Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Reverse (-)

35039901 .. 35041643

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGGATGGCTGCAGATTCTCAGTTTCATGTTTTAGCTGTTGATGACAGCCTCATAGATCGAAAACTTATTGAAAGGCTTCTCAAGACCTCCTCATATCAAGTTACTACGGTTGATTCTGGTAGTAAGGCTCTAGAGTTTCTGGGTTTGTATGAGGATGACCAAACCAATCCTGACTCACCTTCAGTTTCCCCAAACAATCAACAGGAAGTGGAAGTGAATCTAATTATCACAGACTACTGTATGCCAGGCATGACAGGATATGATTTGCTCAGGAAAATCAAGGAATCTTCTTCACTCAAGAACATACCGGTTGTGATAATGTCATCTGAGAATGTGCCTTCAAGAATAAATAGGTGTTTGGAACAAGGGGCAGAAGAGTTTTTCTTAAAGCCAGTAAGATTGTCAGACTTGAATAGGCTTAGGCCTCATATTATAAAAACCAAGTCCAAGGATCAAAACCAAGAAAAGACAAGGACTCATGAAGAAGAAGAAGCAAGTCAAAAATTGGAAATGTCATCAACAAAAATTCAAAAATTGGAAAGCTCGGAGGTTAAGCAGGAACAACAAGAGCTAGTACATCATCAACTACAATTACAACAATCACAGCCACCAAATAGCAACAAGCGCAAGACCATGGAAGAGGGGCTCTCACCTGATAGAACTAGACCCAGATACAGTGGCATCACCACTGTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

233

Amino Acids

26.52

Weight (kDa)

5.65

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 138	1.6e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AclWI	GGATC	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	579
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	74, 345, 415, 533
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	38, 546, 574
AluI	AGCT	3 cut(s)	38, 546, 574
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	528
AsiGI	ACCGGT	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	630
AsuHPI	GGTGA	3 cut(s)	171, 645, 679
BanII	GRGCYC	1 cut(s)	651
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	3 cut(s)	134, 575, 666
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	693
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
Bpu10I	CCTNAGC	2 cut(s)	272, 422
BpuEI	CTTGAG	2 cut(s)	68, 284
BsaJI	CCNNGG	2 cut(s)	450, 636
BsaWI	WCCGGW	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	450, 636
BseGI	GGATG	2 cut(s)	12, 163
BseMII	CTCAG	3 cut(s)	35, 286, 321
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	311
BsnI	GGCC	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	2 cut(s)	58, 454
Bsp19I	CCATGG	1 cut(s)	636
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	3 cut(s)	34, 285, 322
BspHI	TCATGA	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	450, 636
BssMI	GATC	2 cut(s)	58, 454
BssT1I	CCWWGG	2 cut(s)	450, 636
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	4 cut(s)	112, 242, 680, 694
Bst6I	CTCTTC	2 cut(s)	372, 636
BstDEI	CTNAG	4 cut(s)	21, 272, 330, 422
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	12, 163
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	2 cut(s)	61, 457
BstMBI	GATC	2 cut(s)	58, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	12, 163
BtsIMutI	CAGTG	2 cut(s)	685, 690
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	578
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	4 cut(s)	29, 253, 482, 637
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	4 cut(s)	21, 272, 330, 422
DpnI	GATC	2 cut(s)	60, 456
DpnII	GATC	2 cut(s)	58, 454
Eam1104I	CTCTTC	2 cut(s)	372, 636
EarI	CTCTTC	2 cut(s)	372, 636
Eco130I	CCWWGG	2 cut(s)	450, 636
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	450, 636
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	450, 636
FaeI	CATG	4 cut(s)	32, 256, 485, 640
FatI	CATG	4 cut(s)	28, 252, 481, 636
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	19, 170
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	134, 575, 666
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	32, 256, 485, 640
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	6 cut(s)	17, 116, 176, 220, 287, 478
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	3 cut(s)	171, 645, 679
Hpy188I	TCNGA	3 cut(s)	331, 409, 550
Hpy188III	TCNNGA	7 cut(s)	85, 134, 173, 274, 301, 345, 482
HpyAV	CCTTC	2 cut(s)	192, 351
HpyCH4III	ACNGT	4 cut(s)	112, 242, 680, 694
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	4 cut(s)	21, 272, 330, 422
Hsp92II	CATG	4 cut(s)	32, 256, 485, 640
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	58, 454
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	3 cut(s)	134, 575, 666
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	60, 456
MboI	GATC	2 cut(s)	58, 454
MboII	GAAGA	7 cut(s)	282, 285, 389, 497, 500, 503, 653
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	5 cut(s)	225, 506, 528, 536, 593
MlyI	GAGTC	2 cut(s)	170, 472
MnlI	CCTC	7 cut(s)	62, 100, 103, 148, 438, 544, 637
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	389, 555
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	2 cut(s)	58, 454
NlaIII	CATG	4 cut(s)	32, 256, 485, 640
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	17, 116, 220, 287
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	170, 472
PpsI	GAGTC	2 cut(s)	170, 472
PsiI	TTATAA	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	389, 555
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	58, 454
SchI	GAGTC	2 cut(s)	170, 472
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	8 cut(s)	40, 92, 184, 359, 548, 555, 576, 658
SfaNI	GCATC	1 cut(s)	693
SfcI	CTRYAG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	83, 299
SmoI	CTYRAG	2 cut(s)	83, 299
Sse9I	AATT	5 cut(s)	225, 506, 528, 536, 593
SseBI	AGGCCT	1 cut(s)	427
SspMI	CTAG	3 cut(s)	134, 575, 666
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	450, 636
TaaI	ACNGT	4 cut(s)	112, 242, 680, 694
TaqI	TCGA	1 cut(s)	61
TasI	AATT	5 cut(s)	225, 506, 528, 536, 593
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	4 cut(s)	17, 116, 220, 287
Tru1I	TTAA	2 cut(s)	389, 555
Tru9I	TTAA	2 cut(s)	389, 555
TscAI	CASTG	2 cut(s)	685, 697
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	17, 498
TspRI	CASTG	2 cut(s)	685, 697
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	3 cut(s)	134, 575, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.