Rw2G029300

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010584
Physical Location & Seq
Forward (+)
47368601 .. 47370425
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029300.1

Sequence Viewer

Length: 1029 bp
ATGCCATCATACTTCAGAACCCATAAATCCATGATAGTAGAGGAAAGCATCTTCCTCAAGAATGGAGCTGCCATGTTAGAACAGCTCATACATTCTTTCAATGGGAATTGCAATCCGATTCGGCTCTATTCTATAAAAGAGATCGACAAGGCAACAAGCAATTTCAACTGGGATAGAATCACACATAAGGGTTCCAACTTTGGACTGTACAAAGGGTTTCATGAAGATCATGAAATTTTGGTGAAGAAGTTTGAAGAAGACTCGACTGGAATCATGGATGATCCTCTAGATTTGATTACTAATGAAGTTGCAATTGCCTCAAACATGAGCAAGCACAATAATGTTTTGAAGCTCTTAGGCTGCTGCCTCGAGACTGAGTTCCCCAGGGGCGGACCAGTCATTCGAGGAAACCTCTCTAATCACATTTATGGTGACAAAGGGAAATCACTACCATGGCAGATCAAGTTAAAGATTGCAGTAGAAGTAGCAGATACAATAGCATATATTCATTATGGAATGGCCAAGATGATCATCCACCGAGACATAAAGCCTGGACATATCTTGTTAGACCAAGACTATGTAGCCAAACTGGCCGAGTTCCAAATGTCAATACCAATTCCTTTGGGAAAAACTTATGTAGATGTTGCAGAAAACACTGGGACTCATGGGTGCCTTGCTCCAGAGTACTTTTCCTCAGGACGTATTTTAGAGAAGAGTGATGTCCATAACTTTGGAATTCTATTACTAGAGCTAGCTTCAGGCAGAAGATGGAGTACTCTACTAATTTGGGATATGCAGATCTCTAACGAAGGCGATACTAGTTCAAGTTCATATGGCCAACTGAAGTGTAGAAAGTCTGAAAATCTGTGTAAGAGCTTCTTGGAGGCCAATGTGGGGCTAGAAGAAGAAAACAAGAAGCAAGTAGTGGAAATTGTCAAGCTAGTAGAGAGGTGCTTGAAAAAAGATCCAGATGATAGGCCTATCATGAAAGACGTAGCACAAGCACTCAGATTGATTAAAAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

342

Amino Acids

38.7

Weight (kDa)

6.64

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 70 - 334 7.8e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 336 1.6e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 669
AciI CCGC 1 cut(s) 390
AclWI GGATC 2 cut(s) 275, 959
AcoI YGGCCR 3 cut(s) 519, 591, 835
AcsI RAATTY 2 cut(s) 234, 735
AcuI CTGAAG 2 cut(s) 741, 863
AfaI GTAC 3 cut(s) 209, 686, 775
AfiI CCNNNNNNNGG 2 cut(s) 389, 894
AgsI TTSAA 6 cut(s) 100, 166, 254, 349, 825, 958
AhlI ACTAGT 1 cut(s) 818
AjnI CCWGG 2 cut(s) 383, 550
AluBI AGCT 7 cut(s) 68, 85, 352, 751, 755, 876, 940
AluI AGCT 7 cut(s) 68, 85, 352, 751, 755, 876, 940
Alw26I GTCTC 2 cut(s) 365, 534
AlwI GGATC 2 cut(s) 275, 959
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 5 cut(s) 519, 591, 835, 885, 977
ApeKI GCWGC 3 cut(s) 68, 360, 363
ApoI RAATTY 2 cut(s) 234, 735
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 253, 443
AsuNHI GCTAGC 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 694
BalI TGGCCA 2 cut(s) 521, 837
BanI GGYRCC 1 cut(s) 669
BarI GAAGNNNNNNTAC 2 cut(s) 757, 789
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 55, 347, 350
BccI CCATC 2 cut(s) 13, 762
BciT130I CCWGG 2 cut(s) 385, 552
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 365, 534
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 6 cut(s) 287, 746, 752, 819, 899, 941
BglI GCCNNNNNGGC 1 cut(s) 590
BglII AGATCT 1 cut(s) 798
BisI GCNGC 3 cut(s) 69, 361, 364
BlsI GCNGC 3 cut(s) 70, 362, 365
BmcAI AGTACT 2 cut(s) 686, 775
Bme1390I CCNGG 2 cut(s) 385, 552
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 193, 671
BmrFI CCNGG 2 cut(s) 385, 552
BmrI ACTGGG 2 cut(s) 178, 666
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 755
BmuI ACTGGG 2 cut(s) 178, 666
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpmI CTGGAG 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 530
BsaJI CCNNGG 3 cut(s) 383, 384, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 894
Bse1I ACTGG 5 cut(s) 173, 271, 395, 594, 661
Bse21I CCTNAGG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 530
BseBI CCWGG 2 cut(s) 385, 552
BseDI CCNNGG 3 cut(s) 383, 384, 452
BseGI GGATG 2 cut(s) 283, 531
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 389, 894
BseMII CTCAG 3 cut(s) 366, 708, 1021
BseNI ACTGG 5 cut(s) 173, 271, 395, 594, 661
BseXI GCAGC 3 cut(s) 55, 347, 350
BshFI GGCC 5 cut(s) 521, 593, 837, 887, 979
BshNI GGYRCC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 2 cut(s) 389, 894
BsmAI GTCTC 2 cut(s) 365, 534
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 5 cut(s) 521, 593, 837, 887, 979
BsoBI CYCGRG 1 cut(s) 368
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 390
BspANI GGCC 5 cut(s) 521, 593, 837, 887, 979
BspCNI CTCAG 3 cut(s) 367, 707, 1020
BspHI TCATGA 3 cut(s) 220, 229, 984
BspLI GGNNCC 2 cut(s) 193, 671
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 275, 959
BspT107I GGYRCC 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 5 cut(s) 173, 271, 395, 594, 661
BssECI CCNNGG 3 cut(s) 383, 384, 452
BssMI GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 385, 552
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 332, 753
BstDEI CTNAG 4 cut(s) 355, 375, 694, 1007
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 2 cut(s) 283, 531
BstKTI GATC 7 cut(s) 144, 229, 283, 462, 531, 801, 967
BstMAI GTCTC 2 cut(s) 365, 534
BstMBI GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 2 cut(s) 385, 552
BstSCI CCNGG 2 cut(s) 383, 550
BstV1I GCAGC 3 cut(s) 55, 347, 350
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 798, 964
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 2 cut(s) 798, 964
Bsu36I CCTNAGG 1 cut(s) 694
BsuRI GGCC 5 cut(s) 521, 593, 837, 887, 979
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 2 cut(s) 283, 531
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 332, 753
CciI TCATGA 3 cut(s) 220, 229, 984
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 3 cut(s) 208, 685, 774
CviAII CATG 9 cut(s) 31, 73, 221, 230, 274, 325, 453, 665, 985
CviQI GTAC 3 cut(s) 208, 685, 774
DdeI CTNAG 4 cut(s) 355, 375, 694, 1007
DpnI GATC 7 cut(s) 143, 228, 282, 461, 530, 800, 966
DpnII GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
EaeI YGGCCR 3 cut(s) 519, 591, 835
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 741, 863
Eco81I CCTNAGG 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 735
EcoRII CCWGG 2 cut(s) 383, 550
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 9 cut(s) 34, 76, 224, 233, 277, 328, 456, 668, 988
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 673
FatI CATG 9 cut(s) 30, 72, 220, 229, 273, 324, 452, 664, 984
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 69, 361, 364
FokI GGATG 2 cut(s) 290, 518
Fsp4HI GCNGC 3 cut(s) 69, 361, 364
FspBI CTAG 6 cut(s) 287, 746, 752, 819, 899, 941
GluI GCNGC 3 cut(s) 69, 361, 364
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 5 cut(s) 521, 593, 837, 887, 979
Hin1II CATG 9 cut(s) 34, 76, 224, 233, 277, 328, 456, 668, 988
HinfI GANTC 5 cut(s) 118, 177, 260, 270, 661
HphI GGTGA 2 cut(s) 253, 443
Hpy188I TCNGA 4 cut(s) 17, 117, 859, 1010
Hpy188III TCNNGA 9 cut(s) 58, 221, 230, 287, 370, 680, 696, 968, 985
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 700, 993
HpyCH4V TGCA 5 cut(s) 111, 311, 476, 647, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 4 cut(s) 355, 375, 694, 1007
HpySE526I ACGT 2 cut(s) 700, 993
Hsp92II CATG 9 cut(s) 34, 76, 224, 233, 277, 328, 456, 668, 988
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
LmnI GCTCC 2 cut(s) 65, 682
Lsp1109I GCAGC 3 cut(s) 55, 347, 350
LweI GCATC 1 cut(s) 57
MaeI CTAG 6 cut(s) 287, 746, 752, 819, 899, 941
MaeII ACGT 2 cut(s) 700, 993
MaeIII GTNAC 1 cut(s) 431
MalI GATC 7 cut(s) 143, 228, 282, 461, 530, 800, 966
MboI GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
MboII GAAGA 9 cut(s) 43, 236, 256, 266, 269, 724, 777, 914, 917
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 798, 964
MlsI TGGCCA 2 cut(s) 521, 837
MluCI AATT 8 cut(s) 106, 160, 234, 312, 615, 735, 783, 930
MluNI TGGCCA 2 cut(s) 521, 837
MlyI GAGTC 2 cut(s) 254, 655
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 2 cut(s) 521, 837
MscI TGGCCA 2 cut(s) 521, 837
MseI TTAA 2 cut(s) 467, 1017
MslI CAYNNNNRTG 3 cut(s) 339, 426, 451
Msp20I TGGCCA 2 cut(s) 521, 837
MspR9I CCNGG 2 cut(s) 385, 552
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 2 cut(s) 385, 552
MwoI GCNNNNNNNGC 1 cut(s) 590
NcoI CCATGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 832
NdeII GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 9 cut(s) 34, 76, 224, 233, 277, 328, 456, 668, 988
NlaIV GGNNCC 2 cut(s) 193, 671
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 368
PagI TCATGA 3 cut(s) 220, 229, 984
PasI CCCWGGG 1 cut(s) 384
PceI AGGCCT 1 cut(s) 979
PfeI GAWTC 3 cut(s) 118, 177, 270
PkrI GCNGC 3 cut(s) 70, 362, 365
PleI GAGTC 2 cut(s) 254, 655
PpsI GAGTC 2 cut(s) 254, 655
Psp6I CCWGG 2 cut(s) 383, 550
PspGI CCWGG 2 cut(s) 383, 550
PspN4I GGNNCC 2 cut(s) 193, 671
PspPI GGNCC 1 cut(s) 392
PsrI GAACNNNNNNTAC 2 cut(s) 72, 104
PsuI RGATCY 2 cut(s) 798, 964
RsaI GTAC 3 cut(s) 209, 686, 775
RsaNI GTAC 3 cut(s) 208, 685, 774
RseI CAYNNNNRTG 3 cut(s) 339, 426, 451
SaqAI TTAA 2 cut(s) 467, 1017
SatI GCNGC 3 cut(s) 69, 361, 364
Sau3AI GATC 7 cut(s) 141, 226, 280, 459, 528, 798, 964
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 2 cut(s) 686, 775
SchI GAGTC 2 cut(s) 254, 655
ScrFI CCNGG 2 cut(s) 385, 552
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 3 cut(s) 339, 426, 451
SmlI CTYRAG 2 cut(s) 56, 368
SmoI CTYRAG 2 cut(s) 56, 368
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 8 cut(s) 106, 160, 234, 312, 615, 735, 783, 930
SseBI AGGCCT 1 cut(s) 979
SsiI CCGC 1 cut(s) 390
SspMI CTAG 6 cut(s) 287, 746, 752, 819, 899, 941
StuI AGGCCT 1 cut(s) 979
StyD4I CCNGG 2 cut(s) 383, 550
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 703, 996
TaqI TCGA 4 cut(s) 144, 263, 369, 403
TasI AATT 8 cut(s) 106, 160, 234, 312, 615, 735, 783, 930
TatI WGTACW 3 cut(s) 207, 684, 773
TfiI GAWTC 3 cut(s) 118, 177, 270
Tru1I TTAA 2 cut(s) 467, 1017
Tru9I TTAA 2 cut(s) 467, 1017
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 3 cut(s) 68, 360, 363
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 7 cut(s) 209, 237, 246, 318, 497, 819, 1001
TspRI CASTG 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 234, 735
XbaI TCTAGA 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 6 cut(s) 287, 746, 752, 819, 899, 941
ZrmI AGTACT 2 cut(s) 686, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.