Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Forward (+)

35032199 .. 35039752

Gene Structure 7554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCAAGTGGACCAGTTAGACGTGTCTCACGTCAAGATATACAACTGGTGCAAAACCTTATTGAGCGATGCCTTCAGCTTTACATGAACCAGAAGGAAGTGGTGGAAACTCTACTGGAACAAGCGAAAATAGAGCCTGGTTTCACGGAACTTGTTTGGCAGAAGCTTGAGGAAGAGAATCGAGAATTCTTCAGGGCTTATTACCTGAGGTTAATGGTAAAGCAACAAATAATAGAATATAACAGGTTGCTTGAACAACAGGCGCGGTTGATGCACCAGTTACACTCGACTGGAGTTTCTTCAATTCCTACCTCCAATGGATCTCATATCCCATCGATGCATCAAAACTCAACATGCTATCCCCCAGACAGTGTGGGACCAGCATTGAAGACAGAAAACTTACACCATCAAGTTGGTTCCTGCTTACCTAATCCATTCACTAATGGCGCGTCTTCATTGCACAATAGTATGGAGAATGCTGTTAAAATGTCTGCTCATGCCAACAGGATTGATGTCCCACCAAACATGCTTTCGACTCAGAGCACCAACATGGGGGGGCTGATGCAAGGAATAAATGGGGGAATTATAAAATCAGAAGTTGGATATTCAGGCACTTCTTACATGTATGGTGGTGATGGCAGCAACCTGGAAACACGGCCCAATATGGGAGATGCTTCTGTTGCACCTTTCAATAGCGTAGAGTCCAATTCACAACCCCTAAATGAATCACTTCTTGATTCAGACTCTTCCTCGTTTGGTTTATTAAGTCAGATTCCTCGAAGTTTCAGCCTCTCAGATTTGACATTAGATTTTTCTCAGAGTTCAGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCTACAGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGGACACCATTTCAGAAGGCGTGAGTTATGAAGATTTTGGCAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

324

Amino Acids

36.1

Weight (kDa)

4.92

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	17 - 68	5.7e-26	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccII	CGCG	2 cut(s)	265, 449
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	59, 175
AfiI	CCNNNNNNNGG	2 cut(s)	552, 665
AflIII	ACRYGT	2 cut(s)	22, 621
AgsI	TTSAA	4 cut(s)	254, 303, 388, 691
AjiI	CACGTC	2 cut(s)	23, 32
AjnI	CCWGG	2 cut(s)	136, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	3 cut(s)	79, 166, 840
AluI	AGCT	3 cut(s)	79, 166, 840
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	3 cut(s)	31, 894, 906
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	639
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	2 cut(s)	265, 449
AspS9I	GGNCC	3 cut(s)	11, 377, 657
AsuHPI	GGTGA	2 cut(s)	644, 843
AvaII	GGWCC	2 cut(s)	11, 377
AxyI	CCTNAGG	1 cut(s)	206
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	2 cut(s)	395, 444
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	3 cut(s)	340, 414, 629
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	138, 647
BcoDI	GTCTC	3 cut(s)	31, 894, 906
BfmI	CTRYAG	1 cut(s)	864
BisI	GCNGC	1 cut(s)	640
BlsI	GCNGC	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	138, 647
Bme18I	GGWCC	2 cut(s)	11, 377
BmgBI	CACGTC	2 cut(s)	23, 32
BmgT120I	GGNCC	3 cut(s)	11, 377, 657
BmiI	GGNNCC	2 cut(s)	378, 418
BmrFI	CCNGG	2 cut(s)	138, 647
BmsI	GCATC	6 cut(s)	59, 261, 327, 349, 552, 661
BpiI	GAAGAC	2 cut(s)	395, 444
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 665
Bse1I	ACTGG	5 cut(s)	14, 51, 120, 277, 295
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	138, 647
BseCI	ATCGAT	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	552, 665
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	4 cut(s)	197, 551, 807, 830
BseNI	ACTGG	5 cut(s)	14, 51, 120, 277, 295
BseXI	GCAGC	1 cut(s)	651
Bsh1236I	CGCG	2 cut(s)	265, 449
BshFI	GGCC	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	390, 500
BslI	CCNNNNNNNGG	2 cut(s)	552, 665
BsmAI	GTCTC	3 cut(s)	31, 894, 906
BsmFI	GGGAC	2 cut(s)	390, 500
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	320, 848
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	4 cut(s)	198, 550, 806, 829
BspDI	ATCGAT	1 cut(s)	335
BspFNI	CGCG	2 cut(s)	265, 449
BspLI	GGNNCC	2 cut(s)	378, 418
BspPI	GGATC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	5 cut(s)	14, 51, 120, 277, 295
BssMI	GATC	2 cut(s)	320, 848
BssSI	CACGAG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	138, 647
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	168, 751
BstDEI	CTNAG	4 cut(s)	206, 537, 793, 816
BstFNI	CGCG	2 cut(s)	265, 449
BstHHI	GCGC	2 cut(s)	265, 449
BstKTI	GATC	2 cut(s)	323, 851
BstMAI	GTCTC	3 cut(s)	31, 894, 906
BstMBI	GATC	2 cut(s)	320, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 680
BstNI	CCWGG	2 cut(s)	138, 647
BstNSI	RCATGY	3 cut(s)	357, 529, 625
BstSCI	CCNGG	2 cut(s)	136, 645
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	2 cut(s)	265, 449
BstV1I	GCAGC	1 cut(s)	651
BstV2I	GAAGAC	2 cut(s)	395, 444
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	320
Bsu15I	ATCGAT	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	658
BsuTUI	ATCGAT	1 cut(s)	335
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	2 cut(s)	23, 32
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	2 cut(s)	376, 973
CfoI	GCGC	2 cut(s)	265, 449
Cfr13I	GGNCC	3 cut(s)	11, 377, 657
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	438
CviAII	CATG	7 cut(s)	85, 354, 497, 526, 550, 622, 883
DdeI	CTNAG	4 cut(s)	206, 537, 793, 816
DpnI	GATC	2 cut(s)	322, 850
DpnII	GATC	2 cut(s)	320, 848
Eam1104I	CTCTTC	2 cut(s)	168, 751
EarI	CTCTTC	2 cut(s)	168, 751
Eco47I	GGWCC	2 cut(s)	11, 377
Eco57I	CTGAAG	2 cut(s)	59, 175
Eco81I	CCTNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	136, 645
EcoT22I	ATGCAT	1 cut(s)	342
FaeI	CATG	7 cut(s)	88, 357, 500, 529, 553, 625, 886
FaqI	GGGAC	2 cut(s)	390, 500
FatI	CATG	7 cut(s)	84, 353, 496, 525, 549, 621, 882
Fnu4HI	GCNGC	1 cut(s)	640
Fsp4HI	GCNGC	1 cut(s)	640
GlaI	GCGC	2 cut(s)	264, 448
GluI	GCNGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	658
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	265, 449
Hin1II	CATG	7 cut(s)	88, 357, 500, 529, 553, 625, 886
Hin6I	GCGC	2 cut(s)	263, 447
HinP1I	GCGC	2 cut(s)	263, 447
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	8 cut(s)	178, 535, 701, 725, 737, 743, 772, 887
HphI	GGTGA	2 cut(s)	644, 843
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	8 cut(s)	540, 595, 742, 771, 796, 819, 826, 940
Hpy188III	TCNNGA	4 cut(s)	35, 182, 734, 893
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	83, 88, 935
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	22, 31
HpyCH4V	TGCA	6 cut(s)	52, 274, 340, 460, 565, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 680
HpyF3I	CTNAG	4 cut(s)	206, 537, 793, 816
HpySE526I	ACGT	2 cut(s)	22, 31
Hsp92II	CATG	7 cut(s)	88, 357, 500, 529, 553, 625, 886
HspAI	GCGC	2 cut(s)	263, 447
Kzo9I	GATC	2 cut(s)	320, 848
Lsp1109I	GCAGC	1 cut(s)	651
LweI	GCATC	6 cut(s)	59, 261, 327, 349, 552, 661
MaeII	ACGT	2 cut(s)	22, 31
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	322, 850
MboI	GATC	2 cut(s)	320, 848
MboII	GAAGA	7 cut(s)	181, 185, 291, 400, 444, 738, 968
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	4 cut(s)	185, 303, 582, 706
MlyI	GAGTC	4 cut(s)	529, 710, 737, 896
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	7 cut(s)	163, 201, 322, 760, 786, 800, 855
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	3 cut(s)	212, 483, 764
MslI	CAYNNNNRTG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	138, 647
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	138, 647
MvnI	CGCG	2 cut(s)	265, 449
MwoI	GCNNNNNNNGC	2 cut(s)	271, 680
NdeII	GATC	2 cut(s)	320, 848
NlaIII	CATG	7 cut(s)	88, 357, 500, 529, 553, 625, 886
NlaIV	GGNNCC	2 cut(s)	378, 418
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	3 cut(s)	357, 529, 625
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	178, 725, 737, 772
PkrI	GCNGC	1 cut(s)	641
PleI	GAGTC	4 cut(s)	529, 709, 737, 895
PpsI	GAGTC	4 cut(s)	529, 709, 737, 895
PscI	ACATGT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	136, 645
PspGI	CCWGG	2 cut(s)	136, 645
PspN4I	GGNNCC	2 cut(s)	378, 418
PspPI	GGNCC	3 cut(s)	11, 377, 657
PsuI	RGATCY	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	212, 483, 764
SatI	GCNGC	1 cut(s)	640
Sau3AI	GATC	2 cut(s)	320, 848
Sau96I	GGNCC	3 cut(s)	11, 377, 657
SchI	GAGTC	4 cut(s)	529, 710, 737, 896
ScrFI	CCNGG	2 cut(s)	138, 647
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	6 cut(s)	59, 261, 327, 349, 552, 661
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	2 cut(s)	11, 377
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	185, 303, 582, 706
SsiI	CCGC	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	136, 645
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	25, 34
TaqI	TCGA	6 cut(s)	181, 287, 335, 533, 778, 847
TasI	AATT	4 cut(s)	185, 303, 582, 706
TfiI	GAWTC	4 cut(s)	178, 725, 737, 772
Tru1I	TTAA	3 cut(s)	212, 483, 764
Tru9I	TTAA	3 cut(s)	212, 483, 764
TscAI	CASTG	2 cut(s)	376, 973
TseI	GCWGC	1 cut(s)	639
TspDTI	ATGAA	6 cut(s)	101, 444, 738, 871, 888, 969
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	376, 973
VpaK11BI	GGWCC	2 cut(s)	11, 377
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	3 cut(s)	357, 529, 625
XmnI	GAANNNNTTC	1 cut(s)	729
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.