Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Forward (+)

7641970 .. 7643398

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTATCACGCTTCAGAAACCACAAAAACAAGAGAAAAGAGGGCTATTTCCTGAAAAATGGAGCTGTGATGCTGGAACAGCTCATCCATTCTTTTAATGGGAATTGTAATCCAATTCGGATGTACTTTGGAAAAGAGCTCAAGAAGGCAACAAACAACTACAACTGGGATAGAATGACACATGAGAATTGGAACTTCCAACTGTACAAAGGAGTTCATGACGATCATGAAATTCTAGTGAAGAAGTTTGAAGGAGACTCAAACAGTTGCATGGACCCTCTAGAACTAATTACAAATGAAGCTGCTATTGCCTCAAACATGAGCAAGCAAAAGAATGTTTTGAAGCTCTTGGGCTGCTGCCTTGAGACTGAGTTGCCTACCCTTGTTTATGAATTCCCAGCAAAGGGAATTCTCTCCCATCACATCTATAGGGGCAGTCAATTGCTACCATGGCAGACTAAGCTAAAGATTGCAGTTGAAGTAGCAGATGCAGTGGCATATAAAGACAGAGGTTCATGTTCATGTTCCACTATGGCACGAGAAAGAGGTTCATCCATCGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.59

Weight (kDa)

8.84

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	231, 392, 408
AfaI	GTAC	2 cut(s)	125, 206
AfiI	CCNNNNNNNGG	2 cut(s)	403, 404
AgsI	TTSAA	3 cut(s)	251, 343, 479
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	6 cut(s)	65, 82, 139, 302, 346, 463
AluI	AGCT	6 cut(s)	65, 82, 139, 302, 346, 463
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	249, 359
ApeKI	GCWGC	3 cut(s)	302, 354, 357
ApoI	RAATTY	3 cut(s)	231, 392, 408
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	289, 341, 344
BccI	CCATC	2 cut(s)	426, 563
BcoDI	GTCTC	2 cut(s)	249, 359
BfaI	CTAG	2 cut(s)	236, 281
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	3 cut(s)	303, 355, 358
BlsI	GCNGC	3 cut(s)	304, 356, 359
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	60, 478
BmuI	ACTGGG	1 cut(s)	175
BpuEI	CTTGAG	2 cut(s)	125, 383
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 404
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	3 cut(s)	84, 126, 551
BseLI	CCNNNNNNNGG	2 cut(s)	403, 404
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	289, 341, 344
BseYI	CCCAGC	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	403, 404
BsmAI	GTCTC	2 cut(s)	249, 359
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	217, 226
BspLI	GGNNCC	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	1 cut(s)	223
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	204, 266
BstAUI	TGTACA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	369, 459
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	84, 126, 551
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	249, 359
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 308, 451, 460
BstSFI	CTRYAG	1 cut(s)	427
BstV1I	GCAGC	3 cut(s)	289, 341, 344
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	84, 126, 551
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	326
CciI	TCATGA	2 cut(s)	217, 226
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	124, 205
CviAII	CATG	8 cut(s)	182, 218, 227, 271, 319, 450, 516, 522
CviJI	RGCY	8 cut(s)	45, 65, 82, 139, 302, 346, 354, 463
CviKI_1	RGCY	8 cut(s)	45, 65, 82, 139, 302, 346, 354, 463
CviQI	GTAC	2 cut(s)	124, 205
DdeI	CTNAG	2 cut(s)	369, 459
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRI	GAATTC	2 cut(s)	392, 408
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	8 cut(s)	185, 221, 230, 274, 322, 453, 519, 525
FatI	CATG	8 cut(s)	181, 217, 226, 270, 318, 449, 515, 521
Fnu4HI	GCNGC	3 cut(s)	303, 355, 358
FokI	GGATG	3 cut(s)	71, 133, 538
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	303, 355, 358
FspBI	CTAG	2 cut(s)	236, 281
GluI	GCNGC	3 cut(s)	303, 355, 358
GsaI	CCCAGC	1 cut(s)	401
Hin1II	CATG	8 cut(s)	185, 221, 230, 274, 322, 453, 519, 525
HinfI	GANTC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	17, 120
Hpy188III	TCNNGA	5 cut(s)	52, 142, 218, 227, 281
HpyAV	CCTTC	2 cut(s)	139, 245
HpyCH4III	ACNGT	2 cut(s)	204, 266
HpyCH4V	TGCA	3 cut(s)	270, 473, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 308, 451, 460
HpyF3I	CTNAG	2 cut(s)	369, 459
Hsp92II	CATG	8 cut(s)	185, 221, 230, 274, 322, 453, 519, 525
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	59, 65, 151, 411
Lsp1109I	GCAGC	3 cut(s)	289, 341, 344
LweI	GCATC	2 cut(s)	60, 478
MaeI	CTAG	2 cut(s)	236, 281
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	8 cut(s)	103, 114, 187, 231, 288, 392, 408, 440
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	34, 288, 322, 503, 539
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	520
MunI	CAATTG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	79, 308, 451, 460
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	8 cut(s)	185, 221, 230, 274, 322, 453, 519, 525
NlaIV	GGNNCC	1 cut(s)	276
PagI	TCATGA	2 cut(s)	217, 226
PkrI	GCNGC	3 cut(s)	304, 356, 359
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	2 cut(s)	125, 206
RsaNI	GTAC	2 cut(s)	124, 205
RseI	CAYNNNNRTG	1 cut(s)	520
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	303, 355, 358
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	8 cut(s)	67, 84, 141, 304, 348, 465, 514, 550
SfaNI	GCATC	2 cut(s)	60, 478
SfcI	CTRYAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	2 cut(s)	140, 362
SmoI	CTYRAG	2 cut(s)	140, 362
Sse9I	AATT	8 cut(s)	103, 114, 187, 231, 288, 392, 408, 440
SspMI	CTAG	2 cut(s)	236, 281
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	204, 266
TaqI	TCGA	1 cut(s)	558
TasI	AATT	8 cut(s)	103, 114, 187, 231, 288, 392, 408, 440
TatI	WGTACW	2 cut(s)	123, 204
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	3 cut(s)	302, 354, 357
TspDTI	ATGAA	7 cut(s)	206, 243, 312, 405, 504, 510, 540
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	231, 392, 408
XbaI	TCTAGA	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	2 cut(s)	236, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.