pycom09g14570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005920
Physical Location & Seq
Reverse (-)
14284450 .. 14284905
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14570.2

Sequence Viewer

Length: 378 bp
ATGAAAGGAATGGGAATGAAATTACTTACATGCTTCTTATTCATCTTATGCACTCATGCCCTTTCAAGCTTGGCCCACACGAGCGTCTACGAGTTAGAACACAAACATGGTGTACAAGGAAGAGAAATTCATGTGAGGCGTGCTGGTGTGGGTGGCTCAGTCAGTCTGTGTGGAGAAAAATATGGAACGGATGATTCAAGGAAGAACCAAAGAGGGAAAGGGGCAAATGGCAGTGCAGATGTAGGTCATCGACGCCCAACTGAGAAAAGTAGTGCAACACCGGTACTCGCAAGGTCCCAGCAGCCTTTTCTCATCACTAAAACCATGCTGCAAGTAACCTCTGCTTTGATTCTTGTTCTTCCCTTTCATTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

9.88

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 2 cut(s) 114, 285
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 2 cut(s) 66, 198
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 301, 328
ApoI RAATTY 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 73, 294
AvaII GGWCC 1 cut(s) 294
BauI CACGAG 1 cut(s) 79
BbvI GCAGC 2 cut(s) 313, 315
BisI GCNGC 2 cut(s) 302, 329
BlsI GCNGC 2 cut(s) 303, 330
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 73, 294
BmiI GGNNCC 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 280
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 171, 252
BseXI GCAGC 2 cut(s) 313, 315
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 280
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 112
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 170, 253
BspLI GGNNCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 157, 261
BstF5I GGATG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 313, 315
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 73, 294
CseI GACGC 2 cut(s) 73, 261
Csp6I GTAC 2 cut(s) 113, 284
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 5 cut(s) 30, 56, 107, 131, 325
CviJI RGCY 4 cut(s) 69, 74, 156, 304
CviKI_1 RGCY 4 cut(s) 69, 74, 156, 304
CviQI GTAC 2 cut(s) 113, 284
DdeI CTNAG 2 cut(s) 157, 261
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 294
FaeI CATG 5 cut(s) 33, 59, 110, 134, 328
FaiI YATR 8 cut(s) 31, 49, 57, 108, 132, 183, 326, 376
FaqI GGGAC 1 cut(s) 280
FatI CATG 5 cut(s) 29, 55, 106, 130, 324
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 302, 329
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 302, 329
GluI GCNGC 2 cut(s) 302, 329
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 281
HgaI GACGC 2 cut(s) 73, 261
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 5 cut(s) 33, 59, 110, 134, 328
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 2 cut(s) 194, 349
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 88, 113
Hpy8I GTNNAC 2 cut(s) 88, 113
Hpy99I CGWCG 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 51, 236, 275, 331
HpyF3I CTNAG 2 cut(s) 157, 261
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 5 cut(s) 33, 59, 110, 134, 328
LpnPI CCDG 3 cut(s) 129, 294, 311
Lsp1109I GCAGC 2 cut(s) 313, 315
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 3 cut(s) 132, 214, 350
MluCI AATT 2 cut(s) 20, 126
MnlI CCTC 3 cut(s) 129, 206, 349
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 281
NlaIII CATG 5 cut(s) 33, 59, 110, 134, 328
NlaIV GGNNCC 1 cut(s) 296
NspI RCATGY 1 cut(s) 33
PfeI GAWTC 2 cut(s) 194, 349
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 2 cut(s) 303, 330
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 73, 294
PspPPI RGGWCCY 1 cut(s) 294
RsaI GTAC 2 cut(s) 114, 285
RsaNI GTAC 2 cut(s) 113, 284
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 2 cut(s) 302, 329
Sau96I GGNCC 2 cut(s) 73, 294
SetI ASST 4 cut(s) 71, 247, 296, 341
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 20, 126
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 20, 126
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 2 cut(s) 194, 349
TscAI CASTG 1 cut(s) 238
TseI GCWGC 2 cut(s) 301, 328
TspDTI ATGAA 5 cut(s) 17, 31, 32, 119, 356
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.