094
HspAI	GCGC	3 cut(s)	440, 792, 1203
Ksp22I	TGATCA	1 cut(s)	1224
Kzo9I	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
LguI	GCTCTTC	1 cut(s)	2667
LmnI	GCTCC	9 cut(s)	221, 789, 1346, 1470, 1775, 2083, 2203, 2500, 2680
Lsp1109I	GCAGC	6 cut(s)	359, 1156, 1421, 2080, 2375, 2523
LweI	GCATC	8 cut(s)	445, 846, 1033, 1056, 1372, 1729, 1975, 2032
MaeI	CTAG	2 cut(s)	897, 2687
MaeII	ACGT	4 cut(s)	958, 1193, 1356, 2094
MaeIII	GTNAC	9 cut(s)	295, 575, 948, 1028, 1297, 1900, 1937, 1990, 2095
MalI	GATC	5 cut(s)	1226, 1285, 1856, 2253, 2388
MbiI	CCGCTC	1 cut(s)	1470
MboI	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
MfeI	CAATTG	2 cut(s)	2198, 2381
MflI	RGATCY	3 cut(s)	1283, 1854, 2386
MhlI	GDGCHC	4 cut(s)	232, 285, 1612, 2685
MlyI	GAGTC	5 cut(s)	39, 75, 634, 1943, 2390
MmeI	TCCRAC	2 cut(s)	1746, 1819
Mph1103I	ATGCAT	1 cut(s)	2545
MseI	TTAA	8 cut(s)	38, 849, 1059, 1269, 1511, 1538, 1572, 1965
MslI	CAYNNNNRTG	6 cut(s)	314, 683, 875, 957, 984, 2340
MspA1I	CMGCKG	1 cut(s)	2514
MspI	CCGG	4 cut(s)	239, 273, 464, 2504
MspR9I	CCNGG	5 cut(s)	239, 240, 274, 391, 2505
MunI	CAATTG	2 cut(s)	2198, 2381
Mva1269I	GAATGC	4 cut(s)	1402, 1531, 1702, 2005
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	929
MwoI	GCNNNNNNNGC	7 cut(s)	800, 1153, 1211, 1406, 1829, 1882, 2360
NciI	CCSGG	4 cut(s)	239, 240, 274, 2505
NcoI	CCATGG	1 cut(s)	1543
NdeI	CATATG	1 cut(s)	1798
NdeII	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
NheI	GCTAGC	1 cut(s)	896
NlaIV	GGNNCC	5 cut(s)	1482, 1609, 2085, 2388, 2502
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	575, 1028, 1900
NsbI	TGCGCA	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	2545
NspI	RCATGY	8 cut(s)	265, 715, 1018, 1321, 1945, 2543, 2700, 2723
PaeI	GCATGC	1 cut(s)	265
PciI	ACATGT	4 cut(s)	711, 1014, 1317, 2719
PciSI	GCTCTTC	1 cut(s)	2667
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 414, 1123
PctI	GAATGC	4 cut(s)	1402, 1531, 1702, 2005
PflMI	CCANNNNNTGG	1 cut(s)	1549
PfoI	TCCNGGA	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	349, 1146, 1411, 2070, 2365, 2513
PleI	GAGTC	5 cut(s)	39, 75, 634, 1943, 2390
PpsI	GAGTC	5 cut(s)	39, 75, 634, 1943, 2390
Ppu21I	YACGTR	2 cut(s)	1357, 2095
PscI	ACATGT	4 cut(s)	711, 1014, 1317, 2719
Psp124BI	GAGCTC	1 cut(s)	232
Psp1406I	AACGTT	1 cut(s)	1193
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	5 cut(s)	1482, 1609, 2085, 2388, 2502
PspPI	GGNCC	2 cut(s)	250, 1243
PstI	CTGCAG	1 cut(s)	1146
PsuI	RGATCY	3 cut(s)	1283, 1854, 2386
PvuII	CAGCTG	1 cut(s)	2514
RsaI	GTAC	8 cut(s)	506, 583, 932, 1000, 1625, 2156, 2346, 2538
RsaNI	GTAC	8 cut(s)	505, 582, 931, 999, 1624, 2155, 2345, 2537
RseI	CAYNNNNRTG	6 cut(s)	314, 683, 875, 957, 984, 2340
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	2667
SaqAI	TTAA	8 cut(s)	38, 849, 1059, 1269, 1511, 1538, 1572, 1965
SatI	GCNGC	6 cut(s)	348, 1145, 1410, 2069, 2364, 2512
Sau3AI	GATC	5 cut(s)	1224, 1283, 1854, 2251, 2386
Sau96I	GGNCC	2 cut(s)	250, 1243
SchI	GAGTC	5 cut(s)	39, 75, 634, 1943, 2390
ScrFI	CCNGG	5 cut(s)	239, 240, 274, 391, 2505
SduI	GDGCHC	4 cut(s)	232, 285, 1612, 2685
SfaNI	GCATC	8 cut(s)	445, 846, 1033, 1056, 1372, 1729, 1975, 2032
SfcI	CTRYAG	2 cut(s)	746, 1142
SmaI	CCCGGG	1 cut(s)	240
SmiMI	CAYNNNNRTG	6 cut(s)	314, 683, 875, 957, 984, 2340
SmlI	CTYRAG	2 cut(s)	1471, 2072
SmoI	CTYRAG	2 cut(s)	1471, 2072
SphI	GCATGC	1 cut(s)	265
SsiI	CCGC	9 cut(s)	259, 614, 659, 927, 1162, 1468, 1981, 2164, 2390
SspMI	CTAG	2 cut(s)	897, 2687
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	5 cut(s)	237, 238, 272, 389, 2503
StyI	CCWWGG	2 cut(s)	351, 1543
TaaI	ACNGT	5 cut(s)	305, 385, 581, 1807, 1837
TaiI	ACGT	4 cut(s)	961, 1196, 1359, 2097
TaqI	TCGA	6 cut(s)	279, 360, 675, 1064, 1117, 1314
TatI	WGTACW	4 cut(s)	1623, 2154, 2344, 2536
Tru1I	TTAA	8 cut(s)	38, 849, 1059, 1269, 1511, 1538, 1572, 1965
Tru9I	TTAA	8 cut(s)	38, 849, 1059, 1269, 1511, 1538, 1572, 1965
TscAI	CASTG	3 cut(s)	1725, 1812, 2265
TseFI	GTSAC	3 cut(s)	575, 1028, 1900
TseI	GCWGC	6 cut(s)	347, 1144, 1409, 2068, 2363, 2511
Tsp45I	GTSAC	3 cut(s)	575, 1028, 1900
TspDTI	ATGAA	9 cut(s)	378, 638, 968, 1200, 1604, 1893, 2324, 2507, 2547
TspGWI	ACGGA	1 cut(s)	277
TspMI	CCCGGG	1 cut(s)	238
TspRI	CASTG	3 cut(s)	1725, 1812, 2265
Van91I	CCANNNNNTGG	1 cut(s)	1549
XapI	RAATTY	7 cut(s)	181, 201, 487, 645, 775, 2052, 2648
XceI	RCATGY	8 cut(s)	265, 715, 1018, 1321, 1945, 2543, 2700, 2723
XmaI	CCCGGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	897, 2687
Zsp2I	ATGCAT	1 cut(s)	2545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.