Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Forward (+)

21984990 .. 21986243

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATATATGATGGTTGGAACTTCCGAGTGTACAAAGGAGTTTATGGAGGTCGTGAAATTTTGGTGAAAATATTCGGAGAAAGATCAAACTACAGGAGTGGTGAACTTCTAACTGCTACTGAACTTGCAATTTCTTCAAACATGAGCAACCACAAGAACGTTTTGAAGCTCTTGGGATGTTGTCTTGAGACAGAATTGGCCACTCTAGTTTTTGAATTCCCAGCAAAAGGTAATCTCCCTCATCACATTTATGGTGACAATGCACAATCATTGCCATGGAAGATCAAGTTGAAGATCGCAATTGAAATAGCAGATGCAGTTTCATATCTTCACCACGGCTCTTCCAAGGTGTTTATTCATAGGAACCTAAGAACTGAAAACATCTTCTTGGACCAGGACTGGGTTGCCAAGCTGTCTGATTTCCAAGTGTCACTACCAATTCCTTTGGACGAAGACCATGTAGTTTCGGAATATCTCGGATTCTTAGGGACATTAGCTCCAGAAGTAATGATCTGTAATCATTATACAGAAAAACGTGATGTCTTTAACTTGGGGATGATAATGTGCGAAATGTTGACAGGAAAGAAAATGTATGAGATACAAAGACTCCGGTCTTCTGGGGATTCAAAGGAACTGGAAAGCATTATGGAGAGAAATGTAGTGCATGAGAGCAACATGAAGCAGGTGACAGAATGCAGCAAGCTCGCAGTAAGGTGTCTCGACTCAGATCCTGATGCAAGACCAACGACGCAAGAAGTCTCACAGACACTCAGATCGATCAGAACGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.99

Weight (kDa)

6.15

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 255	4.9e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 257	1.5e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AclI	AACGTT	2 cut(s)	159, 785
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	57, 215
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	227, 400
AgsI	TTSAA	6 cut(s)	138, 166, 215, 292, 305, 627
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	169, 412, 497, 703
AluI	AGCT	4 cut(s)	169, 412, 497, 703
Alw26I	GTCTC	3 cut(s)	182, 722, 763
AlwI	GGATC	1 cut(s)	722
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	696
ApoI	RAATTY	2 cut(s)	57, 215
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	5 cut(s)	76, 113, 266, 323, 697
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	459, 606
BbvI	GCAGC	1 cut(s)	708
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	182, 722, 763
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	1 cut(s)	697
BlsI	GCNGC	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	304, 724
BmuI	ACTGGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	459, 606
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	275, 334, 345
BsaWI	WCCGGW	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	481, 511, 591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 400
Bse1I	ACTGG	2 cut(s)	404, 639
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	395
BseCI	ATCGAT	1 cut(s)	776
BseDI	CCNNGG	3 cut(s)	275, 334, 345
BseGI	GGATG	2 cut(s)	182, 561
BseLI	CCNNNNNNNGG	2 cut(s)	227, 400
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	738, 784
BseNI	ACTGG	2 cut(s)	404, 639
BseXI	GCAGC	1 cut(s)	708
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	227, 400
BsmAI	GTCTC	3 cut(s)	182, 722, 763
BsmFI	GGGAC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
Bsp19I	CCATGG	1 cut(s)	275
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	737, 783
BspDI	ATCGAT	1 cut(s)	776
BspLI	GGNNCC	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	404, 639
BssECI	CCNNGG	3 cut(s)	275, 334, 345
BssMI	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
BssT1I	CCWWGG	2 cut(s)	275, 345
Bst2UI	CCWGG	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	701, 705
BstDEI	CTNAG	4 cut(s)	368, 484, 724, 770
BstDSI	CCRYGG	2 cut(s)	275, 334
BstF5I	GGATG	2 cut(s)	182, 561
BstKTI	GATC	7 cut(s)	86, 285, 297, 513, 730, 776, 780
BstMAI	GTCTC	3 cut(s)	182, 722, 763
BstMBI	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
BstNI	CCWGG	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	708
BstV2I	GAAGAC	2 cut(s)	459, 606
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	776
BtgI	CCRYGG	2 cut(s)	275, 334
BtsCI	GGATG	2 cut(s)	182, 561
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	701, 705
CaiI	CAGNNNCTG	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	391
ClaI	ATCGAT	1 cut(s)	776
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	5 cut(s)	142, 276, 458, 665, 676
CviJI	RGCY	6 cut(s)	169, 200, 339, 412, 497, 703
CviKI_1	RGCY	6 cut(s)	169, 200, 339, 412, 497, 703
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	4 cut(s)	368, 484, 724, 770
DpnI	GATC	7 cut(s)	85, 284, 296, 512, 729, 775, 779
DpnII	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	275, 345
Eco47I	GGWCC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	275, 345
ErhI	CCWWGG	2 cut(s)	275, 345
FaeI	CATG	5 cut(s)	145, 279, 461, 668, 679
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	5 cut(s)	141, 275, 457, 664, 675
Fnu4HI	GCNGC	1 cut(s)	697
FokI	GGATG	2 cut(s)	189, 568
Fsp4HI	GCNGC	1 cut(s)	697
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	697
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	1 cut(s)	757
Hin1II	CATG	5 cut(s)	145, 279, 461, 668, 679
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	480, 606, 623, 722
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	5 cut(s)	76, 113, 266, 323, 697
Hpy166II	GTNNAC	3 cut(s)	31, 104, 576
Hpy188I	TCNGA	8 cut(s)	26, 77, 418, 469, 479, 727, 773, 782
Hpy188III	TCNNGA	5 cut(s)	53, 185, 500, 719, 731
Hpy8I	GTNNAC	3 cut(s)	31, 104, 576
Hpy99I	CGWCG	1 cut(s)	751
HpyCH4IV	ACGT	3 cut(s)	159, 535, 785
HpyCH4V	TGCA	6 cut(s)	128, 263, 317, 664, 696, 737
HpyF3I	CTNAG	4 cut(s)	368, 484, 724, 770
HpySE526I	ACGT	3 cut(s)	159, 535, 785
Hsp92II	CATG	5 cut(s)	145, 279, 461, 668, 679
Kzo9I	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
LguI	GCTCTTC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	1 cut(s)	708
LweI	GCATC	2 cut(s)	304, 724
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	3 cut(s)	159, 535, 785
MaeIII	GTNAC	3 cut(s)	254, 429, 685
MalI	GATC	7 cut(s)	85, 284, 296, 512, 729, 775, 779
MboI	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
MboII	GAAGA	8 cut(s)	126, 292, 304, 320, 333, 376, 464, 606
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	6 cut(s)	57, 129, 194, 215, 300, 438
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	600, 716
MnlI	CCTC	2 cut(s)	41, 249
Mox20I	TGGCCA	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	2 cut(s)	249, 274
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
NlaIII	CATG	5 cut(s)	145, 279, 461, 668, 679
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	3 cut(s)	254, 429, 685
PaqCI	CACCTGC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	480, 623
PkrI	GCNGC	1 cut(s)	698
PleI	GAGTC	2 cut(s)	600, 716
PpsI	GAGTC	2 cut(s)	600, 716
PshAI	GACNNNNGTC	1 cut(s)	610
Psp1406I	AACGTT	2 cut(s)	159, 785
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	249, 274
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	1 cut(s)	697
Sau3AI	GATC	7 cut(s)	83, 282, 294, 510, 727, 773, 777
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	2 cut(s)	600, 716
ScrFI	CCNGG	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	304, 724
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	249, 274
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	57, 129, 194, 215, 300, 438
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	275, 345
TaiI	ACGT	3 cut(s)	162, 538, 788
TaqI	TCGA	2 cut(s)	720, 776
TasI	AATT	6 cut(s)	57, 129, 194, 215, 300, 438
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	480, 623
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseFI	GTSAC	3 cut(s)	254, 429, 685
TseI	GCWGC	1 cut(s)	696
Tsp45I	GTSAC	3 cut(s)	254, 429, 685
TspDTI	ATGAA	3 cut(s)	312, 347, 692
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	57, 215
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.