Rh2BG366700

Protein LOW PSII ACCUMULATION 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008650
Physical Location & Seq
Reverse (-)
51008202 .. 51013644
5443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG366700.1

Sequence Viewer

Length: 867 bp
ATGGCCTTCTCCTCTTCCACTCTCTCCCCACATTGCTCCACTCAACACCCTCTCATTCTCCCCCGCACTCCTCTCTCTTCACTACCCAAAACCACCACCGCCACTTTCTTCACAACCTCATCATCATTCCGAGCTCTCCCACTCAACACCAGCACAAGAATCCAATGCGTCGACAAAGCTTCGAGTCTTGACCCCAAGACCGGCGTCGCAGTCTACAAGCCCAAGTCGTATGAAGTTCTCGTTACTGACGCTGCGAATTCACTTGCCTATGCTCTTGAAGATGGCAAGACCCGCTTGGAGATTGATTTCCCGCCCCTTCCTAGCAACATATCTTCCTATAAGGGGTCTTCAGATGACTTCATTGATGCCAATGTTCAACTCGCCTTGACTGTTGTAAGGAAGCTGAAAGAGAGAAAGGAGATGAAAGTTTGTATTGTGTTTCCAGATAAGCCAGAAAGGCGCAGGGCTTCTGAGATGTTTAAAACAGCTATTGACTCGATTGGTGATCTAACCATAGCTTCCCTCGATGATGTTCCTGGTGGTCCAGTCACCATGTTCTTCAGATCCATAAGGAACACACTTGATTTTGATTTCGAAGATGAAAATGAAGGTCGCTGGGCATCCAATGAGCCTCCTTCTCTTTATATGTTCATTAATTGTAGCACGCGCGAACTTGCTGGAATTGAGAAGTTTGTGGAACAATTTGCCATGTCAACCCCAGCACTTCTATTCAATCTTGAACTCGACACATTGCGTGCTGACTTGGGCCTTGTGGGCTTTCCAACCAAGGATTTGCATTATCGATTTCTTTCACAATTTATTCCAGTGTTCTACATTCGAATAAGAGAGTACTCGAAGGTAAATTAA

Protein Analysis

288

Amino Acids

32.28

Weight (kDa)

6.01

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 74 - 285 2.1e-30 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 171, 213
AccII CGCG 2 cut(s) 667, 669
AciI CCGC 4 cut(s) 64, 99, 292, 311
AclWI GGATC 1 cut(s) 558
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 333, 544
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 2 cut(s) 200, 342
AgsI TTSAA 4 cut(s) 278, 377, 733, 740
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 5 cut(s) 134, 179, 403, 488, 518
AluI AGCT 5 cut(s) 134, 179, 403, 488, 518
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 1 cut(s) 558
AoxI GGCC 2 cut(s) 3, 766
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 256
AseI ATTAAT 1 cut(s) 654
AspLEI GCGC 2 cut(s) 462, 669
AspS9I GGNCC 2 cut(s) 542, 766
AsuHPI GGTGA 2 cut(s) 515, 541
AsuII TTCGAA 2 cut(s) 594, 838
AvaII GGWCC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 537
BfaI CTAG 1 cut(s) 321
BglI GCCNNNNNGGC 2 cut(s) 457, 774
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 542, 766
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 355, 629
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 339
Bpu14I TTCGAA 2 cut(s) 594, 838
Bsa29I ATCGAT 1 cut(s) 802
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 786
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 342
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 545, 824
Bse3DI GCAATG 2 cut(s) 31, 749
BseBI CCWGG 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 802
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 1 cut(s) 620
BseLI CCNNNNNNNGG 2 cut(s) 200, 342
BseMI GCAATG 2 cut(s) 31, 749
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 545, 824
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 2 cut(s) 615, 718
Bsh1236I CGCG 2 cut(s) 667, 669
BshFI GGCC 2 cut(s) 5, 768
BshVI ATCGAT 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 200, 342
BsnI GGCC 2 cut(s) 5, 768
Bsp119I TTCGAA 2 cut(s) 594, 838
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 505, 563
BspACI CCGC 4 cut(s) 64, 99, 292, 311
BspANI GGCC 2 cut(s) 5, 768
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 802
BspFNI CGCG 2 cut(s) 667, 669
BspPI GGATC 1 cut(s) 558
BspT104I TTCGAA 2 cut(s) 594, 838
BsrDI GCAATG 2 cut(s) 31, 749
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 545, 824
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 786
BssMI GATC 2 cut(s) 505, 563
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 786
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 19, 82
BstACI GRCGYC 1 cut(s) 204
BstBI TTCGAA 2 cut(s) 594, 838
BstC8I GCNNGC 2 cut(s) 665, 756
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 620
BstFNI CGCG 2 cut(s) 667, 669
BstHHI GCGC 2 cut(s) 462, 669
BstKTI GATC 2 cut(s) 508, 566
BstMBI GATC 2 cut(s) 505, 563
BstMWI GCNNNNNNNGC 3 cut(s) 291, 457, 774
BstNI CCWGG 1 cut(s) 537
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 535
BstUI CGCG 2 cut(s) 667, 669
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
Bsu15I ATCGAT 1 cut(s) 802
BsuRI GGCC 2 cut(s) 5, 768
BsuTUI ATCGAT 1 cut(s) 802
BtsCI GGATG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 2 cut(s) 665, 756
CfoI GCGC 2 cut(s) 462, 669
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 542, 766
ClaI ATCGAT 1 cut(s) 802
CseI GACGC 3 cut(s) 157, 193, 257
Csp6I GTAC 1 cut(s) 850
CviAII CATG 2 cut(s) 553, 709
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 507, 565
DpnII GATC 2 cut(s) 505, 563
DraI TTTAAA 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 19, 82
EarI CTCTTC 2 cut(s) 19, 82
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 333, 544
EcoICRI GAGCTC 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 786
FaeI CATG 2 cut(s) 556, 712
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 2 cut(s) 552, 708
FauI CCCGC 3 cut(s) 71, 299, 318
FblI GTMKAC 2 cut(s) 171, 213
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 607
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 461, 668
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 2 cut(s) 619, 722
HaeIII GGCC 2 cut(s) 5, 768
HapII CCGG 1 cut(s) 201
HgaI GACGC 3 cut(s) 157, 193, 257
HhaI GCGC 2 cut(s) 462, 669
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 556, 712
Hin6I GCGC 2 cut(s) 460, 667
HinP1I GCGC 2 cut(s) 460, 667
HincII GTYRAC 2 cut(s) 172, 714
HindII GTYRAC 2 cut(s) 172, 714
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 3 cut(s) 159, 184, 494
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 515, 541
Hpy166II GTNNAC 3 cut(s) 172, 214, 714
Hpy188I TCNGA 4 cut(s) 131, 352, 472, 563
Hpy188III TCNNGA 4 cut(s) 188, 275, 443, 737
Hpy8I GTNNAC 3 cut(s) 172, 214, 714
Hpy99I CGWCG 2 cut(s) 173, 209
HpyAV CCTTC 5 cut(s) 16, 326, 602, 645, 850
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 1 cut(s) 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 457, 774
HpyF3I CTNAG 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 556, 712
HspAI GCGC 2 cut(s) 460, 667
Kzo9I GATC 2 cut(s) 505, 563
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 355, 629
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 241, 547
MalI GATC 2 cut(s) 507, 565
MboI GATC 2 cut(s) 505, 563
MboII GAAGA 8 cut(s) 6, 69, 100, 290, 324, 339, 550, 608
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 6 cut(s) 256, 655, 681, 701, 815, 862
MlyI GAGTC 2 cut(s) 193, 488
MmeI TCCRAC 1 cut(s) 806
MnlI CCTC 6 cut(s) 22, 60, 81, 127, 533, 642
MseI TTAA 3 cut(s) 480, 654, 865
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 2 cut(s) 667, 669
MwoI GCNNNNNNNGC 3 cut(s) 291, 457, 774
NdeII GATC 2 cut(s) 505, 563
NlaIII CATG 2 cut(s) 556, 712
NmuCI GTSAC 1 cut(s) 547
NspV TTCGAA 2 cut(s) 594, 838
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 192, 488
PpsI GAGTC 2 cut(s) 192, 488
PshAI GACNNNNGTC 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 2 cut(s) 615, 718
PspGI CCWGG 1 cut(s) 535
PspPI GGNCC 2 cut(s) 542, 766
PsuI RGATCY 1 cut(s) 563
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
SacI GAGCTC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 480, 654, 865
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 505, 563
Sau96I GGNCC 2 cut(s) 542, 766
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 2 cut(s) 193, 488
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 136
SetI ASST 8 cut(s) 119, 136, 181, 405, 490, 520, 613, 861
SfaNI GCATC 2 cut(s) 355, 629
SfuI TTCGAA 2 cut(s) 594, 838
SinI GGWCC 1 cut(s) 542
Sse9I AATT 6 cut(s) 256, 655, 681, 701, 815, 862
SsiI CCGC 4 cut(s) 64, 99, 292, 311
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 1 cut(s) 786
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 9 cut(s) 171, 182, 497, 525, 594, 744, 802, 838, 854
TasI AATT 6 cut(s) 256, 655, 681, 701, 815, 862
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 3 cut(s) 480, 654, 865
Tru9I TTAA 3 cut(s) 480, 654, 865
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 6 cut(s) 246, 349, 437, 615, 621, 640
TspRI CASTG 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 542
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 1 cut(s) 256
XmiI GTMKAC 2 cut(s) 171, 213
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.