Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Forward (+)

49700939 .. 49701910

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTATCACTCTTCAGAAACTACAAATCCAAAGCAAAAGAGGGCTTCTTCCAGAAGAATGGAGCTACCATATTGGAACAGCTCATTCATGATTTCAATGGTAATTGTAATCCGATTCAATTGTACTCCGCAGAAGAGCTCAAGAAGGCAACAAACGACTACCACATTGACGGAATGAGATATGACGGTTGGAACTTCCGAGTGTACAAAGGAGTTCATGGAGTTTCTTCAAACATGAGCAAGCACAAGAACGTTTTGAAGCTCTTGGGATGTTGCCTTGAGACAGAGCTGGCCACTCTGGTTTTTGAATTCCCAGCAAAAGGAAATCTCCCTCGTCACATTTATGGAGATAATGCACAATCACTGCCATGGAAGACCAAGTTAAAGATCGCAATTGAAGTAGCAGATGCAGTTTCATATCTTCACCACGGCTCTTCCAAGGTGTTCATTCATAGGAATATAAGAACTGAAAATATCTTCCTGGACCAGGACTGCGTCGCCAAGCTGTCGGATTTCCAAGTGTCACTACCAATTCCTTTGGACCAAGACCATGTACTTTCGGAATGTCTCAGTTTCTTAGGGCACTTATCTCCAGAAGTACTGATGTATAATCGTTATACAGAGAAAAGTGACGTCTTTAACTTGGGGATGATAATATGCGAAATTTTGACGGGAAAAAAAATTTATGAGCTACTAAGACTTCGGTCTTCTGGGGATTCCAAGGAACTCGAAAACATTATGGAGGGAAATTTACTGCATGAGAGCAACATGAGGCAAGTAACAGAATGCAGCAAGCTCGCCGTAAGGTGTCTCGACTCAGATCCTAATACAAGACCCACGGCGCAAGAAGTCTCACAGACACTCAGATCGATCAAAAGGTTCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

297

Amino Acids

33.79

Weight (kDa)

7.62

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 286	1.2e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 288	9e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	636
AciI	CCGC	1 cut(s)	129
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	1 cut(s)	815
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	4 cut(s)	308, 663, 681, 748
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	4 cut(s)	125, 206, 555, 600
AfiI	CCNNNNNNNGG	2 cut(s)	320, 487
AgsI	TTSAA	6 cut(s)	97, 119, 231, 259, 308, 398
AjnI	CCWGG	2 cut(s)	480, 486
AluBI	AGCT	9 cut(s)	65, 82, 139, 262, 289, 505, 691, 796, 886
AluI	AGCT	9 cut(s)	65, 82, 139, 262, 289, 505, 691, 796, 886
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	4 cut(s)	275, 572, 815, 856
AlwI	GGATC	1 cut(s)	815
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	789
ApoI	RAATTY	4 cut(s)	308, 663, 681, 748
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	484, 541
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	484, 541
BaeGI	GKGCMC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	380, 699
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	801
BceAI	ACGGC	3 cut(s)	445, 785, 855
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciT130I	CCWGG	2 cut(s)	482, 488
BcoDI	GTCTC	4 cut(s)	275, 572, 815, 856
BisI	GCNGC	1 cut(s)	790
BlsI	GCNGC	1 cut(s)	791
BmcAI	AGTACT	1 cut(s)	600
Bme1390I	CCNGG	2 cut(s)	482, 488
Bme18I	GGWCC	2 cut(s)	484, 541
BmgT120I	GGNCC	2 cut(s)	484, 541
BmiI	GGNNCC	1 cut(s)	881
BmrFI	CCNGG	2 cut(s)	482, 488
BmsI	GCATC	1 cut(s)	397
BoxI	GACNNNNGTC	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	380, 699
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	125, 299
Bsa29I	ATCGAT	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	5 cut(s)	368, 427, 438, 720, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 487
BseBI	CCWGG	2 cut(s)	482, 488
BseCI	ATCGAT	1 cut(s)	869
BseDI	CCNNGG	5 cut(s)	368, 427, 438, 720, 837
BseGI	GGATG	2 cut(s)	275, 654
BseLI	CCNNNNNNNGG	2 cut(s)	320, 487
BseMII	CTCAG	3 cut(s)	583, 831, 877
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	801
BseYI	CCCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	869
BsiHKAI	GWGCWC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	320, 487
BsmAI	GTCTC	4 cut(s)	275, 572, 815, 856
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	141, 585
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	387, 820, 866, 870
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	3 cut(s)	582, 830, 876
BspDI	ATCGAT	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	881
BspPI	GGATC	1 cut(s)	815
BspQI	GCTCTTC	2 cut(s)	129, 439
BsrGI	TGTACA	1 cut(s)	204
BssECI	CCNNGG	5 cut(s)	368, 427, 438, 720, 837
BssMI	GATC	4 cut(s)	387, 820, 866, 870
BssNI	GRCGYC	1 cut(s)	633
BssT1I	CCWWGG	3 cut(s)	368, 438, 720
Bst2UI	CCWGG	2 cut(s)	482, 488
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	3 cut(s)	17, 129, 439
BstACI	GRCGYC	1 cut(s)	633
BstAUI	TGTACA	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	242, 291, 794, 798
BstDEI	CTNAG	5 cut(s)	569, 577, 695, 817, 863
BstDSI	CCRYGG	3 cut(s)	368, 427, 837
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	275, 654
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	4 cut(s)	390, 823, 869, 873
BstMAI	GTCTC	4 cut(s)	275, 572, 815, 856
BstMBI	GATC	4 cut(s)	387, 820, 866, 870
BstNI	CCWGG	2 cut(s)	482, 488
BstPAI	GACNNNNGTC	1 cut(s)	703
BstSCI	CCNGG	2 cut(s)	480, 486
BstSLI	GKGCMC	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	801
BstV2I	GAAGAC	2 cut(s)	380, 699
BstX2I	RGATCY	1 cut(s)	820
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	820
Bsu15I	ATCGAT	1 cut(s)	869
BsuRI	GGCC	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	869
BtgI	CCRYGG	3 cut(s)	368, 427, 837
BtsCI	GGATG	2 cut(s)	275, 654
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	242, 291, 794, 798
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	2 cut(s)	484, 541
ClaI	ATCGAT	1 cut(s)	869
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	124, 205, 554, 599
CviAII	CATG	7 cut(s)	89, 218, 235, 369, 551, 758, 769
CviQI	GTAC	4 cut(s)	124, 205, 554, 599
DdeI	CTNAG	5 cut(s)	569, 577, 695, 817, 863
DpnI	GATC	4 cut(s)	389, 822, 868, 872
DpnII	GATC	4 cut(s)	387, 820, 866, 870
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	17, 129, 439
EarI	CTCTTC	3 cut(s)	17, 129, 439
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	368, 438, 720
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	484, 541
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	480, 486
EcoT14I	CCWWGG	3 cut(s)	368, 438, 720
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	3 cut(s)	368, 438, 720
FaeI	CATG	7 cut(s)	92, 221, 238, 372, 554, 761, 772
FatI	CATG	7 cut(s)	88, 217, 234, 368, 550, 757, 768
Fnu4HI	GCNGC	1 cut(s)	790
FokI	GGATG	2 cut(s)	282, 661
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	790
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	1 cut(s)	790
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	293
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	1 cut(s)	844
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	7 cut(s)	92, 221, 238, 372, 554, 761, 772
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HinfI	GANTC	3 cut(s)	115, 716, 815
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	7 cut(s)	17, 114, 200, 511, 562, 820, 866
Hpy188III	TCNNGA	5 cut(s)	52, 89, 142, 593, 812
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	252, 633
HpyCH4V	TGCA	4 cut(s)	356, 410, 757, 789
HpyF3I	CTNAG	5 cut(s)	569, 577, 695, 817, 863
HpySE526I	ACGT	2 cut(s)	252, 633
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	7 cut(s)	92, 221, 238, 372, 554, 761, 772
HspAI	GCGC	1 cut(s)	842
Kzo9I	GATC	4 cut(s)	387, 820, 866, 870
LguI	GCTCTTC	2 cut(s)	129, 439
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	801
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	2 cut(s)	252, 633
MaeIII	GTNAC	4 cut(s)	335, 522, 629, 778
MalI	GATC	4 cut(s)	389, 822, 868, 872
MboI	GATC	4 cut(s)	387, 820, 866, 870
MfeI	CAATTG	2 cut(s)	119, 393
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	2 cut(s)	141, 585
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	8 cut(s)	103, 119, 308, 393, 531, 663, 681, 748
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	2 cut(s)	170, 489
MnlI	CCTC	4 cut(s)	34, 342, 736, 765
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	3 cut(s)	383, 639, 889
MslI	CAYNNNNRTG	2 cut(s)	342, 367
Msp20I	TGGCCA	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	482, 488
MunI	CAATTG	2 cut(s)	119, 393
Mva1269I	GAATGC	1 cut(s)	791
MvaI	CCWGG	2 cut(s)	482, 488
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	387, 820, 866, 870
NlaIII	CATG	7 cut(s)	92, 221, 238, 372, 554, 761, 772
NlaIV	GGNNCC	1 cut(s)	881
NmuCI	GTSAC	3 cut(s)	335, 522, 629
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	2 cut(s)	129, 439
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	115, 716
PflFI	GACNNNGTC	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	791
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
PshAI	GACNNNNGTC	1 cut(s)	703
Psp124BI	GAGCTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	480, 486
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	2 cut(s)	480, 486
PspN4I	GGNNCC	1 cut(s)	881
PspPI	GGNCC	2 cut(s)	484, 541
PsuI	RGATCY	1 cut(s)	820
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	4 cut(s)	125, 206, 555, 600
RsaNI	GTAC	4 cut(s)	124, 205, 554, 599
RseI	CAYNNNNRTG	2 cut(s)	342, 367
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	2 cut(s)	129, 439
SaqAI	TTAA	3 cut(s)	383, 639, 889
SatI	GCNGC	1 cut(s)	790
Sau3AI	GATC	4 cut(s)	387, 820, 866, 870
Sau96I	GGNCC	2 cut(s)	484, 541
ScaI	AGTACT	1 cut(s)	600
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	2 cut(s)	482, 488
SduI	GDGCHC	2 cut(s)	141, 585
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	2 cut(s)	484, 541
SmiMI	CAYNNNNRTG	2 cut(s)	342, 367
SmlI	CTYRAG	2 cut(s)	140, 278
SmoI	CTYRAG	2 cut(s)	140, 278
Sse9I	AATT	8 cut(s)	103, 119, 308, 393, 531, 663, 681, 748
SsiI	CCGC	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	480, 486
StyI	CCWWGG	3 cut(s)	368, 438, 720
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	255, 636
TaqI	TCGA	3 cut(s)	729, 813, 869
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	8 cut(s)	103, 119, 308, 393, 531, 663, 681, 748
TatI	WGTACW	4 cut(s)	123, 204, 553, 598
TfiI	GAWTC	2 cut(s)	115, 716
Tru1I	TTAA	3 cut(s)	383, 639, 889
Tru9I	TTAA	3 cut(s)	383, 639, 889
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	3 cut(s)	335, 522, 629
TseI	GCWGC	1 cut(s)	789
Tsp45I	GTSAC	3 cut(s)	335, 522, 629
TspDTI	ATGAA	5 cut(s)	77, 206, 405, 436, 440
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	484, 541
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	4 cut(s)	308, 663, 681, 748
ZraI	GACGTC	1 cut(s)	634
ZrmI	AGTACT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.