Rh2DG381000

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005920
Physical Location & Seq
Forward (+)
54881928 .. 54898275
16348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG381000.1

Sequence Viewer

Length: 1485 bp
ATGTGCCAGCTAGTGCACTTTTATGATTCTCTCAAGCTAGAAAGTTATGCCCAAAGCCCTATAGTCTGTCCCTGTCCTATCAAACCAAATCAACTAGCCACCCCTACCCCTACCCAGAACTTCGAGAAAATGAAGGGAAAATTACTCGCATGGTTGCTGTTGATGATCCTATCAAGCTTGGCTCTCACAAAGAGTAGTTCTTTCCATTTGGAACATCATCAAGGTGATATTAACCTCTCACGGCCCATCGTACAAGAACAAGAAACTATTCATGGTGTACTTGGCACAATGAGACTGAATGGATCAGAAGAAGATTATGGACGAGGAAGCAACAAAGAACAAGAAGATTTGGTTGTTTCAGAAAAGGGACAGAAAGGGAAAACAGGAGTTTATGGTGGTGCAAATGTTGCTCATCACCCCCGTCAACAGAAAGGTAGTGCAACACCCCGCCCTAATCTCATCGCAAAAACCATGTTGCACTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGAGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTTTGTAGTAGTTTTTGGAAGCAGGTACCAAATTCCATTCAAAATTCTAATTAAAGTTGGGCATACAATTGAAGGTGTACTTGGCACGGTGAGACTGAATGGATCAGAAAAAGATTATGAAAGAAGCAACAAAGAACAAGAAGATTTGGTTGTTTTAGAAAAGGGACAGAAAGGAAAAACAGGAGTTTATGGTGGTGCAACTGCTACTCATCGCCCCGGTCAAGAGAAGAGTAGTGCAACACCCGGCTCTTGTCTCACCGCAAATACCATGTTGCCCGTAATCTTCAGTTTGGTTTTTACTCTTTCCTTCAAATTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

494

Amino Acids

54.19

Weight (kDa)

6.52

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1176
Acc65I GGTACC 1 cut(s) 1188
AccB1I GGYRCC 2 cut(s) 640, 1188
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 2 cut(s) 448, 1422
AclWI GGATC 4 cut(s) 160, 310, 1010, 1273
AcsI RAATTY 4 cut(s) 909, 922, 1194, 1206
AcuI CTGAAG 4 cut(s) 936, 1092, 1115, 1432
AcyI GRCGYC 1 cut(s) 765
AfaI GTAC 6 cut(s) 252, 279, 868, 1033, 1190, 1242
AfiI CCNNNNNNNGG 2 cut(s) 527, 664
AgsI TTSAA 9 cut(s) 565, 691, 806, 818, 825, 958, 1204, 1235, 1474
AjnI CCWGG 4 cut(s) 554, 658, 883, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 1227, 1259
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 3 cut(s) 286, 1249, 1421
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 4 cut(s) 160, 310, 1010, 1273
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 2 cut(s) 242, 728
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 4 cut(s) 706, 809, 994, 1084
ApoI RAATTY 4 cut(s) 909, 922, 1194, 1206
Asp700I GAANNNNTTC 2 cut(s) 267, 801
Asp718I GGTACC 1 cut(s) 1188
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 2 cut(s) 1380, 1407
AsuHPI GGTGA 5 cut(s) 236, 407, 639, 1264, 1411
BaeGI GKGCMC 2 cut(s) 18, 643
BanI GGYRCC 2 cut(s) 640, 1188
BbsI GAAGAC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 4 cut(s) 718, 796, 1006, 1096
BccI CCATC 3 cut(s) 254, 652, 1109
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 4 cut(s) 556, 660, 885, 1020
BcnI CCSGG 2 cut(s) 1380, 1407
BcoDI GTCTC 3 cut(s) 286, 1249, 1421
BfaI CTAG 4 cut(s) 11, 38, 95, 1483
BfmI CTRYAG 2 cut(s) 60, 681
BfuAI ACCTGC 1 cut(s) 1176
BglII AGATCT 1 cut(s) 601
BisI GCNGC 4 cut(s) 707, 810, 995, 1085
BlsI GCNGC 4 cut(s) 708, 811, 996, 1086
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 6 cut(s) 556, 660, 885, 1020, 1380, 1407
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 3 cut(s) 642, 678, 1190
BmrFI CCNGG 6 cut(s) 556, 660, 885, 1020, 1380, 1407
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 981
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 965
BpuEI CTTGAG 2 cut(s) 17, 754
BpuMI CCSGG 2 cut(s) 1380, 1407
BsaAI YACGTR 1 cut(s) 986
BsaBI GATNNNNATC 1 cut(s) 933
BsaHI GRCGYC 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 658, 1378
BsaWI WCCGGW 2 cut(s) 739, 898
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 664
Bse1I ACTGG 3 cut(s) 637, 676, 1149
Bse3DI GCAATG 2 cut(s) 706, 787
Bse8I GATNNNNATC 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 4 cut(s) 556, 660, 885, 1020
BseDI CCNNGG 2 cut(s) 658, 1378
BseGI GGATG 1 cut(s) 748
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 2 cut(s) 527, 664
BseMI GCAATG 2 cut(s) 706, 787
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 3 cut(s) 637, 676, 1149
BseSI GKGCMC 2 cut(s) 18, 643
BseXI GCAGC 4 cut(s) 718, 796, 1006, 1096
BsgI GTGCAG 1 cut(s) 960
BshFI GGCC 2 cut(s) 244, 730
BshNI GGYRCC 2 cut(s) 640, 1188
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 740, 899, 1380, 1407
BslFI GGGAC 3 cut(s) 54, 381, 1341
BslI CCNNNNNNNGG 2 cut(s) 527, 664
BsmAI GTCTC 3 cut(s) 286, 1249, 1421
BsmFI GGGAC 3 cut(s) 54, 381, 1341
BsnI GGCC 2 cut(s) 244, 730
Bsp1286I GDGCHC 2 cut(s) 18, 643
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
BspACI CCGC 2 cut(s) 448, 1422
BspANI GGCC 2 cut(s) 244, 730
BspCNI CTCAG 1 cut(s) 731
BspEI TCCGGA 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 642, 678, 1190
BspMI ACCTGC 1 cut(s) 1176
BspPI GGATC 4 cut(s) 160, 310, 1010, 1273
BspT107I GGYRCC 2 cut(s) 640, 1188
BsrDI GCAATG 2 cut(s) 706, 787
BsrI ACTGG 3 cut(s) 637, 676, 1149
BssECI CCNNGG 2 cut(s) 658, 1378
BssMI GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
BssNI GRCGYC 1 cut(s) 765
Bst2UI CCWGG 4 cut(s) 556, 660, 885, 1020
Bst4CI ACNGT 5 cut(s) 587, 596, 866, 1157, 1252
Bst6I CTCTTC 2 cut(s) 1095, 1385
BstACI GRCGYC 1 cut(s) 765
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 986
BstC8I GCNNGC 2 cut(s) 8, 697
BstDEI CTNAG 2 cut(s) 718, 1107
BstF5I GGATG 1 cut(s) 748
BstKTI GATC 6 cut(s) 168, 305, 604, 937, 1018, 1268
BstMAI GTCTC 3 cut(s) 286, 1249, 1421
BstMBI GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
BstMWI GCNNNNNNNGC 2 cut(s) 407, 818
BstNI CCWGG 4 cut(s) 556, 660, 885, 1020
BstSCI CCNGG 6 cut(s) 554, 658, 883, 1018, 1378, 1405
BstSFI CTRYAG 2 cut(s) 60, 681
BstSLI GKGCMC 2 cut(s) 18, 643
BstV1I GCAGC 4 cut(s) 718, 796, 1006, 1096
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 2 cut(s) 601, 1015
BstYI RGATCY 2 cut(s) 601, 1015
BsuRI GGCC 2 cut(s) 244, 730
BtgZI GCGATG 2 cut(s) 445, 1358
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 1162
BveI ACCTGC 1 cut(s) 1176
Cac8I GCNNGC 2 cut(s) 8, 697
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 773
Csp6I GTAC 6 cut(s) 251, 278, 867, 1032, 1189, 1241
CviAII CATG 5 cut(s) 150, 272, 472, 1035, 1432
CviQI GTAC 6 cut(s) 251, 278, 867, 1032, 1189, 1241
DdeI CTNAG 2 cut(s) 718, 1107
DpnI GATC 6 cut(s) 167, 304, 603, 936, 1017, 1267
DpnII GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
Eam1104I CTCTTC 2 cut(s) 1095, 1385
EarI CTCTTC 2 cut(s) 1095, 1385
Eco147I AGGCCT 1 cut(s) 730
Eco57I CTGAAG 4 cut(s) 936, 1092, 1115, 1432
EcoRII CCWGG 4 cut(s) 554, 658, 883, 1018
FaeI CATG 5 cut(s) 153, 275, 475, 1038, 1435
FalI AAGNNNNNCTT 2 cut(s) 1227, 1259
FaqI GGGAC 3 cut(s) 54, 381, 1341
FatI CATG 5 cut(s) 149, 271, 471, 1034, 1431
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 4 cut(s) 707, 810, 995, 1085
FokI GGATG 1 cut(s) 755
Fsp4HI GCNGC 4 cut(s) 707, 810, 995, 1085
FspBI CTAG 4 cut(s) 11, 38, 95, 1483
GluI GCNGC 4 cut(s) 707, 810, 995, 1085
HaeIII GGCC 2 cut(s) 244, 730
HapII CCGG 4 cut(s) 740, 899, 1380, 1407
HgaI GACGC 1 cut(s) 773
Hin1I GRCGYC 1 cut(s) 765
Hin1II CATG 5 cut(s) 153, 275, 475, 1038, 1435
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HindIII AAGCTT 2 cut(s) 175, 819
HinfI GANTC 5 cut(s) 26, 508, 802, 1009, 1103
HpaII CCGG 4 cut(s) 740, 899, 1380, 1407
HphI GGTGA 5 cut(s) 236, 407, 639, 1264, 1411
Hpy166II GTNNAC 4 cut(s) 16, 278, 425, 1241
Hpy188I TCNGA 7 cut(s) 307, 361, 507, 615, 852, 928, 1270
Hpy188III TCNNGA 7 cut(s) 124, 720, 740, 771, 914, 1013, 1385
Hpy8I GTNNAC 4 cut(s) 16, 278, 425, 1241
HpyAV CCTTC 6 cut(s) 127, 579, 660, 1041, 1229, 1480
HpyCH4III ACNGT 5 cut(s) 587, 596, 866, 1157, 1252
HpyCH4IV ACGT 1 cut(s) 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 818
HpyF3I CTNAG 2 cut(s) 718, 1107
HpySE526I ACGT 1 cut(s) 985
Hsp92I GRCGYC 1 cut(s) 765
Hsp92II CATG 5 cut(s) 153, 275, 475, 1038, 1435
Kpn2I TCCGGA 1 cut(s) 739
KpnI GGTACC 1 cut(s) 1192
Kzo9I GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
LmnI GCTCC 2 cut(s) 523, 1067
Lsp1109I GCAGC 4 cut(s) 718, 796, 1006, 1096
LweI GCATC 1 cut(s) 981
MaeI CTAG 4 cut(s) 11, 38, 95, 1483
MaeII ACGT 1 cut(s) 985
MaeIII GTNAC 2 cut(s) 590, 667
MalI GATC 6 cut(s) 167, 304, 603, 936, 1017, 1267
MboI GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
MfeI CAATTG 1 cut(s) 1230
MflI RGATCY 2 cut(s) 601, 1015
MhlI GDGCHC 2 cut(s) 18, 643
MlyI GAGTC 1 cut(s) 1112
MnlI CCTC 7 cut(s) 245, 317, 501, 658, 720, 778, 784
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 2 cut(s) 267, 801
MseI TTAA 3 cut(s) 231, 629, 1215
MslI CAYNNNNRTG 3 cut(s) 21, 222, 1158
MspA1I CMGCKG 1 cut(s) 997
MspI CCGG 4 cut(s) 740, 899, 1380, 1407
MspR9I CCNGG 6 cut(s) 556, 660, 885, 1020, 1380, 1407
MunI CAATTG 1 cut(s) 1230
MvaI CCWGG 4 cut(s) 556, 660, 885, 1020
MwoI GCNNNNNNNGC 2 cut(s) 407, 818
NciI CCSGG 2 cut(s) 1380, 1407
NdeII GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
NlaIII CATG 5 cut(s) 153, 275, 475, 1038, 1435
NlaIV GGNNCC 3 cut(s) 642, 678, 1190
PceI AGGCCT 1 cut(s) 730
PdmI GAANNNNTTC 2 cut(s) 267, 801
PfeI GAWTC 4 cut(s) 26, 508, 802, 1009
PfoI TCCNGGA 1 cut(s) 1018
PkrI GCNGC 4 cut(s) 708, 811, 996, 1086
PleI GAGTC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 1111
Ppu21I YACGTR 1 cut(s) 986
Psp6I CCWGG 4 cut(s) 554, 658, 883, 1018
PspGI CCWGG 4 cut(s) 554, 658, 883, 1018
PspN4I GGNNCC 3 cut(s) 642, 678, 1190
PspPI GGNCC 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PsuI RGATCY 2 cut(s) 601, 1015
PvuII CAGCTG 1 cut(s) 997
RsaI GTAC 6 cut(s) 252, 279, 868, 1033, 1190, 1242
RsaNI GTAC 6 cut(s) 251, 278, 867, 1032, 1189, 1241
RseI CAYNNNNRTG 3 cut(s) 21, 222, 1158
SaqAI TTAA 3 cut(s) 231, 629, 1215
SatI GCNGC 4 cut(s) 707, 810, 995, 1085
Sau3AI GATC 6 cut(s) 165, 302, 601, 934, 1015, 1265
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 6 cut(s) 556, 660, 885, 1020, 1380, 1407
SduI GDGCHC 2 cut(s) 18, 643
SfaNI GCATC 1 cut(s) 981
SfcI CTRYAG 2 cut(s) 60, 681
SmiMI CAYNNNNRTG 3 cut(s) 21, 222, 1158
SmlI CTYRAG 2 cut(s) 32, 769
SmoI CTYRAG 2 cut(s) 32, 769
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 2 cut(s) 448, 1422
SspMI CTAG 4 cut(s) 11, 38, 95, 1483
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 6 cut(s) 554, 658, 883, 1018, 1378, 1405
TaaI ACNGT 5 cut(s) 587, 596, 866, 1157, 1252
TaiI ACGT 1 cut(s) 988
TaqI TCGA 1 cut(s) 123
TatI WGTACW 4 cut(s) 277, 866, 1031, 1240
TfiI GAWTC 4 cut(s) 26, 508, 802, 1009
Tru1I TTAA 3 cut(s) 231, 629, 1215
Tru9I TTAA 3 cut(s) 231, 629, 1215
TscAI CASTG 1 cut(s) 1162
TseI GCWGC 4 cut(s) 706, 809, 994, 1084
TspDTI ATGAA 4 cut(s) 146, 260, 561, 1296
TspRI CASTG 1 cut(s) 1162
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 4 cut(s) 909, 922, 1194, 1206
XmnI GAANNNNTTC 2 cut(s) 267, 801
XspI CTAG 4 cut(s) 11, 38, 95, 1483
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.