Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Reverse (-)

22014833 .. 22019672

Gene Structure 4840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCCTTCTCCTCTTCCACTCTCTCCCCACATTCCTCCACCAACCACCCTCTCATTCTCTCCCGCTCTCCCCTCTCTTCACTTCCCAAAACCACCACCGCCACTTTCCTCACCACCTCATCATCATTTCGACCTCTCCCATTCCACAACACCACAACCACAATCCAATGCGTCGACAAAGCTTCAAGTCTCGACCCCAAGACCGGAGTTGCAGTCTACAAGCCCAAGTCCTATGAGGTTCTCGTCACTGACGCTGCCAACTCGCTTGCCTATGCTCTTGAAGATGGCAAGACCCGCTTGGAGATTGACTTCCCGCCCCTTCCTAGCAACATATCTTCCTATAAGGGGTCTTCAGATGACTTCATTGATGCCAATGTTCAACTTGCCTTGGCTGTTGTACGGAAGCTAAAAGAAAGAAAGGAGACGAGAGTTTGTATTGTGTTTCCGGATAAGCCAGAGAGGCGCAGGGCCTCTGAGCTGTTTAGAACAGCTATCGACTCGATTGGTGATATAACCATAGGTTCCCTTGATGATGTTCCTGGTGGTCCAGTCACCATGTTTTTCAGATCCATAAGGAACACACTTGATTTTGATTTCGAAGATGAAAATGAAGGTCGCTGGGCATCCAATGAGCCTCCTTCTCTTTATATGTTCATTAATTGTAGCACGCGCGAACTTGCTGGAATTGAGAAGTTTGTGGAACAATTTGCCATGTCAACCCCATCACTTCTATTCAATCTCGAACTCGATACGTTGCGTGCTGACTTGGGTCTTGTGGGGTTTCCAACCAAGGATTTACATTATCGGTTTCTTTCACAATTTATTCCAGTGTTCTACATTCGAATAAGAGAGTACTCGAAGACAGTAGCAGTAGCGCCTTATATTGTGAATTACAATGGAGCATTATTTCGCCAATACCCTGGGCCTTGGCAGGTAATGCTTAAACAAGCAGATGGTTCTTTTGCTTGCGTAGCAGAGAGTGCAACACGCTTCACTCTGGGTGAAACAAAAGAAGAACTGTTGAGGGTCTTGGGACTTACAGAAGAAGAAGGAAGCTCACTGGAATTTCTTCGTAGAGGCTACAAGTCTGCTACTTGGTGGGAAGAAGATGTTGAGTTGGAATTGTCTTCTGCTTGGCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

382

Amino Acids

42.76

Weight (kDa)

5.29

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	75 - 337	6.1e-48	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	922
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	2 cut(s)	174, 216
AccII	CGCG	2 cut(s)	670, 672
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	4 cut(s)	64, 99, 295, 314
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	1064
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	399, 854
AfiI	CCNNNNNNNGG	2 cut(s)	203, 345
AgsI	TTSAA	4 cut(s)	186, 281, 380, 736
AjnI	CCWGG	2 cut(s)	538, 919
AluBI	AGCT	5 cut(s)	182, 406, 478, 491, 1056
AluI	AGCT	5 cut(s)	182, 406, 478, 491, 1056
Alw26I	GTCTC	2 cut(s)	194, 416
AlwI	GGATC	1 cut(s)	561
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	3 cut(s)	3, 468, 923
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	1064
AseI	ATTAAT	1 cut(s)	657
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	3 cut(s)	465, 672, 877
AspS9I	GGNCC	3 cut(s)	468, 545, 923
AsuHPI	GGTGA	4 cut(s)	103, 518, 544, 1013
AsuII	TTCGAA	2 cut(s)	597, 841
AvaII	GGWCC	1 cut(s)	545
BbsI	GAAGAC	3 cut(s)	342, 866, 1119
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	278, 730, 947
BciT130I	CCWGG	2 cut(s)	540, 921
BcoDI	GTCTC	2 cut(s)	194, 416
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	922
BglI	GCCNNNNNGGC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	2 cut(s)	540, 921
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	468, 545, 923
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	540, 921
BmsI	GCATC	2 cut(s)	358, 632
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	342, 866, 1119
Bpu14I	TTCGAA	2 cut(s)	597, 841
BsaJI	CCNNGG	5 cut(s)	387, 789, 919, 920, 926
BsaWI	WCCGGW	2 cut(s)	203, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 345
Bse1I	ACTGG	3 cut(s)	548, 827, 1065
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	540, 921
BseDI	CCNNGG	5 cut(s)	387, 789, 919, 920, 926
BseGI	GGATG	1 cut(s)	623
BseLI	CCNNNNNNNGG	2 cut(s)	203, 345
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	548, 827, 1065
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	670, 672
BshFI	GGCC	3 cut(s)	5, 470, 925
BsiSI	CCGG	2 cut(s)	204, 446
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	2 cut(s)	203, 345
BsmAI	GTCTC	2 cut(s)	194, 416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	1047
BsnI	GGCC	3 cut(s)	5, 470, 925
Bsp119I	TTCGAA	2 cut(s)	597, 841
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	566
BspACI	CCGC	4 cut(s)	64, 99, 295, 314
BspANI	GGCC	3 cut(s)	5, 470, 925
BspCNI	CTCAG	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	670, 672
BspLI	GGNNCC	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	1 cut(s)	561
BspT104I	TTCGAA	2 cut(s)	597, 841
BsrBI	CCGCTC	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	548, 827, 1065
BssECI	CCNNGG	5 cut(s)	387, 789, 919, 920, 926
BssMI	GATC	1 cut(s)	566
BssT1I	CCWWGG	3 cut(s)	387, 789, 926
Bst2UI	CCWGG	2 cut(s)	540, 921
Bst4CI	ACNGT	2 cut(s)	865, 1020
Bst6I	CTCTTC	2 cut(s)	19, 82
BstAPI	GCANNNNNTGC	2 cut(s)	937, 980
BstBI	TTCGAA	2 cut(s)	597, 841
BstC8I	GCNNGC	4 cut(s)	267, 668, 759, 967
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	623
BstFNI	CGCG	2 cut(s)	670, 672
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	3 cut(s)	465, 672, 877
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	194, 416
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	5 cut(s)	294, 460, 937, 971, 980
BstNI	CCWGG	2 cut(s)	540, 921
BstPAI	GACNNNNGTC	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	538, 919
BstUI	CGCG	2 cut(s)	670, 672
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	3 cut(s)	342, 866, 1119
BstX2I	RGATCY	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	920
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	3 cut(s)	5, 470, 925
BtsCI	GGATG	1 cut(s)	623
BtsIMutI	CAGTG	3 cut(s)	246, 834, 1058
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	4 cut(s)	267, 668, 759, 967
CfoI	GCGC	3 cut(s)	465, 672, 877
Cfr13I	GGNCC	3 cut(s)	468, 545, 923
CseI	GACGC	2 cut(s)	160, 260
Csp6I	GTAC	2 cut(s)	398, 853
CviAII	CATG	2 cut(s)	556, 712
CviQI	GTAC	2 cut(s)	398, 853
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	19, 82
EarI	CTCTTC	2 cut(s)	19, 82
Eco130I	CCWWGG	3 cut(s)	387, 789, 926
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	538, 919
EcoT14I	CCWWGG	3 cut(s)	387, 789, 926
ErhI	CCWWGG	3 cut(s)	387, 789, 926
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	559, 715
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	2 cut(s)	555, 711
FauI	CCCGC	3 cut(s)	71, 302, 321
FblI	GTMKAC	2 cut(s)	174, 216
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	610
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	3 cut(s)	464, 671, 876
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	3 cut(s)	5, 470, 925
HapII	CCGG	2 cut(s)	204, 446
HgaI	GACGC	2 cut(s)	160, 260
HhaI	GCGC	3 cut(s)	465, 672, 877
Hin1II	CATG	2 cut(s)	559, 715
Hin6I	GCGC	3 cut(s)	463, 670, 875
HinP1I	GCGC	3 cut(s)	463, 670, 875
HincII	GTYRAC	2 cut(s)	175, 717
HindII	GTYRAC	2 cut(s)	175, 717
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	2 cut(s)	204, 446
HphI	GGTGA	4 cut(s)	103, 518, 544, 1013
Hpy166II	GTNNAC	3 cut(s)	175, 217, 717
Hpy188I	TCNGA	3 cut(s)	355, 475, 566
Hpy188III	TCNNGA	4 cut(s)	191, 278, 446, 740
Hpy8I	GTNNAC	3 cut(s)	175, 217, 717
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	5 cut(s)	16, 329, 605, 648, 1043
HpyCH4III	ACNGT	2 cut(s)	865, 1020
HpyCH4IV	ACGT	1 cut(s)	752
HpyCH4V	TGCA	2 cut(s)	212, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	294, 460, 937, 971, 980
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	752
Hsp92II	CATG	2 cut(s)	559, 715
HspAI	GCGC	3 cut(s)	463, 670, 875
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	899
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	358, 632
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	752
MaeIII	GTNAC	2 cut(s)	244, 550
MalI	GATC	1 cut(s)	568
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	1 cut(s)	566
MflI	RGATCY	1 cut(s)	566
MluCI	AATT	8 cut(s)	658, 684, 704, 818, 889, 1064, 1121, 1141
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	809, 1098
MroI	TCCGGA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	2 cut(s)	657, 942
MspI	CCGG	2 cut(s)	204, 446
MspR9I	CCNGG	2 cut(s)	540, 921
MvaI	CCWGG	2 cut(s)	540, 921
MvnI	CGCG	2 cut(s)	670, 672
MwoI	GCNNNNNNNGC	5 cut(s)	294, 460, 937, 971, 980
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	2 cut(s)	559, 715
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	2 cut(s)	244, 550
NspV	TTCGAA	2 cut(s)	597, 841
PasI	CCCWGGG	1 cut(s)	920
PdmI	GAANNNNTTC	1 cut(s)	1068
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PshAI	GACNNNNGTC	1 cut(s)	768
PshBI	ATTAAT	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	538, 919
PspFI	CCCAGC	1 cut(s)	618
PspGI	CCWGG	2 cut(s)	538, 919
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	3 cut(s)	468, 545, 923
PsuI	RGATCY	1 cut(s)	566
RsaI	GTAC	2 cut(s)	399, 854
RsaNI	GTAC	2 cut(s)	398, 853
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	657, 942
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	3 cut(s)	468, 545, 923
ScaI	AGTACT	1 cut(s)	854
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	540, 921
SfaNI	GCATC	2 cut(s)	358, 632
SfuI	TTCGAA	2 cut(s)	597, 841
SinI	GGWCC	1 cut(s)	545
Sse9I	AATT	8 cut(s)	658, 684, 704, 818, 889, 1064, 1121, 1141
SsiI	CCGC	4 cut(s)	64, 99, 295, 314
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	538, 919
StyI	CCWWGG	3 cut(s)	387, 789, 926
TaaI	ACNGT	2 cut(s)	865, 1020
TaiI	ACGT	1 cut(s)	755
TasI	AATT	8 cut(s)	658, 684, 704, 818, 889, 1064, 1121, 1141
TatI	WGTACW	1 cut(s)	852
Tru1I	TTAA	2 cut(s)	657, 942
Tru9I	TTAA	2 cut(s)	657, 942
TscAI	CASTG	3 cut(s)	253, 834, 1065
TseFI	GTSAC	2 cut(s)	244, 550
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	244, 550
TspDTI	ATGAA	4 cut(s)	352, 618, 624, 643
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	3 cut(s)	253, 834, 1065
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	1 cut(s)	1064
XmiI	GTMKAC	2 cut(s)	174, 216
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.