MD09G1226700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005920
Physical Location & Seq
Reverse (-)
28011928 .. 28012494
567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1226700.v1.1.491

Sequence Viewer

Length: 378 bp
ATGAAAGGAATGGGAATGAAATTACTTACATGCTTCTTATTCATCTTATGCACTCATGCCGTTTCAATCTTGGCCCGCACGAGCGTCTACGAGTTAGAACACGAACATGGTGTAGAAGGAAGAGAAATTCATGTGAGGCGTGCTGGTGTGGGTGGCTCAGTCAATGTGTATGGAGAAAAATACGAAACGGATGATTCAAGGAAGAACCAAAGAGGGAAAGGGGCAAATGGTGGTGCAGATGTAGGTCATCGACGCCCAACTGAGAAAAGTAGTGCAACACCAGTGCTCGCAAGGTCCCAGCAGCCTTTTCTCATCACTAAAACCATGCTGCAAGTAACCTCTGCTTTGATTCTTGTTCTTCCCTTTCACTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.73

Weight (kDa)

9.51

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 253
AgsI TTSAA 2 cut(s) 66, 198
Alw21I GWGCWC 1 cut(s) 288
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 301, 328
ApoI RAATTY 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 73, 294
AvaII GGWCC 1 cut(s) 294
BauI CACGAG 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 313, 315
BceAI ACGGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 302, 329
BlsI GCNGC 2 cut(s) 303, 330
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 73, 294
BmiI GGNNCC 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 171, 252
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 313, 315
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 288
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 170, 253
BspLI GGNNCC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 281
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 253
BstC8I GCNNGC 3 cut(s) 76, 141, 288
BstDEI CTNAG 2 cut(s) 157, 261
BstF5I GGATG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 313, 315
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 76, 141, 288
Cfr13I GGNCC 2 cut(s) 73, 294
CseI GACGC 2 cut(s) 73, 261
CviAII CATG 5 cut(s) 30, 56, 107, 131, 325
CviJI RGCY 3 cut(s) 74, 156, 304
CviKI_1 RGCY 3 cut(s) 74, 156, 304
DdeI CTNAG 2 cut(s) 157, 261
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 294
FaeI CATG 5 cut(s) 33, 59, 110, 134, 328
FaiI YATR 8 cut(s) 31, 49, 57, 108, 132, 171, 326, 376
FaqI GGGAC 1 cut(s) 280
FatI CATG 5 cut(s) 29, 55, 106, 130, 324
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 302, 329
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 302, 329
GluI GCNGC 2 cut(s) 302, 329
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 2 cut(s) 73, 261
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 5 cut(s) 33, 59, 110, 134, 328
HinfI GANTC 2 cut(s) 194, 349
Hpy166II GTNNAC 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 51, 236, 275, 331
HpyF3I CTNAG 2 cut(s) 157, 261
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 5 cut(s) 33, 59, 110, 134, 328
LpnPI CCDG 3 cut(s) 129, 294, 311
Lsp1109I GCAGC 2 cut(s) 313, 315
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 3 cut(s) 132, 214, 350
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 20, 126
MnlI CCTC 3 cut(s) 129, 206, 349
MslI CAYNNNNRTG 1 cut(s) 105
NlaIII CATG 5 cut(s) 33, 59, 110, 134, 328
NlaIV GGNNCC 1 cut(s) 296
NspI RCATGY 1 cut(s) 33
PfeI GAWTC 2 cut(s) 194, 349
PkrI GCNGC 2 cut(s) 303, 330
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 73, 294
PspPPI RGGWCCY 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 2 cut(s) 302, 329
Sau96I GGNCC 2 cut(s) 73, 294
SduI GDGCHC 1 cut(s) 288
SetI ASST 3 cut(s) 247, 296, 341
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 20, 126
SsiI CCGC 1 cut(s) 76
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 20, 126
TfiI GAWTC 2 cut(s) 194, 349
TscAI CASTG 1 cut(s) 288
TseI GCWGC 2 cut(s) 301, 328
TspDTI ATGAA 4 cut(s) 17, 31, 32, 119
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.