Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Reverse (-)

55387419 .. 55392604

Gene Structure 5186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG383700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCTTCTCCTCTTCCACTCTCTCCCCACATTGCTCCACCCAACACCCTCTCATTCTCTCCCGCACTCCTCTCTCTTCACTACCCAAAACCACCACCGCCACTTTCTTCACAACCTCATCATCATTCCGAGCTCTCCCACTCAACACCAGCACAAGAATCCAATGCGTCGACAAAGCTTCAAGTCTTGACCCCAAGACCGGCGTCGCAGTCTACAAGCCCAAGTCGTATGAAGTTCTCGTTACTGACGCTGCGAATTCACTTGCCTATGCTCTTGAAGATGGCAAGACCCGCTTGGAGATTGATTTCCCGCCCCTTCCTAGCAACATATCTTCCTATAAGGGGTCTTCAGATGACTTCATTGATGCCAATGTTCAACTCGCCTTGACTGTTGTAAGGAAGCTGAAAGAGAGAAAGGAGATGAAAGTTTGTATTGTGTTTCCGGATAAGCCAGAAAGGCGCAGGGCTTCTGAGATGTTTAAAACAGCTATTGACTCGATTGGTGATCTAACCATAGCTTCCCTCGATGATGTTCCTGGTGGTCCAGTCACCATGTTCTTCAGATCCATAAGGAACACACTTGATTTTGATTTCGAAGATGAAAATGAAGGTCGCTGGGCATCCAATGAGCCTCCTTCTCTTTATATGTTCATTAATTGTAGCACGCGCGAACTTGCTGGAATTGAGAAGTTTGTGGAACAATTTGCCATGTCAACCCCAGCACTTCTATTCAATCTTGAACTCGACACATTGCGTGCTGACTTGGGCCTTGTGGGCTTTCCAACCAAGGATTTGCATTATCGATTTCTTTCACAATTTATTCCAGTGTTCTACATTCGAATAAGAGAGTACTCGAAGACAGTAGCAGTAGCGCCTTATATAGTGAATTACAATGGAGCATTATTTCGCCAATACCCTGGGCCTTGGCAGGTAATGCTCAAACAAGCAGATGGTTCTTTTGCTTGCGTAGCAGAGAGTGCAACACGCTTCACTCTGGGTGAAACGAAAGAAGAACTGTTGAGGGTCTTGGGACTTAAAGAGGAAGAAGGAAGCTCGCTGGAATTTCTTCGTAGAGGCTACAAGTCTGCTACTTGGTGGGAAGAAGATGTTGAGTTGGAATTGTCTTCTGCTTGGCGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

380

Amino Acids

42.73

Weight (kDa)

5.41

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	74 - 336	1.4e-47	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	919
AccI	GTMKAC	2 cut(s)	171, 213
AccII	CGCG	2 cut(s)	667, 669
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	4 cut(s)	64, 99, 292, 311
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	256, 1061
AcuI	CTGAAG	2 cut(s)	333, 544
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	2 cut(s)	200, 342
AgsI	TTSAA	5 cut(s)	183, 278, 377, 733, 740
AjnI	CCWGG	2 cut(s)	535, 916
AluBI	AGCT	6 cut(s)	134, 179, 403, 488, 518, 1053
AluI	AGCT	6 cut(s)	134, 179, 403, 488, 518, 1053
Alw21I	GWGCWC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	558
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	3 cut(s)	3, 766, 920
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	256, 1061
AseI	ATTAAT	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	3 cut(s)	462, 669, 874
AspS9I	GGNCC	3 cut(s)	542, 766, 920
AsuHPI	GGTGA	3 cut(s)	515, 541, 1010
AsuII	TTCGAA	2 cut(s)	594, 838
AvaII	GGWCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	3 cut(s)	339, 863, 1116
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	275, 944
BciT130I	CCWGG	2 cut(s)	537, 918
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	919
BglI	GCCNNNNNGGC	2 cut(s)	457, 774
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	2 cut(s)	537, 918
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	3 cut(s)	542, 766, 920
BmrFI	CCNGG	2 cut(s)	537, 918
BmsI	GCATC	2 cut(s)	355, 629
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	3 cut(s)	339, 863, 1116
Bpu14I	TTCGAA	2 cut(s)	594, 838
Bsa29I	ATCGAT	1 cut(s)	802
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	4 cut(s)	786, 916, 917, 923
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 342
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	545, 824
Bse3DI	GCAATG	2 cut(s)	31, 749
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	537, 918
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	4 cut(s)	786, 916, 917, 923
BseGI	GGATG	1 cut(s)	620
BseLI	CCNNNNNNNGG	2 cut(s)	200, 342
BseMI	GCAATG	2 cut(s)	31, 749
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	545, 824
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	2 cut(s)	615, 718
Bsh1236I	CGCG	2 cut(s)	667, 669
BshFI	GGCC	3 cut(s)	5, 768, 922
BshVI	ATCGAT	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	201, 443
BslFI	GGGAC	1 cut(s)	1044
BslI	CCNNNNNNNGG	2 cut(s)	200, 342
BsmFI	GGGAC	1 cut(s)	1044
BsnI	GGCC	3 cut(s)	5, 768, 922
Bsp119I	TTCGAA	2 cut(s)	594, 838
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	505, 563
BspACI	CCGC	4 cut(s)	64, 99, 292, 311
BspANI	GGCC	3 cut(s)	5, 768, 922
BspCNI	CTCAG	1 cut(s)	463
BspDI	ATCGAT	1 cut(s)	802
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	667, 669
BspMI	ACCTGC	1 cut(s)	919
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	2 cut(s)	594, 838
BsrDI	GCAATG	2 cut(s)	31, 749
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	545, 824
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	786, 916, 917, 923
BssMI	GATC	2 cut(s)	505, 563
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	786, 923
Bst2UI	CCWGG	2 cut(s)	537, 918
Bst4CI	ACNGT	3 cut(s)	391, 862, 1017
Bst6I	CTCTTC	2 cut(s)	19, 82
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	934, 977
BstBI	TTCGAA	2 cut(s)	594, 838
BstC8I	GCNNGC	4 cut(s)	665, 756, 964, 1055
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	620
BstFNI	CGCG	2 cut(s)	667, 669
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	3 cut(s)	462, 669, 874
BstKTI	GATC	2 cut(s)	508, 566
BstMBI	GATC	2 cut(s)	505, 563
BstMWI	GCNNNNNNNGC	6 cut(s)	291, 457, 774, 934, 968, 977
BstNI	CCWGG	2 cut(s)	537, 918
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	535, 916
BstUI	CGCG	2 cut(s)	667, 669
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	3 cut(s)	339, 863, 1116
BstX2I	RGATCY	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	563
Bsu15I	ATCGAT	1 cut(s)	802
BsuRI	GGCC	3 cut(s)	5, 768, 922
BsuTUI	ATCGAT	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	4 cut(s)	665, 756, 964, 1055
CfoI	GCGC	3 cut(s)	462, 669, 874
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	542, 766, 920
ClaI	ATCGAT	1 cut(s)	802
CseI	GACGC	3 cut(s)	157, 193, 257
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	2 cut(s)	553, 709
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	2 cut(s)	507, 565
DpnII	GATC	2 cut(s)	505, 563
DraI	TTTAAA	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	19, 82
EarI	CTCTTC	2 cut(s)	19, 82
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	786, 923
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	333, 544
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	535, 916
EcoT14I	CCWWGG	2 cut(s)	786, 923
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	786, 923
FaeI	CATG	2 cut(s)	556, 712
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	1044
FatI	CATG	2 cut(s)	552, 708
FauI	CCCGC	3 cut(s)	71, 299, 318
FblI	GTMKAC	2 cut(s)	171, 213
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	461, 668, 873
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	2 cut(s)	619, 722
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	3 cut(s)	5, 768, 922
HapII	CCGG	2 cut(s)	201, 443
HgaI	GACGC	3 cut(s)	157, 193, 257
HhaI	GCGC	3 cut(s)	462, 669, 874
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	556, 712
Hin6I	GCGC	3 cut(s)	460, 667, 872
HinP1I	GCGC	3 cut(s)	460, 667, 872
HincII	GTYRAC	2 cut(s)	172, 714
HindII	GTYRAC	2 cut(s)	172, 714
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	2 cut(s)	159, 494
HpaII	CCGG	2 cut(s)	201, 443
HphI	GGTGA	3 cut(s)	515, 541, 1010
Hpy166II	GTNNAC	3 cut(s)	172, 214, 714
Hpy188I	TCNGA	4 cut(s)	131, 352, 472, 563
Hpy188III	TCNNGA	4 cut(s)	188, 275, 443, 737
Hpy8I	GTNNAC	3 cut(s)	172, 214, 714
Hpy99I	CGWCG	2 cut(s)	173, 209
HpyAV	CCTTC	5 cut(s)	16, 326, 602, 645, 1040
HpyCH4III	ACNGT	3 cut(s)	391, 862, 1017
HpyCH4V	TGCA	2 cut(s)	796, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	291, 457, 774, 934, 968, 977
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	556, 712
HspAI	GCGC	3 cut(s)	460, 667, 872
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	505, 563
LmnI	GCTCC	2 cut(s)	41, 896
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	355, 629
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	241, 547
MalI	GATC	2 cut(s)	507, 565
MboI	GATC	2 cut(s)	505, 563
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	9 cut(s)	256, 655, 681, 701, 815, 886, 1061, 1118, 1138
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	806, 1095
MnlI	CCTC	9 cut(s)	22, 60, 81, 127, 533, 642, 1014, 1033, 1067
MroI	TCCGGA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	3 cut(s)	480, 654, 1035
MspI	CCGG	2 cut(s)	201, 443
MspR9I	CCNGG	2 cut(s)	537, 918
MvaI	CCWGG	2 cut(s)	537, 918
MvnI	CGCG	2 cut(s)	667, 669
MwoI	GCNNNNNNNGC	6 cut(s)	291, 457, 774, 934, 968, 977
NdeII	GATC	2 cut(s)	505, 563
NlaIII	CATG	2 cut(s)	556, 712
NmuCI	GTSAC	1 cut(s)	547
NspV	TTCGAA	2 cut(s)	594, 838
PasI	CCCWGGG	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PshAI	GACNNNNGTC	1 cut(s)	203
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	535, 916
PspFI	CCCAGC	2 cut(s)	615, 718
PspGI	CCWGG	2 cut(s)	535, 916
PspPI	GGNCC	3 cut(s)	542, 766, 920
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
SacI	GAGCTC	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	480, 654, 1035
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	505, 563
Sau96I	GGNCC	3 cut(s)	542, 766, 920
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	537, 918
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	119, 136, 181, 405, 490, 520, 613, 933, 1055
SfaNI	GCATC	2 cut(s)	355, 629
SfuI	TTCGAA	2 cut(s)	594, 838
SinI	GGWCC	1 cut(s)	542
Sse9I	AATT	9 cut(s)	256, 655, 681, 701, 815, 886, 1061, 1118, 1138
SsiI	CCGC	4 cut(s)	64, 99, 292, 311
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	535, 916
StyI	CCWWGG	2 cut(s)	786, 923
TaaI	ACNGT	3 cut(s)	391, 862, 1017
TaqI	TCGA	8 cut(s)	171, 497, 525, 594, 744, 802, 838, 854
TasI	AATT	9 cut(s)	256, 655, 681, 701, 815, 886, 1061, 1118, 1138
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	480, 654, 1035
Tru9I	TTAA	3 cut(s)	480, 654, 1035
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	6 cut(s)	246, 349, 437, 615, 621, 640
TspRI	CASTG	1 cut(s)	831
VpaK11BI	GGWCC	1 cut(s)	542
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	2 cut(s)	256, 1061
XmiI	GTMKAC	2 cut(s)	171, 213
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.