Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Forward (+)

3697630 .. 3703068

Gene Structure 5439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03370.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTGTGGAGCAAGAGCAGAGTCCTTCAAATTCCTTATCATCATTCGTCTAATAATCCATTTCGGTTTCTTTTCCCTCCACCTCTCTCCCGCACACCAAAATCCCCAAAACACTGAGATGGCCATGGCCATGGCCTTGTCATCAACACCTCGCATTCTCTCTCCTTATTGCCCAACTCACCACTCAATTCTGTCTCACACTTCTCTCTCTTCCTTACCCAGGACTGGCACCACCCTCTCCGCCTTCTCAACTTCTCCAGCGCTTCCGAAATCTCCATCGAATAGCAGAAGCATCAAGTGCGTCGATAAGGCCTCTTCGGCTTCGAGGGCCGATCCAACGTCTGGAATTGCAGTCTACAAGCCAAAGTCCTATGAAGTTCTCGTTACTGATGCTGCAAGATCGCTTGCTTATGCTCTCGAAGACGGGAAGACCCGCTTGGAGATTGATTTCCCTCCCCTGCCTAGCGACATATCTTCTTATAAGGGGTCTTCAGATGAATTCATTGATGCGAACGTACAACTTGTCTTGGCTGTTGTAAGGAAGCTCAAAGAAATAAGGGAAACAAGAGCTTGCATTGTGTTTCCTGATAAGCCAGAAAAGCGCAGGGCCTCTGAGCAGTTCAAAACGGCTATCGACTCACTCGATGATATAACAATAGGTTCCCTGGATGATGTCCCCAGTGGTCCAGTCACCAAGTTCTTCCAATCTATAAGGGACACACTTGATTTTGACTTTGAAGATGAAAATGAAGGTCGCTGGGCATCCAGTCAACCTCCCTCTCTTTATATATTCATAAATTGTAGCACTCGTGAGCTTGCTCCAATAGAGAAGTATGTGGAAACATTTGCCATGTCGACCCCAACACTTCTATTTAATCTTGAACTAGACACATTGCGTGCTGACTTGGGCCTTTTTGGCTTTCCAACCAAAGATTTGCACTATCGCTTTCTTTCTCAATTTACACCAGTGTTCTATATCCGAATAAGAGATTACTCAAAGACAGTAGCAGTAGCGCCTTATATAGTGAATTACAGTGGAGCACTATTTCGCCAATACCCTGGGCCTTGGCAGGTAATGCTAAAACAAGCCGATGGTTCTTATGCTTGCGTAGCAGAGAGTGCAACACGCTTTACTCTGGGCGAAACAAAAGAAGAACTTTTGAGGGTCCTGGGACTGCAAGAGGAACAAGGAAGCTCGCTGCAATTTCTTCGTAGAGGCTACAGGAGTGCTACTTGGTGGGAAGAAGATGTGGAGTTGGAAGAATCTTCTGCTTGGCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

428

Amino Acids

47.89

Weight (kDa)

5.77

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	1060
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	354, 854
AciI	CCGC	3 cut(s)	90, 240, 433
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	120, 126
AcsI	RAATTY	2 cut(s)	29, 497
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	516
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	219, 224, 341
AgsI	TTSAA	4 cut(s)	28, 622, 737, 881
AjnI	CCWGG	4 cut(s)	218, 663, 1057, 1167
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	4 cut(s)	544, 569, 814, 1194
AluI	AGCT	4 cut(s)	544, 569, 814, 1194
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	8 cut(s)	120, 126, 132, 309, 327, 606, 907, 1061
ApeKI	GCWGC	2 cut(s)	392, 1198
ApoI	RAATTY	2 cut(s)	29, 497
AspLEI	GCGC	3 cut(s)	262, 603, 1015
AspS9I	GGNCC	6 cut(s)	327, 606, 683, 907, 1061, 1165
AsuHPI	GGTGA	2 cut(s)	170, 682
AvaII	GGWCC	2 cut(s)	683, 1165
BalI	TGGCCA	2 cut(s)	122, 128
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	807
BbsI	GAAGAC	3 cut(s)	426, 434, 480
Bbv12I	GWGCWC	1 cut(s)	1042
BbvI	GCAGC	2 cut(s)	379, 1185
BccI	CCATC	3 cut(s)	112, 283, 1085
BceAI	ACGGC	1 cut(s)	642
BcgI	CGANNNNNNTGC	2 cut(s)	1190, 1224
BciT130I	CCWGG	4 cut(s)	220, 665, 1059, 1169
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	462, 884
BfmI	CTRYAG	1 cut(s)	1219
BfoI	RGCGCY	2 cut(s)	263, 1016
BfuAI	ACCTGC	1 cut(s)	1060
BglI	GCCNNNNNGGC	2 cut(s)	317, 915
BisI	GCNGC	2 cut(s)	393, 1199
BlsI	GCNGC	2 cut(s)	394, 1200
Bme1390I	CCNGG	4 cut(s)	220, 665, 1059, 1169
Bme18I	GGWCC	2 cut(s)	683, 1165
BmgT120I	GGNCC	6 cut(s)	327, 606, 683, 907, 1061, 1165
BmiI	GGNNCC	3 cut(s)	229, 661, 1166
BmrFI	CCNGG	4 cut(s)	220, 665, 1059, 1169
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	4 cut(s)	300, 379, 496, 770
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	3 cut(s)	426, 434, 480
BpmI	CTGGAG	1 cut(s)	240
BsaJI	CCNNGG	8 cut(s)	123, 129, 218, 663, 1057, 1058, 1064, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 224, 341
Bse1I	ACTGG	5 cut(s)	229, 678, 686, 765, 965
Bse3DI	GCAATG	1 cut(s)	890
BseBI	CCWGG	4 cut(s)	220, 665, 1059, 1169
BseDI	CCNNGG	8 cut(s)	123, 129, 218, 663, 1057, 1058, 1064, 1168
BseGI	GGATG	2 cut(s)	673, 761
BseLI	CCNNNNNNNGG	3 cut(s)	219, 224, 341
BseMI	GCAATG	1 cut(s)	890
BseMII	CTCAG	2 cut(s)	105, 603
BseNI	ACTGG	5 cut(s)	229, 678, 686, 765, 965
BseXI	GCAGC	2 cut(s)	379, 1185
BseYI	CCCAGC	1 cut(s)	756
BshFI	GGCC	8 cut(s)	122, 128, 134, 311, 329, 608, 909, 1063
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	1042
BslFI	GGGAC	3 cut(s)	659, 728, 1185
BslI	CCNNNNNNNGG	3 cut(s)	219, 224, 341
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	3 cut(s)	659, 728, 1185
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	8 cut(s)	122, 128, 134, 311, 329, 608, 909, 1063
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	2 cut(s)	331, 398
Bsp19I	CCATGG	2 cut(s)	123, 129
BspACI	CCGC	3 cut(s)	90, 240, 433
BspANI	GGCC	8 cut(s)	122, 128, 134, 311, 329, 608, 909, 1063
BspCNI	CTCAG	2 cut(s)	106, 604
BspLI	GGNNCC	3 cut(s)	229, 661, 1166
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	890
BsrI	ACTGG	5 cut(s)	229, 678, 686, 765, 965
BssECI	CCNNGG	8 cut(s)	123, 129, 218, 663, 1057, 1058, 1064, 1168
BssMI	GATC	2 cut(s)	331, 398
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	3 cut(s)	123, 129, 1064
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	4 cut(s)	220, 665, 1059, 1169
Bst4CI	ACNGT	2 cut(s)	1003, 1034
Bst6I	CTCTTC	2 cut(s)	214, 319
BstAPI	GCANNNNNTGC	3 cut(s)	297, 1075, 1118
BstC8I	GCNNGC	6 cut(s)	405, 571, 816, 897, 1105, 1196
BstDEI	CTNAG	2 cut(s)	114, 612
BstDSI	CCRYGG	2 cut(s)	123, 129
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	673, 761
BstH2I	RGCGCY	2 cut(s)	263, 1016
BstHHI	GCGC	3 cut(s)	262, 603, 1015
BstKTI	GATC	2 cut(s)	334, 401
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	331, 398
BstMWI	GCNNNNNNNGC	8 cut(s)	297, 317, 326, 598, 915, 1075, 1109, 1118
BstNI	CCWGG	4 cut(s)	220, 665, 1059, 1169
BstSCI	CCNGG	4 cut(s)	218, 663, 1057, 1167
BstSFI	CTRYAG	1 cut(s)	1219
BstV1I	GCAGC	2 cut(s)	379, 1185
BstV2I	GAAGAC	3 cut(s)	426, 434, 480
BstXI	CCANNNNNNTGG	2 cut(s)	130, 1058
BsuRI	GGCC	8 cut(s)	122, 128, 134, 311, 329, 608, 909, 1063
BtgI	CCRYGG	2 cut(s)	123, 129
BtsCI	GGATG	2 cut(s)	673, 761
BtsIMutI	CAGTG	4 cut(s)	111, 685, 972, 1039
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	6 cut(s)	405, 571, 816, 897, 1105, 1196
CfoI	GCGC	3 cut(s)	262, 603, 1015
Cfr13I	GGNCC	6 cut(s)	327, 606, 683, 907, 1061, 1165
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	3 cut(s)	124, 130, 850
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	2 cut(s)	114, 612
DpnI	GATC	2 cut(s)	333, 400
DpnII	GATC	2 cut(s)	331, 398
EaeI	YGGCCR	2 cut(s)	120, 126
Eam1104I	CTCTTC	2 cut(s)	214, 319
EarI	CTCTTC	2 cut(s)	214, 319
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	3 cut(s)	123, 129, 1064
Eco147I	AGGCCT	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	683, 1165
Eco47III	AGCGCT	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	606, 1165
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	4 cut(s)	218, 663, 1057, 1167
EcoT14I	CCWWGG	3 cut(s)	123, 129, 1064
ErhI	CCWWGG	3 cut(s)	123, 129, 1064
FaeI	CATG	3 cut(s)	127, 133, 853
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 1140, 1172
FaqI	GGGAC	3 cut(s)	659, 728, 1185
FatI	CATG	3 cut(s)	123, 129, 849
FauI	CCCGC	2 cut(s)	97, 440
FblI	GTMKAC	2 cut(s)	354, 854
Fnu4HI	GCNGC	2 cut(s)	393, 1199
FokI	GGATG	2 cut(s)	680, 748
Fsp4HI	GCNGC	2 cut(s)	393, 1199
FspBI	CTAG	2 cut(s)	462, 884
GlaI	GCGC	3 cut(s)	261, 602, 1014
GluI	GCNGC	2 cut(s)	393, 1199
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	2 cut(s)	263, 1016
HaeIII	GGCC	8 cut(s)	122, 128, 134, 311, 329, 608, 909, 1063
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	3 cut(s)	262, 603, 1015
Hin1II	CATG	3 cut(s)	127, 133, 853
Hin6I	GCGC	3 cut(s)	260, 601, 1013
HinP1I	GCGC	3 cut(s)	260, 601, 1013
HincII	GTYRAC	2 cut(s)	770, 855
HindII	GTYRAC	2 cut(s)	770, 855
HinfI	GANTC	3 cut(s)	20, 635, 1262
HphI	GGTGA	2 cut(s)	170, 682
Hpy166II	GTNNAC	3 cut(s)	355, 770, 855
Hpy188I	TCNGA	4 cut(s)	267, 493, 613, 980
Hpy188III	TCNNGA	5 cut(s)	342, 416, 584, 809, 878
Hpy8I	GTNNAC	3 cut(s)	355, 770, 855
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	34, 253, 743
HpyCH4III	ACNGT	2 cut(s)	1003, 1034
HpyCH4IV	ACGT	2 cut(s)	338, 513
HpyCH4V	TGCA	7 cut(s)	350, 395, 573, 937, 1121, 1177, 1201
HpyF10VI	GCNNNNNNNGC	8 cut(s)	297, 317, 326, 598, 915, 1075, 1109, 1118
HpyF3I	CTNAG	2 cut(s)	114, 612
HpySE526I	ACGT	2 cut(s)	338, 513
Hsp92II	CATG	3 cut(s)	127, 133, 853
HspAI	GCGC	3 cut(s)	260, 601, 1013
Kzo9I	GATC	2 cut(s)	331, 398
LmnI	GCTCC	3 cut(s)	8, 823, 1037
Lsp1109I	GCAGC	2 cut(s)	379, 1185
LweI	GCATC	4 cut(s)	300, 379, 496, 770
MaeI	CTAG	2 cut(s)	462, 884
MaeII	ACGT	2 cut(s)	338, 513
MaeIII	GTNAC	2 cut(s)	382, 688
MalI	GATC	2 cut(s)	333, 400
MboI	GATC	2 cut(s)	331, 398
MhlI	GDGCHC	1 cut(s)	1042
MlsI	TGGCCA	2 cut(s)	122, 128
MluCI	AATT	9 cut(s)	29, 186, 345, 497, 796, 956, 1027, 1202, 1279
MluNI	TGGCCA	2 cut(s)	122, 128
MlyI	GAGTC	2 cut(s)	29, 629
MmeI	TCCRAC	3 cut(s)	359, 947, 1236
Mox20I	TGGCCA	2 cut(s)	122, 128
MscI	TGGCCA	2 cut(s)	122, 128
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	2 cut(s)	116, 128
Msp20I	TGGCCA	2 cut(s)	122, 128
MspR9I	CCNGG	4 cut(s)	220, 665, 1059, 1169
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	4 cut(s)	220, 665, 1059, 1169
MwoI	GCNNNNNNNGC	8 cut(s)	297, 317, 326, 598, 915, 1075, 1109, 1118
NcoI	CCATGG	2 cut(s)	123, 129
NdeII	GATC	2 cut(s)	331, 398
NlaIII	CATG	3 cut(s)	127, 133, 853
NlaIV	GGNNCC	3 cut(s)	229, 661, 1166
NmuCI	GTSAC	1 cut(s)	688
PasI	CCCWGGG	1 cut(s)	1058
PceI	AGGCCT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	1262
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	394, 1200
PleI	GAGTC	2 cut(s)	28, 629
PpsI	GAGTC	2 cut(s)	28, 629
PpuMI	RGGWCCY	1 cut(s)	1165
PsiI	TTATAA	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	1165
Psp6I	CCWGG	4 cut(s)	218, 663, 1057, 1167
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	4 cut(s)	218, 663, 1057, 1167
PspN4I	GGNNCC	3 cut(s)	229, 661, 1166
PspPI	GGNCC	6 cut(s)	327, 606, 683, 907, 1061, 1165
PspPPI	RGGWCCY	1 cut(s)	1165
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	2 cut(s)	116, 128
SalI	GTCGAC	1 cut(s)	853
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	2 cut(s)	393, 1199
Sau3AI	GATC	2 cut(s)	331, 398
Sau96I	GGNCC	6 cut(s)	327, 606, 683, 907, 1061, 1165
SchI	GAGTC	2 cut(s)	29, 629
ScrFI	CCNGG	4 cut(s)	220, 665, 1059, 1169
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	4 cut(s)	300, 379, 496, 770
SfcI	CTRYAG	1 cut(s)	1219
SinI	GGWCC	2 cut(s)	683, 1165
SmiMI	CAYNNNNRTG	2 cut(s)	116, 128
Sse9I	AATT	9 cut(s)	29, 186, 345, 497, 796, 956, 1027, 1202, 1279
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	90, 240, 433
SspMI	CTAG	2 cut(s)	462, 884
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	218, 663, 1057, 1167
StyI	CCWWGG	3 cut(s)	123, 129, 1064
TaaI	ACNGT	2 cut(s)	1003, 1034
TaiI	ACGT	2 cut(s)	341, 516
TaqI	TCGA	7 cut(s)	278, 303, 323, 417, 633, 642, 854
TasI	AATT	9 cut(s)	29, 186, 345, 497, 796, 956, 1027, 1202, 1279
TfiI	GAWTC	1 cut(s)	1262
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	4 cut(s)	118, 685, 972, 1039
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	2 cut(s)	392, 1198
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	6 cut(s)	387, 490, 510, 756, 762, 781
TspRI	CASTG	4 cut(s)	118, 685, 972, 1039
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	683, 1165
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	2 cut(s)	29, 497
XmiI	GTMKAC	2 cut(s)	354, 854
XspI	CTAG	2 cut(s)	462, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.