Rh2AG357900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
52941656 .. 52942881
1226 bp
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UTR
Exon/CDS
Intron
Rh2AG357900.1

Sequence Viewer

Length: 390 bp
ATGAAGGGAAAATTACTTGCATGGTTGCTGTTGATGATCCTATCAAGCTTCGCTCTCACAAACAGTTCTTTCCATTTGGAACACCATCAACGTGATATTAATCTCTCAAGGCCCATCCTACGAGGACAAGAAACTATTCATGGTGTACTTGGCACGGTGAGACTGAATGGATCAGAAAAAGATTATGAAAGAAGCAACAAAGAACAAGAAGATTTGGTTGTTTTAGAAAAGGGACAGAAAGGAAAAACAGGAGTTTATGGTGGTGCAACTGCTACTCATCGCCCCGGTCTAGAGAAGAGTAGTGCAACACCCGGCTCTTGTCTCACCGCAAATACCATGTTGCCCGTAATCTTCAGTTTGGTTTTTACTCTTTCCTTCAAATTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.18

Weight (kDa)

9.41

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 327
AclWI GGATC 2 cut(s) 31, 178
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 1 cut(s) 147
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 154, 326
AlwI GGATC 2 cut(s) 31, 178
AoxI GGCC 1 cut(s) 110
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 2 cut(s) 285, 312
AsuHPI GGTGA 2 cut(s) 169, 316
BccI CCATC 2 cut(s) 93, 122
BcnI CCSGG 2 cut(s) 285, 312
BcoDI GTCTC 2 cut(s) 154, 326
BfaI CTAG 2 cut(s) 290, 388
Bme1390I CCNGG 2 cut(s) 285, 312
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 285, 312
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 2 cut(s) 285, 312
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 99
BshFI GGCC 1 cut(s) 112
BsiSI CCGG 2 cut(s) 285, 312
BslFI GGGAC 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 154, 326
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 36, 170
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 112
BspPI GGATC 2 cut(s) 31, 178
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 36, 170
Bst4CI ACNGT 2 cut(s) 65, 157
Bst6I CTCTTC 1 cut(s) 290
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 39, 173
BstMAI GTCTC 2 cut(s) 154, 326
BstMBI GATC 2 cut(s) 36, 170
BstSCI CCNGG 2 cut(s) 283, 310
BsuRI GGCC 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 21, 140, 337
CviJI RGCY 3 cut(s) 48, 112, 315
CviKI_1 RGCY 3 cut(s) 48, 112, 315
CviQI GTAC 1 cut(s) 146
DpnI GATC 2 cut(s) 38, 172
DpnII GATC 2 cut(s) 36, 170
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 337
FaeI CATG 3 cut(s) 24, 143, 340
FaiI YATR 5 cut(s) 22, 141, 186, 258, 338
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 20, 139, 336
FokI GGATG 1 cut(s) 101
FspBI CTAG 2 cut(s) 290, 388
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 285, 312
Hin1II CATG 3 cut(s) 24, 143, 340
HindIII AAGCTT 1 cut(s) 46
HpaII CCGG 2 cut(s) 285, 312
HphI GGTGA 2 cut(s) 169, 316
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 2 cut(s) 65, 157
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 20, 266, 305
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 24, 143, 340
Kzo9I GATC 2 cut(s) 36, 170
LpnPI CCDG 3 cut(s) 234, 298, 325
MaeI CTAG 2 cut(s) 290, 388
MaeII ACGT 1 cut(s) 91
MalI GATC 2 cut(s) 38, 172
MboI GATC 2 cut(s) 36, 170
MboII GAAGA 3 cut(s) 221, 307, 343
MluCI AATT 2 cut(s) 11, 380
MnlI CCTC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 2 cut(s) 285, 312
MspR9I CCNGG 2 cut(s) 285, 312
NciI CCSGG 2 cut(s) 285, 312
NdeII GATC 2 cut(s) 36, 170
NlaIII CATG 3 cut(s) 24, 143, 340
PdmI GAANNNNTTC 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 99
PspPI GGNCC 1 cut(s) 111
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 2 cut(s) 36, 170
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 285, 312
SetI ASST 2 cut(s) 50, 94
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 11, 380
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 290, 388
StyD4I CCNGG 2 cut(s) 283, 310
TaaI ACNGT 2 cut(s) 65, 157
TaiI ACGT 1 cut(s) 94
TasI AATT 2 cut(s) 11, 380
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 17, 128, 201
VspI ATTAAT 1 cut(s) 99
XbaI TCTAGA 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 290, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.