FvH4_6g28390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005920
Physical Location & Seq
Forward (+)
21884214 .. 21885186
973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28390.t1

Sequence Viewer

Length: 381 bp
ATGAAGCGTAAATTACTTGCATGGTTGCTGTTGATGATCCTGTCTAGCTTGGCTATCACAAATGGCTCTTTCCAATTGGAACATTGTCAAGGTGATGTTGGCCTCTCAAGGCTGCAAGGACAAGAAACTATTCATGGTGTACCGGGCACAGTGAGACTGAATAGATCAGAAGAAGATGATGGAAGCGGAAGCAGCAAAGAACAAGGAGATTTATTGGTTGCTTCAGAAAAGGGACAAAAAGGGAAAACAGGAGTTTATGGTGGTGGAAATTCTTCTCATCGCCCGAAAAGTAGTGCAACACCCAGCCCTTATCTCATGGCCAAAACCATGTTGCACGTAATCTTCAGTTCGGTTCTGATTCATTCCTTCAAATTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.55

Weight (kDa)

9.42

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 2 cut(s) 207, 328
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 1 cut(s) 370
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 31
AoxI GGCC 2 cut(s) 100, 318
ApeKI GCWGC 2 cut(s) 112, 192
ApoI RAATTY 1 cut(s) 268
Asp700I GAANNNNTTC 2 cut(s) 129, 271
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 320
BbvI GCAGC 2 cut(s) 99, 204
BccI CCATC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 113, 193
BlsI GCNGC 2 cut(s) 114, 194
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 99, 204
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 102, 320
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 2 cut(s) 102, 320
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 36, 164
BspACI CCGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 102, 320
BspPI GGATC 1 cut(s) 31
BssMI GATC 2 cut(s) 36, 164
Bst4CI ACNGT 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 337
BstKTI GATC 2 cut(s) 39, 167
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 36, 164
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 99, 204
BsuRI GGCC 2 cut(s) 102, 320
BtgZI GCGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 156
Csp6I GTAC 1 cut(s) 140
CviAII CATG 4 cut(s) 21, 134, 316, 328
CviJI RGCY 7 cut(s) 48, 53, 66, 102, 112, 306, 320
CviKI_1 RGCY 7 cut(s) 48, 53, 66, 102, 112, 306, 320
CviQI GTAC 1 cut(s) 140
DpnI GATC 2 cut(s) 38, 166
DpnII GATC 2 cut(s) 36, 164
EaeI YGGCCR 1 cut(s) 318
Eco57I CTGAAG 2 cut(s) 207, 328
FaeI CATG 4 cut(s) 24, 137, 319, 331
FaiI YATR 5 cut(s) 22, 135, 258, 317, 329
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 20, 133, 315, 327
Fnu4HI GCNGC 2 cut(s) 113, 193
Fsp4HI GCNGC 2 cut(s) 113, 193
FspBI CTAG 1 cut(s) 45
GluI GCNGC 2 cut(s) 113, 193
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 102, 320
HapII CCGG 1 cut(s) 143
Hin1II CATG 4 cut(s) 24, 137, 319, 331
HinfI GANTC 1 cut(s) 358
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 169, 226, 357
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 20, 115, 296, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 24, 137, 319, 331
Kzo9I GATC 2 cut(s) 36, 164
LpnPI CCDG 4 cut(s) 53, 156, 234, 316
Lsp1109I GCAGC 2 cut(s) 99, 204
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 336
MalI GATC 2 cut(s) 38, 166
MboI GATC 2 cut(s) 36, 164
MboII GAAGA 4 cut(s) 182, 185, 264, 334
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 4 cut(s) 11, 74, 268, 371
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 2 cut(s) 129, 271
MscI TGGCCA 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 36, 164
NlaIII CATG 4 cut(s) 24, 137, 319, 331
PdmI GAANNNNTTC 2 cut(s) 129, 271
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 114, 194
Ppu21I YACGTR 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 302
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SatI GCNGC 2 cut(s) 113, 193
Sau3AI GATC 2 cut(s) 36, 164
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 149
SetI ASST 3 cut(s) 50, 94, 339
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 4 cut(s) 11, 74, 268, 371
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 339
TasI AATT 4 cut(s) 11, 74, 268, 371
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 1 cut(s) 156
TseI GCWGC 2 cut(s) 112, 192
TspDTI ATGAA 3 cut(s) 17, 122, 350
TspRI CASTG 1 cut(s) 156
XapI RAATTY 1 cut(s) 268
XmnI GAANNNNTTC 2 cut(s) 129, 271
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.