Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Reverse (-)

35137165 .. 35137440

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACATCGCTAGAGGAATTTCATAAAGCTAGGAGCCCTATGGTGCAGAATAAATCAACGGTGAATCAAATGTGCAGGTCGGCGACTGATAATCAACTAAAGATCAATGTCGACAGTGCTTTCTTGCTATCTATCACACATGGGGGTATTGGGGGCATTATCAGTGGCCCTCAAGGTAGATTTGTGGCTGCCTTTGCTCATTCTATTCCTGATGTATTATCTGCTAAACAAGTTGAGCTATTAGCTATACGTGAGGGACTTGATCTTGTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

91

Amino Acids

9.79

Weight (kDa)

6.82

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	36 - 90	1.2e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	270
AluBI	AGCT	3 cut(s)	29, 238, 245
AluI	AGCT	3 cut(s)	29, 238, 245
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	11, 30
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	2 cut(s)	65, 94
BshFI	GGCC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	102, 262
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	66
BssMI	GATC	2 cut(s)	102, 262
Bst4CI	ACNGT	2 cut(s)	61, 116
BstBAI	YACGTR	1 cut(s)	251
BstKTI	GATC	2 cut(s)	105, 265
BstMBI	GATC	2 cut(s)	102, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	121, 169
BveI	ACCTGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	6 cut(s)	29, 36, 168, 188, 238, 245
CviKI_1	RGCY	6 cut(s)	29, 36, 168, 188, 238, 245
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	2 cut(s)	104, 264
DpnII	GATC	2 cut(s)	102, 262
Eco24I	GRGCYC	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	143
FaiI	YATR	5 cut(s)	24, 41, 141, 248, 274
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	11, 30
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	61, 116
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	46, 75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	102, 262
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	2 cut(s)	61, 222
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	11, 30
MaeII	ACGT	1 cut(s)	250
MalI	GATC	2 cut(s)	104, 264
MboI	GATC	2 cut(s)	102, 262
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	3 cut(s)	7, 180, 247
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	102, 262
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	102, 262
Sau96I	GGNCC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	31, 80, 178, 240, 247, 253
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	11, 30
TaaI	ACNGT	2 cut(s)	61, 116
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	2 cut(s)	121, 169
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	121, 169
XapI	RAATTY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	11, 30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.