Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Reverse (-)

21163785 .. 21164414

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCTATCAAGATTCAGAAACAACAAATACAACAGGGAAAAGAAGGGCTGCTTCTCGAAGAATGGAGCTGCTATGTTGGAACAGCTCATACATTCTTTCGATGGGAGTTGTAATCCGATTCGGATGTACTCTGAACAAGACCTCAACAAGGCAACGAATGACTACGGCTGGGATGGAATGATACATAGGGATTGGAATTCTCGATTTTACAAAGGAGTCCATGAAGAACGCCAGATTTTGGTTAAGAAGTTCGAAGCAGACTCGAGTAGTTACATGGATCCTCTGGAATTGGTTGCGAATGAAGTAGCAATTGCCTCGAACATGAGCAAGCACAAGAATGTTTTGAAGCTGTTGGGTTGCTGCCTTGAGAGCGAGTTGCCTACACTAATTTATGAATTCCCAACAAAAGGTAATCTCTCCCACCACATCTATGGAGATGGTGAATCACCACCGTGGCCGATCAGGTTAAAGATTGCAATTGAAGTGGCAGGTGCAGTTGCTTATCTCCACTATGGCATGCCGAAGATCGATCATCCATCGAGATATAAAGACTGGACATATCTTCTTAGACCAAGACTATGTCGCCAAGCTGTCCGAGTTCCGAACCTCAGTACCAATTCCTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

24.19

Weight (kDa)

8.88

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 170	1.5e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 170	6.8e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	238
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	196, 395
AfaI	GTAC	2 cut(s)	128, 613
AfiI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
AgsI	TTSAA	2 cut(s)	346, 482
AleI	CACNNNNGTG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	68, 85, 349, 590
AluI	AGCT	4 cut(s)	68, 85, 349, 590
AlwI	GGATC	2 cut(s)	272, 285
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	48, 68, 360
ApoI	RAATTY	2 cut(s)	196, 395
AsuHPI	GGTGA	2 cut(s)	438, 452
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	595, 628
BamHI	GGATCC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	35, 55, 347
BccI	CCATC	4 cut(s)	95, 167, 431, 544
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	3 cut(s)	49, 69, 361
BlsI	GCNGC	3 cut(s)	50, 70, 362
BmeT110I	CYCGRG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 238, 407
Bse1I	ACTGG	1 cut(s)	557
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	3 cut(s)	129, 178, 532
BseLI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
BseMII	CTCAG	1 cut(s)	622
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	35, 55, 347
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
BsnI	GGCC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	277, 459, 525, 529
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	621
BspDI	ATCGAT	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	272, 285
BspT104I	TTCGAA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	4 cut(s)	277, 459, 525, 529
Bst4CI	ACNGT	1 cut(s)	453
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	329, 518
BstDEI	CTNAG	2 cut(s)	566, 608
BstDSI	CCRYGG	1 cut(s)	452
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	129, 178, 532
BstKTI	GATC	4 cut(s)	280, 462, 528, 532
BstMBI	GATC	4 cut(s)	277, 459, 525, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	35, 55, 347
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	129, 178, 532
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	329, 518
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	127, 612
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	4 cut(s)	221, 274, 322, 517
CviJI	RGCY	7 cut(s)	48, 68, 85, 168, 349, 457, 590
CviKI_1	RGCY	7 cut(s)	48, 68, 85, 168, 349, 457, 590
CviQI	GTAC	2 cut(s)	127, 612
DdeI	CTNAG	2 cut(s)	566, 608
DpnI	GATC	4 cut(s)	279, 461, 527, 531
DpnII	GATC	4 cut(s)	277, 459, 525, 529
EaeI	YGGCCR	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRI	GAATTC	2 cut(s)	196, 395
FaeI	CATG	4 cut(s)	224, 277, 325, 520
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	220, 273, 321, 516
Fnu4HI	GCNGC	3 cut(s)	49, 69, 361
FokI	GGATG	3 cut(s)	136, 185, 519
Fsp4HI	GCNGC	3 cut(s)	49, 69, 361
GluI	GCNGC	3 cut(s)	49, 69, 361
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	224, 277, 325, 520
HinfI	GANTC	5 cut(s)	12, 118, 216, 260, 443
HphI	GGTGA	2 cut(s)	438, 452
Hpy188I	TCNGA	6 cut(s)	17, 117, 123, 133, 596, 603
Hpy188III	TCNNGA	5 cut(s)	9, 55, 201, 284, 540
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	476, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	2 cut(s)	566, 608
Hsp92II	CATG	4 cut(s)	224, 277, 325, 520
Kzo9I	GATC	4 cut(s)	277, 459, 525, 529
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	7 cut(s)	19, 154, 245, 269, 448, 474, 538
Lsp1109I	GCAGC	3 cut(s)	35, 55, 347
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	279, 461, 527, 531
MboI	GATC	4 cut(s)	277, 459, 525, 529
MboII	GAAGA	4 cut(s)	70, 236, 535, 554
MfeI	CAATTG	2 cut(s)	309, 477
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 616
MlyI	GAGTC	2 cut(s)	225, 254
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	152, 291, 325, 617
MseI	TTAA	2 cut(s)	243, 467
MslI	CAYNNNNRTG	3 cut(s)	336, 429, 451
MunI	CAATTG	2 cut(s)	309, 477
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	4 cut(s)	277, 459, 525, 529
NlaIII	CATG	4 cut(s)	224, 277, 325, 520
NlaIV	GGNNCC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	12, 118, 443
PflFI	GACNNNGTC	1 cut(s)	579
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	50, 70, 362
PleI	GAGTC	2 cut(s)	224, 254
PpsI	GAGTC	2 cut(s)	224, 254
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	279
PspXI	VCTCGAGB	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	2 cut(s)	128, 613
RsaNI	GTAC	2 cut(s)	127, 612
RseI	CAYNNNNRTG	3 cut(s)	336, 429, 451
SaqAI	TTAA	2 cut(s)	243, 467
SatI	GCNGC	3 cut(s)	49, 69, 361
Sau3AI	GATC	4 cut(s)	277, 459, 525, 529
SchI	GAGTC	2 cut(s)	225, 254
SetI	ASST	9 cut(s)	70, 87, 144, 351, 412, 467, 493, 592, 609
Sfr274I	CTCGAG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	3 cut(s)	336, 429, 451
SmlI	CTYRAG	2 cut(s)	262, 365
SmoI	CTYRAG	2 cut(s)	262, 365
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 616
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	8 cut(s)	56, 99, 202, 252, 263, 317, 528, 539
TasI	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 616
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	12, 118, 443
Tru1I	TTAA	2 cut(s)	243, 467
Tru9I	TTAA	2 cut(s)	243, 467
TseI	GCWGC	3 cut(s)	48, 68, 360
TspDTI	ATGAA	3 cut(s)	237, 315, 408
Tth111I	GACNNNGTC	1 cut(s)	579
Van91I	CCANNNNNTGG	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	196, 395
XceI	RCATGY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.