Prupe.3G102000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005920
Physical Location & Seq
Reverse (-)
7923610 .. 7925116
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G102000.2

Sequence Viewer

Length: 474 bp
ATGAAGGGAATGAAATTACTTGCATGGTTTTTGTTCATCTCATGCTCTCATGCCCTATCAAGCTTGGCTCTCAAAGGCTTCTTCAAGTTAGAATATGAACAAAAAGGTGCTAAACTCTCAAGGCCTATTGGACAAGGACAAGACTTTCATGGTGTGGACGGCGCGGTCAAACTGTGTGGAGAAAAACATGAAATGGATGAGCCAAGGAAGATCCAAAAAGGGAAAGGGGGAGTTTATGGGGGTGCAAATATTGCTCATAAGCCACGCCCAACTGAGAGAAGTAGTGCACCATCATTGCTAGCAAAGCCCCAACGGCTTTTTCTCTTCACTAAAACCAGAATAATGGGCAATTATAAACAGGACTTCAACACATTTCCTTGTTGCAGAATTATCATCTTCCACCATTTGGAAAGAAATGAGCTTCTCAAAGATAAACCAAAGAATCAAAAAGATGTTGGAGGATCAATAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.62

Weight (kDa)

9.8

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AasI GACNNNNNNGTC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 1 cut(s) 164
AciI CCGC 1 cut(s) 164
AclWI GGATC 2 cut(s) 205, 469
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 2 cut(s) 85, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 2 cut(s) 63, 421
AluI AGCT 2 cut(s) 63, 421
Alw21I GWGCWC 1 cut(s) 289
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 2 cut(s) 205, 469
AoxI GGCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BccI CCATC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 175, 329
BfaI CTAG 1 cut(s) 299
BglI GCCNNNNNGGC 1 cut(s) 313
BmtI GCTAGC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse3DI GCAATG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 406
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 210, 461
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 164
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 205, 469
BsrDI GCAATG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 210, 461
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 213, 464
BstMBI GATC 2 cut(s) 210, 461
BstMWI GCNNNNNNNGC 3 cut(s) 251, 304, 313
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 5 cut(s) 24, 42, 50, 149, 188
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 212, 463
DpnII GATC 2 cut(s) 210, 461
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 5 cut(s) 27, 45, 53, 152, 191
FaiI YATR 9 cut(s) 25, 43, 51, 96, 150, 189, 237, 258, 354
FatI CATG 5 cut(s) 23, 41, 49, 148, 187
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 299
GlaI GCGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 124
HhaI GCGC 1 cut(s) 164
Hin1II CATG 5 cut(s) 27, 45, 53, 152, 191
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 157, 287
Hpy8I GTNNAC 2 cut(s) 157, 287
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 23, 245, 287, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 304, 313
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 5 cut(s) 27, 45, 53, 152, 191
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 210, 461
LpnPI CCDG 2 cut(s) 344, 349
MaeI CTAG 1 cut(s) 299
MalI GATC 2 cut(s) 212, 463
MboI GATC 2 cut(s) 210, 461
MboII GAAGA 4 cut(s) 73, 220, 316, 388
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 3 cut(s) 14, 349, 387
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 1 cut(s) 452
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 251, 304, 313
NdeII GATC 2 cut(s) 210, 461
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 27, 45, 53, 152, 191
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 442
PflMI CCANNNNNTGG 1 cut(s) 406
PsiI TTATAA 1 cut(s) 354
PsuI RGATCY 1 cut(s) 210
Sau3AI GATC 2 cut(s) 210, 461
SduI GDGCHC 1 cut(s) 289
SetI ASST 3 cut(s) 65, 109, 423
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 3 cut(s) 14, 349, 387
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 299
StuI AGGCCT 1 cut(s) 124
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 174
TasI AATT 3 cut(s) 14, 349, 387
TfiI GAWTC 1 cut(s) 442
TspDTI ATGAA 6 cut(s) 17, 25, 26, 111, 137, 204
Van91I CCANNNNNTGG 1 cut(s) 406
VneI GTGCAC 1 cut(s) 285
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.