Rroxscaffold_2G00111860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005920
Physical Location & Seq
Reverse (-)
36683909 .. 36684921
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111860.1

Sequence Viewer

Length: 453 bp
ATGAAGGGAAAATTACTTGCATGGTTGCTGTTGATGATCCTATCAAGCTTCGCTCTCACAAACAGTTCTTTCCATTTGGAACACCATCAACGTGATGTTAATCTCTCAAGGTCCATCCTACGAGGACAAGAAACTATTCATGTTGGGCATACAATTGAAGGTGTACTTGGCACGGTGAGACTGAATGGATCAGAAAAAGATTATGAAAGAAGCAACAAAGAACAAGAAGATTTGGTTGTTTTAGAAAAGGGACAGAAAGGAAAAACAGGAGTTTATGGTGGTGCAACTGCTACTCATCGCCCCGGTCAAGAGAAGAGTAGTGCAACACCCGGCTCTTGTCTCACCGCAAATACCATGTTGCCCGAGCAGGACTTCAACATGCTTTATGTTTTACTGAGAGAACTTCCTCAGTGGGAGAGCTATCTGCAGAACTACTTGCATGCCACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

6.65

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 345
AclWI GGATC 2 cut(s) 31, 196
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 2 cut(s) 158, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 48, 420
AluI AGCT 2 cut(s) 48, 420
Alw26I GTCTC 2 cut(s) 172, 344
AlwI GGATC 2 cut(s) 31, 196
Ama87I CYCGRG 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 2 cut(s) 303, 330
AsuHPI GGTGA 2 cut(s) 187, 334
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 1 cut(s) 111
BccI CCATC 2 cut(s) 93, 122
BcnI CCSGG 2 cut(s) 303, 330
BcoDI GTCTC 2 cut(s) 172, 344
BfmI CTRYAG 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 303, 330
Bme18I GGWCC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 303, 330
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 2 cut(s) 303, 330
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 99
BseMII CTCAG 2 cut(s) 386, 422
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 303, 330
BslFI GGGAC 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 172, 344
BsmFI GGGAC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 2 cut(s) 36, 188
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 387, 421
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 2 cut(s) 31, 196
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 36, 188
Bst4CI ACNGT 2 cut(s) 65, 175
Bst6I CTCTTC 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 395, 408
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 39, 191
BstMAI GTCTC 2 cut(s) 172, 344
BstMBI GATC 2 cut(s) 36, 188
BstNSI RCATGY 2 cut(s) 382, 443
BstSCI CCNGG 2 cut(s) 301, 328
BstSFI CTRYAG 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 164
CviAII CATG 5 cut(s) 21, 140, 355, 379, 440
CviJI RGCY 3 cut(s) 48, 333, 420
CviKI_1 RGCY 3 cut(s) 48, 333, 420
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 2 cut(s) 395, 408
DpnI GATC 2 cut(s) 38, 190
DpnII GATC 2 cut(s) 36, 188
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 362
FaeI CATG 5 cut(s) 24, 143, 358, 382, 443
FaiI YATR 9 cut(s) 22, 141, 150, 204, 276, 356, 380, 387, 441
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 1 cut(s) 264
FatI CATG 5 cut(s) 20, 139, 354, 378, 439
FokI GGATG 1 cut(s) 101
HapII CCGG 2 cut(s) 303, 330
Hin1II CATG 5 cut(s) 24, 143, 358, 382, 443
HindIII AAGCTT 1 cut(s) 46
HpaII CCGG 2 cut(s) 303, 330
HphI GGTGA 2 cut(s) 187, 334
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 65, 175
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 20, 284, 323, 427, 439
HpyF3I CTNAG 2 cut(s) 395, 408
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 5 cut(s) 24, 143, 358, 382, 443
Kzo9I GATC 2 cut(s) 36, 188
LpnPI CCDG 4 cut(s) 252, 316, 343, 353
MaeII ACGT 1 cut(s) 91
MalI GATC 2 cut(s) 38, 190
MboI GATC 2 cut(s) 36, 188
MboII GAAGA 2 cut(s) 239, 325
MfeI CAATTG 1 cut(s) 153
MluCI AATT 2 cut(s) 11, 153
MnlI CCTC 2 cut(s) 116, 417
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 2 cut(s) 303, 330
MspR9I CCNGG 2 cut(s) 303, 330
MunI CAATTG 1 cut(s) 153
NciI CCSGG 2 cut(s) 303, 330
NdeII GATC 2 cut(s) 36, 188
NlaIII CATG 5 cut(s) 24, 143, 358, 382, 443
NspI RCATGY 2 cut(s) 382, 443
PaeI GCATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 429
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 2 cut(s) 36, 188
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 303, 330
SetI ASST 5 cut(s) 50, 94, 113, 163, 422
SfcI CTRYAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SphI GCATGC 1 cut(s) 443
Sse9I AATT 2 cut(s) 11, 153
SsiI CCGC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 301, 328
TaaI ACNGT 2 cut(s) 65, 175
TaiI ACGT 1 cut(s) 94
TasI AATT 2 cut(s) 11, 153
TatI WGTACW 1 cut(s) 163
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 17, 128, 219
TspRI CASTG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 111
XceI RCATGY 2 cut(s) 382, 443
XmnI GAANNNNTTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.