Rroxscaffold_2G00111870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
36700241 .. 36701229
989 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00111870.1

Sequence Viewer

Length: 357 bp
ATGAAGGGAAAATTACTCGCATGGTTGCTGTTGATGATCCTATCAAGCTTGGCTCTCACAAAGAGTAGTTCTTTCCATTTGGAACATCATCAAGGTGATATTAACCTCTCAAGGCCCATCGTACAAGAACAAGAAACTATTCATGGTGTACTTGGCACAATGAGACTGAATGGATCAGAGGAAGATTATGGACGAGGAAGCAACAAAGAACAAGAAGATTTGGTTGTTTCAGAAAAGGGTCAGAAAGGGAAAACAGGAGTTTATGGTGGTGCAAATGTTGCTCATCACCCCCGTCAACAGAAAAGTAGTGCAACACCCCCCGCCCTAATCTCATCGCAAATACCATGTTGCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.8

Weight (kDa)

7.86

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AclWI GGATC 2 cut(s) 31, 181
AfaI GTAC 2 cut(s) 123, 150
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 31, 181
AoxI GGCC 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 107, 278
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 354
BshFI GGCC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 36, 173
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 115
BspPI GGATC 2 cut(s) 31, 181
BssMI GATC 2 cut(s) 36, 173
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 354
BstKTI GATC 2 cut(s) 39, 176
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 36, 173
BstMWI GCNNNNNNNGC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 122, 149
CviAII CATG 3 cut(s) 21, 143, 345
CviJI RGCY 3 cut(s) 48, 53, 115
CviKI_1 RGCY 3 cut(s) 48, 53, 115
CviQI GTAC 2 cut(s) 122, 149
DpnI GATC 2 cut(s) 38, 175
DpnII GATC 2 cut(s) 36, 173
FaeI CATG 3 cut(s) 24, 146, 348
FaiI YATR 5 cut(s) 22, 144, 189, 264, 346
FatI CATG 3 cut(s) 20, 142, 344
FauI CCCGC 1 cut(s) 328
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 3 cut(s) 24, 146, 348
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 46
HphI GGTGA 2 cut(s) 107, 278
Hpy166II GTNNAC 2 cut(s) 149, 296
Hpy188I TCNGA 3 cut(s) 178, 232, 243
Hpy8I GTNNAC 2 cut(s) 149, 296
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 272, 311, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 24, 146, 348
Kzo9I GATC 2 cut(s) 36, 173
LpnPI CCDG 1 cut(s) 240
MaeII ACGT 1 cut(s) 353
MalI GATC 2 cut(s) 38, 175
MboI GATC 2 cut(s) 36, 173
MboII GAAGA 2 cut(s) 194, 227
MluCI AATT 1 cut(s) 11
MnlI CCTC 3 cut(s) 116, 172, 188
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 2 cut(s) 36, 173
NlaIII CATG 3 cut(s) 24, 146, 348
PdmI GAANNNNTTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 354
PspPI GGNCC 1 cut(s) 114
RsaI GTAC 2 cut(s) 123, 150
RsaNI GTAC 2 cut(s) 122, 149
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 2 cut(s) 36, 173
Sau96I GGNCC 1 cut(s) 114
SetI ASST 4 cut(s) 50, 97, 108, 356
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 321
TaiI ACGT 1 cut(s) 356
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 148
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 17, 131
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.