Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023498.1

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Reverse (-)

11007 .. 11384

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023498.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgttagaacagctcatacattctttcaatgggaattgcaatccgatttggctctattctgtaaaagagatcgacaaggcaacaagcaatttcaactgggatagaatcacacataagggttccaaccttggactgtacaaagggtttcgtgaagatcatgaaattttggtgaagaagtttgaagaagactcgactggaatcatggatgatcctctagatttgattactaatgaagttgcaattgcctcaaacatgagcaagcacaataatgttttgaagctcttaggctgctgcctcgagactgagttgcccaggggtggacctgtcattcggtctgacggggtccggacccccctcaactttttggcagatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

14.1

Weight (kDa)

5.28

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	345
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	28, 94, 182, 277
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	2 cut(s)	13, 280
AluI	AGCT	2 cut(s)	13, 280
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	288, 291
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AspS9I	GGNCC	3 cut(s)	320, 343, 348
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	3 cut(s)	320, 343, 348
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	275, 278
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	289, 292
BlsI	GCNGC	2 cut(s)	290, 293
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	3 cut(s)	320, 343, 348
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	3 cut(s)	320, 343, 348
BmiI	GGNNCC	3 cut(s)	121, 344, 350
BmrFI	CCNGG	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	127, 311, 312
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	101, 199
BseAI	TCCGGA	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	127, 311, 312
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	101, 199
BseXI	GCAGC	2 cut(s)	275, 278
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	69, 154, 208
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	121, 344, 350
BspPI	GGATC	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	101, 199
BssECI	CCNNGG	3 cut(s)	127, 311, 312
BssMI	GATC	3 cut(s)	69, 154, 208
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	283, 303
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	72, 157, 211
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	69, 154, 208
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	275, 278
BstV2I	GAAGAC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	260
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	320, 343, 348
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	158, 202, 253
CviJI	RGCY	4 cut(s)	13, 52, 280, 288
CviKI_1	RGCY	4 cut(s)	13, 52, 280, 288
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	283, 303
DpnI	GATC	3 cut(s)	71, 156, 210
DpnII	GATC	3 cut(s)	69, 154, 208
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	320, 343, 348
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	161, 205, 256
FaiI	YATR	7 cut(s)	17, 114, 159, 203, 254, 374, 376
FatI	CATG	3 cut(s)	157, 201, 252
Fnu4HI	GCNGC	2 cut(s)	289, 292
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	289, 292
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	2 cut(s)	289, 292
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	3 cut(s)	161, 205, 256
HinfI	GANTC	3 cut(s)	105, 188, 198
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	45, 337
Hpy188III	TCNNGA	5 cut(s)	149, 158, 215, 298, 346
Hpy8I	GTNNAC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	39, 239
HpyF3I	CTNAG	2 cut(s)	283, 303
Hsp92II	CATG	3 cut(s)	161, 205, 256
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	69, 154, 208
LpnPI	CCDG	6 cut(s)	82, 180, 298, 325, 336, 359
Lsp1109I	GCAGC	2 cut(s)	275, 278
MaeI	CTAG	1 cut(s)	215
MalI	GATC	3 cut(s)	71, 156, 210
MboI	GATC	3 cut(s)	69, 154, 208
MboII	GAAGA	4 cut(s)	164, 184, 194, 197
MfeI	CAATTG	1 cut(s)	240
MluCI	AATT	4 cut(s)	34, 88, 162, 240
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	222, 256, 305, 365
MroI	TCCGGA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	69, 154, 208
NlaIII	CATG	3 cut(s)	161, 205, 256
NlaIV	GGNNCC	3 cut(s)	121, 344, 350
PaeR7I	CTCGAG	1 cut(s)	296
PagI	TCATGA	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	105, 198
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	290, 293
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	121, 344, 350
PspPI	GGNCC	3 cut(s)	320, 343, 348
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	2 cut(s)	289, 292
Sau3AI	GATC	3 cut(s)	69, 154, 208
Sau96I	GGNCC	3 cut(s)	320, 343, 348
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	4 cut(s)	15, 129, 282, 325
Sfr274I	CTCGAG	1 cut(s)	296
SinI	GGWCC	3 cut(s)	320, 343, 348
SlaI	CTCGAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	34, 88, 162, 240
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	72, 191, 297
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	34, 88, 162, 240
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	105, 198
TseI	GCWGC	2 cut(s)	288, 291
TspDTI	ATGAA	2 cut(s)	174, 246
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	320, 343, 348
XapI	RAATTY	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	296
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.