Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010584

Physical Location & Seq

Genomic Coordinates Reverse (-)

27249044 .. 27250569

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1223800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTATCAAGATTCAGAAACAACAAATACAACAGGGAAAAGAAGGGCTGCTTCTTGAAGAATGGAGCTGCTATGTTGGAACAGCTCATACATTCTTTCGATGGGAGTTGTAATCCGATTCGGATGCACTCCGAACGAGACCTCAACAAGGCAACGAATGACTACGGCTGGGATGGAATGATACATAGGGATTGGAATTCTCGACTTTACAAAGGAGTCCACGAAGAACGCCAGATTTTGGTTAAGAAGTTCGAAGCAGACTCGAGTAGTTACATGGATCCTCTGGAATTGATTGCGAATGAAGTAGCAATTGCCTCGAACATGAGCAAGCACAAGAACGTTTTGAAGCTGTTGGGTTGCTGCCTTGAGACCGAGCTGCCTACACTAATTTATGAATTCCCAACAAAAGGTAATCTCTCCCACCACATCTATGGAGATGGTGAATCGCTAGCGTGGCCGATCAGGTTAAAGATTGCAATTGAAGTAGCAGGTGCAGTTGCTTATCTCCACTACGGCATGCCGAAGATGATCATCCATCGAGATATAAAGACGGGACATATCTTCTTAGACCAAGACTATGTCGCCAAGCTGTCCGAGTTCCGAACCTCAGTACCAATTCCTTTTGGTAAAACTCATGTAGATGTTGAAGTGATTACCGGAACTCAAGGGTGCCTGCCTCCTGAATATGCTATATCCGGACGTACTTCAGAAAAGAGCGATGTCCACAGCTTTGGAGTTCTATTATGTGAGATCTTTGCAGGAAAGAGATGGGGTGGTTTACTAGATTGGTATATGGAGAACGATAACAACGCCGCTTCAAGCTCATATAACGATCACCAGTTTACGATGTTAGCAAATCTTTGCAAAACCTATTTAGAGGCCAAGGTATTGGAAGAAGAAAACAAGAAGCAAGTAGTGGAATGTGCCAAGCTCATAGGGAGGTGTCTCAAAGCAAATCCGGACGAGAGGCCGATCATGACGGAGGTAGCACAATCACTCAGAGTGATAAAAAACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

38.5

Weight (kDa)

6.89

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 331	7e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 333	4.4e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28540
malus_domestica	MD17G1223800.v1.1
prunus_persica	Prupe.3G099400_v2.0.a1 Prupe.3G099500_v2.0.a1
pyrus_communis	pycom17g22760 pycom17g22770
rosa_chinensis	RchiOBHm_Chr2g0132861
rosa_laevigata	RLG00000019286
rosa_multiflora	Rmu_co8384525.1_g000001 Rmu_sc0023498.1_g000001 Rmu_sc0023498.1_g000002
rosa_rugosa	Rorug02G0307900
rosa_samantha	Rh2AG360300 Rh2AG360500 Rh2BG366300 Rh2BG366400 Rh2CG343700 Rh2DG383300 Rh2DG383400
rosa_wichuraiana	Rw2G029300 Rw2G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccIII	TCCGGA	2 cut(s)	695, 958
AciI	CCGC	1 cut(s)	813
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	196, 395
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	612, 703
AfiI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
AgsI	TTSAA	5 cut(s)	58, 346, 482, 647, 819
AluBI	AGCT	8 cut(s)	68, 85, 349, 376, 589, 729, 822, 931
AluI	AGCT	8 cut(s)	68, 85, 349, 376, 589, 729, 822, 931
Alw26I	GTCTC	3 cut(s)	132, 362, 950
AlwI	GGATC	2 cut(s)	272, 285
Ama87I	CYCGRG	1 cut(s)	262
Aor13HI	TCCGGA	2 cut(s)	695, 958
AoxI	GGCC	3 cut(s)	455, 879, 968
ApeKI	GCWGC	4 cut(s)	48, 68, 360, 376
ApoI	RAATTY	2 cut(s)	196, 395
AsuHPI	GGTGA	2 cut(s)	452, 827
AsuII	TTCGAA	1 cut(s)	252
AsuNHI	GCTAGC	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	35, 55, 347, 363
BccI	CCATC	5 cut(s)	95, 167, 431, 543, 762
BceAI	ACGGC	2 cut(s)	181, 529
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 297, 331
BclI	TGATCA	1 cut(s)	528
BcoDI	GTCTC	3 cut(s)	132, 362, 950
BfaI	CTAG	2 cut(s)	449, 782
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	5 cut(s)	49, 69, 361, 377, 813
BlsI	GCNGC	5 cut(s)	50, 70, 362, 378, 814
BmeT110I	CYCGRG	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	279, 671
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	386, 648
BsaBI	GATNNNNATC	1 cut(s)	530
BsaI	GGTCTC	2 cut(s)	132, 362
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	3 cut(s)	656, 695, 958
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 238, 407
Bse1I	ACTGG	1 cut(s)	838
Bse8I	GATNNNNATC	1 cut(s)	530
BseAI	TCCGGA	2 cut(s)	695, 958
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	3 cut(s)	129, 178, 531
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
BseMII	CTCAG	2 cut(s)	621, 1012
BseNI	ACTGG	1 cut(s)	838
BseXI	GCAGC	4 cut(s)	35, 55, 347, 363
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	457, 881, 970
BshNI	GGYRCC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	657, 696, 959
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	148, 238, 407
BsmAI	GTCTC	3 cut(s)	132, 362, 950
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	457, 881, 970
Bso31I	GGTCTC	2 cut(s)	132, 362
BsoBI	CYCGRG	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	252
Bsp13I	TCCGGA	2 cut(s)	695, 958
Bsp143I	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	3 cut(s)	457, 881, 970
BspCNI	CTCAG	2 cut(s)	620, 1011
BspEI	TCCGGA	2 cut(s)	695, 958
BspHI	TCATGA	1 cut(s)	975
BspLI	GGNNCC	2 cut(s)	279, 671
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	272, 285
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	669
BspTNI	GGTCTC	2 cut(s)	132, 362
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
BssT1I	CCWWGG	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	329, 450, 518, 674
BstDEI	CTNAG	3 cut(s)	565, 607, 998
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	129, 178, 531
BstKTI	GATC	6 cut(s)	280, 462, 531, 753, 835, 975
BstMAI	GTCTC	3 cut(s)	132, 362, 950
BstMBI	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	35, 55, 347, 363
BstX2I	RGATCY	2 cut(s)	277, 750
BstXI	CCANNNNNNTGG	3 cut(s)	431, 731, 889
BstYI	RGATCY	2 cut(s)	277, 750
BsuRI	GGCC	3 cut(s)	457, 881, 970
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	3 cut(s)	129, 178, 531
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	4 cut(s)	329, 450, 518, 674
CciI	TCATGA	1 cut(s)	975
Csp6I	GTAC	2 cut(s)	611, 702
CviAII	CATG	5 cut(s)	274, 322, 517, 635, 976
CviQI	GTAC	2 cut(s)	611, 702
DdeI	CTNAG	3 cut(s)	565, 607, 998
DpnI	GATC	6 cut(s)	279, 461, 530, 752, 834, 974
DpnII	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
EaeI	YGGCCR	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	882
Eco31I	GGTCTC	2 cut(s)	132, 362
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRI	GAATTC	2 cut(s)	196, 395
EcoT14I	CCWWGG	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	5 cut(s)	277, 325, 520, 638, 979
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	5 cut(s)	273, 321, 516, 634, 975
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	5 cut(s)	49, 69, 361, 377, 813
FokI	GGATG	3 cut(s)	136, 185, 518
Fsp4HI	GCNGC	5 cut(s)	49, 69, 361, 377, 813
FspBI	CTAG	2 cut(s)	449, 782
GluI	GCNGC	5 cut(s)	49, 69, 361, 377, 813
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	457, 881, 970
HapII	CCGG	3 cut(s)	657, 696, 959
Hin1II	CATG	5 cut(s)	277, 325, 520, 638, 979
HinfI	GANTC	5 cut(s)	12, 118, 216, 260, 443
HpaII	CCGG	3 cut(s)	657, 696, 959
HphI	GGTGA	2 cut(s)	452, 827
Hpy166II	GTNNAC	4 cut(s)	220, 724, 779, 843
Hpy188I	TCNGA	8 cut(s)	17, 117, 123, 133, 595, 602, 709, 1001
Hpy188III	TCNNGA	9 cut(s)	9, 55, 201, 284, 539, 680, 696, 959, 976
Hpy8I	GTNNAC	4 cut(s)	220, 724, 779, 843
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	339, 700
HpyCH4V	TGCA	5 cut(s)	127, 476, 494, 758, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	3 cut(s)	565, 607, 998
HpySE526I	ACGT	2 cut(s)	339, 700
Hsp92II	CATG	5 cut(s)	277, 325, 520, 638, 979
Kpn2I	TCCGGA	2 cut(s)	695, 958
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	4 cut(s)	35, 55, 347, 363
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	449, 782
MaeII	ACGT	2 cut(s)	339, 700
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	6 cut(s)	279, 461, 530, 752, 834, 974
MboI	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
MboII	GAAGA	6 cut(s)	70, 236, 535, 553, 905, 908
MfeI	CAATTG	2 cut(s)	309, 477
MflI	RGATCY	2 cut(s)	277, 750
MluCI	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 615
MlyI	GAGTC	2 cut(s)	225, 254
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	9 cut(s)	152, 291, 325, 616, 687, 871, 933, 960, 976
MroI	TCCGGA	2 cut(s)	695, 958
MseI	TTAA	2 cut(s)	243, 467
MslI	CAYNNNNRTG	2 cut(s)	429, 639
MspI	CCGG	3 cut(s)	657, 696, 959
MunI	CAATTG	2 cut(s)	309, 477
MwoI	GCNNNNNNNGC	1 cut(s)	454
NdeII	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	5 cut(s)	277, 325, 520, 638, 979
NlaIV	GGNNCC	2 cut(s)	279, 671
NspI	RCATGY	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	262
PagI	TCATGA	1 cut(s)	975
PaqCI	CACCTGC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	12, 118, 443
PflFI	GACNNNGTC	1 cut(s)	578
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	5 cut(s)	50, 70, 362, 378, 814
PleI	GAGTC	2 cut(s)	224, 254
PpsI	GAGTC	2 cut(s)	224, 254
Psp1406I	AACGTT	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	279, 671
PspXI	VCTCGAGB	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
PsuI	RGATCY	2 cut(s)	277, 750
PsyI	GACNNNGTC	1 cut(s)	578
RsaI	GTAC	2 cut(s)	612, 703
RsaNI	GTAC	2 cut(s)	611, 702
RseI	CAYNNNNRTG	2 cut(s)	429, 639
SaqAI	TTAA	2 cut(s)	243, 467
SatI	GCNGC	5 cut(s)	49, 69, 361, 377, 813
Sau3AI	GATC	6 cut(s)	277, 459, 528, 750, 832, 972
SchI	GAGTC	2 cut(s)	225, 254
SfaNI	GCATC	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	2 cut(s)	429, 639
SmlI	CTYRAG	3 cut(s)	262, 365, 663
SmoI	CTYRAG	3 cut(s)	262, 365, 663
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 615
SsiI	CCGC	1 cut(s)	813
SspMI	CTAG	2 cut(s)	449, 782
StyI	CCWWGG	1 cut(s)	882
TaiI	ACGT	2 cut(s)	342, 703
TaqI	TCGA	6 cut(s)	99, 202, 252, 263, 317, 538
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	7 cut(s)	196, 287, 309, 387, 395, 477, 615
TauI	GCSGC	1 cut(s)	815
TfiI	GAWTC	3 cut(s)	12, 118, 443
Tru1I	TTAA	2 cut(s)	243, 467
Tru9I	TTAA	2 cut(s)	243, 467
TseI	GCWGC	4 cut(s)	48, 68, 360, 376
TspDTI	ATGAA	2 cut(s)	315, 408
TspGWI	ACGGA	1 cut(s)	995
Tth111I	GACNNNGTC	1 cut(s)	578
Van91I	CCANNNNNTGG	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	196, 395
XceI	RCATGY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	262
XspI	CTAG	2 cut(s)	449, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.