Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008650

Physical Location & Seq

Genomic Coordinates Forward (+)

7591754 .. 7599539

Gene Structure 7786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G098800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCCATGCCCACCATGGCCTTCTCATCGTCACCTTCCATTCTCTCTCTACATTGCGCAACTCACCACCCTCTTGTTCGTTCCCACACTTCTCTCTCTTCATTACCCAAAATTGCTACTGCCCTCTTCAGCTTCTCAACTTTTCAAACGCTTCCAAAATTCCCGTTGAATAGTAACAAAAGAATCCAATGCACTGAAAAAGGCTCTTCAGCTTCAAGTCTTGATCCCAAGTCCGGAGTTTCAGTCTACAAGCCCAAGTCCTATGAAGTTCTTGTCGCTGATGCTGCAAAATCGCTTGCTTATGCTCTTGAAGATGGAAAGACCCGCTTGGAGATTGATTTTCCACCCCTGCCTAGCAACATATCTTCTTATAAGGGGTCTTCAGATGACTTCATTGATGCCAACGTACAACTGGCCTTGGCTGTTGTAAGGAAGCTCAAAGAAAAAAGGGAAACGAGAGCTTGCATTGTGTTTCCTGATAAGCCAGAAAAGCGCAGGGCCTCTGAGCTGTTTAAAACAGCTATTGACACGCTCGATGACATAACCATAGGTTCCCTGGATGATGTCCCTGGTGGTCCAGTAACCAACTTCTTCAGATCTATAAGGAACACACTTGATTTTGACTTTGAAGATGAAAATGAAGGTCGTTGGGCATCCAATGAGCCTCCCTCTCTTTATGTATTCATTAATTGTAGCACCCGTGACCTTGCTTCAATAGAGAAGTACGTGGAAACATTTGCCATGTCAACCCCGACACTTCTATTTAATCTTGAACTCGACACATTGCGTGCTGACTTGGGCCTTGTGGGCTTTCCAACCAAAGATTTGCACTATCGCTTTCTTTGTCAATTTATTCCAGTGTTCTATATCCGAATAAGAGAGTACTCAAAGACAGTAGCAGTAGCACCTTATATAGTGAATTACAATGGAGCATTGTTTCGCCAATACCCTGGGCCTTGGCAGGTAATGCTTAAACAAGCCGATGGTTCTTTTGCTTGCGTAGCAGAGAGTGCAACACGCTTCACTCTGGGTGAAACAAAAGAAGAACTGTTGAGGGTCCTGGGACTGCAAGAGGAACAAGGAAGCTCGCTGCAATTTCTTCGTAGAGGCTACAGGAGCGCTACTTGGTGGGAAGAAGATGTTGAGTTGGAAGTATCTTCTGCTTGGCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

392

Amino Acids

43.89

Weight (kDa)

5.87

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73060
fragaria_vesca	FvH4_6g28580
malus_domestica	MD10G1047600.v1.1
prunus_persica	Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1 Prupe.3G098800_v2.0.a1
pyrus_communis	pycom10g03370
rosa_chinensis	RchiOBHm_Chr2g0132911
rosa_laevigata	RLG00000019290
rosa_multiflora	Rmu_sc0001314.1_g000003 Rmu_sc0016946.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111630
rosa_rugosa	Rorug02G0308200 Rorug02G0308300 Rorug02G0308400 Rorug02G0308500
rosa_samantha	Rh2AG360800 Rh2BG366700 Rh2CG344000 Rh2DG383700
rosa_wichuraiana	Rw2G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	952
AccI	GTMKAC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	4 cut(s)	112, 192, 366, 577
AfaI	GTAC	3 cut(s)	408, 725, 884
AfeI	AGCGCT	1 cut(s)	1120
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	7 cut(s)	146, 169, 216, 311, 629, 714, 773
AjnI	CCWGG	4 cut(s)	555, 568, 949, 1059
AluBI	AGCT	7 cut(s)	132, 212, 436, 461, 508, 521, 1086
AluI	AGCT	7 cut(s)	132, 212, 436, 461, 508, 521, 1086
AlwI	GGATC	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	1120
AoxI	GGCC	6 cut(s)	3, 18, 414, 498, 799, 953
ApeKI	GCWGC	2 cut(s)	284, 1090
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	687
AspLEI	GCGC	3 cut(s)	59, 495, 1121
AspS9I	GGNCC	5 cut(s)	498, 575, 799, 953, 1057
AsuHPI	GGTGA	3 cut(s)	24, 56, 1043
AvaII	GGWCC	2 cut(s)	575, 1057
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	271, 1077
BccI	CCATC	2 cut(s)	308, 977
BcgI	CGANNNNNNTGC	2 cut(s)	1082, 1116
BciT130I	CCWGG	4 cut(s)	557, 570, 951, 1061
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	1111
BfoI	RGCGCY	1 cut(s)	1122
BfuAI	ACCTGC	1 cut(s)	952
BglI	GCCNNNNNGGC	1 cut(s)	807
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	2 cut(s)	285, 1091
BlsI	GCNGC	2 cut(s)	286, 1092
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	4 cut(s)	557, 570, 951, 1061
Bme18I	GGWCC	2 cut(s)	575, 1057
BmgT120I	GGNCC	5 cut(s)	498, 575, 799, 953, 1057
BmiI	GGNNCC	2 cut(s)	553, 1058
BmrFI	CCNGG	4 cut(s)	557, 570, 951, 1061
BmsI	GCATC	3 cut(s)	271, 388, 662
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BsaAI	YACGTR	1 cut(s)	727
BsaJI	CCNNGG	8 cut(s)	15, 417, 555, 568, 949, 950, 956, 1060
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	417, 578, 857
Bse3DI	GCAATG	2 cut(s)	52, 782
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	4 cut(s)	557, 570, 951, 1061
BseDI	CCNNGG	8 cut(s)	15, 417, 555, 568, 949, 950, 956, 1060
BseGI	GGATG	2 cut(s)	565, 653
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	2 cut(s)	52, 782
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	3 cut(s)	417, 578, 857
BseXI	GCAGC	2 cut(s)	271, 1077
BshFI	GGCC	6 cut(s)	5, 20, 416, 500, 801, 955
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	551, 1077
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	551, 1077
BsnI	GGCC	6 cut(s)	5, 20, 416, 500, 801, 955
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	223, 596
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	6 cut(s)	5, 20, 416, 500, 801, 955
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	553, 1058
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	52, 782
BsrI	ACTGG	3 cut(s)	417, 578, 857
BssECI	CCNNGG	8 cut(s)	15, 417, 555, 568, 949, 950, 956, 1060
BssMI	GATC	2 cut(s)	223, 596
BssT1I	CCWWGG	3 cut(s)	15, 417, 956
Bst2UI	CCWGG	4 cut(s)	557, 570, 951, 1061
Bst4CI	ACNGT	2 cut(s)	895, 1050
Bst6I	CTCTTC	3 cut(s)	103, 131, 211
BstAPI	GCANNNNNTGC	2 cut(s)	967, 1010
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	5 cut(s)	297, 463, 789, 997, 1088
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	565, 653
BstH2I	RGCGCY	1 cut(s)	1122
BstHHI	GCGC	3 cut(s)	59, 495, 1121
BstKTI	GATC	2 cut(s)	226, 599
BstMBI	GATC	2 cut(s)	223, 596
BstMWI	GCNNNNNNNGC	7 cut(s)	284, 490, 807, 967, 1001, 1010, 1116
BstNI	CCWGG	4 cut(s)	557, 570, 951, 1061
BstSCI	CCNGG	4 cut(s)	555, 568, 949, 1059
BstSFI	CTRYAG	1 cut(s)	1111
BstV1I	GCAGC	2 cut(s)	271, 1077
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	596
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	6 cut(s)	5, 20, 416, 500, 801, 955
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	565, 653
BtsIMutI	CAGTG	2 cut(s)	192, 864
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	5 cut(s)	297, 463, 789, 997, 1088
CfoI	GCGC	3 cut(s)	59, 495, 1121
Cfr13I	GGNCC	5 cut(s)	498, 575, 799, 953, 1057
Csp6I	GTAC	3 cut(s)	407, 724, 883
CviAII	CATG	3 cut(s)	7, 16, 742
CviQI	GTAC	3 cut(s)	407, 724, 883
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	2 cut(s)	225, 598
DpnII	GATC	2 cut(s)	223, 596
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	103, 131, 211
EarI	CTCTTC	3 cut(s)	103, 131, 211
Eco130I	CCWWGG	3 cut(s)	15, 417, 956
Eco47I	GGWCC	2 cut(s)	575, 1057
Eco47III	AGCGCT	1 cut(s)	1120
Eco57I	CTGAAG	4 cut(s)	112, 192, 366, 577
EcoO109I	RGGNCCY	2 cut(s)	498, 1057
EcoRII	CCWGG	4 cut(s)	555, 568, 949, 1059
EcoT14I	CCWWGG	3 cut(s)	15, 417, 956
ErhI	CCWWGG	3 cut(s)	15, 417, 956
FaeI	CATG	3 cut(s)	10, 19, 745
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	551, 1077
FatI	CATG	3 cut(s)	6, 15, 741
FauI	CCCGC	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	285, 1091
FokI	GGATG	2 cut(s)	572, 640
Fsp4HI	GCNGC	2 cut(s)	285, 1091
FspBI	CTAG	1 cut(s)	354
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	3 cut(s)	58, 494, 1120
GluI	GCNGC	2 cut(s)	285, 1091
HaeII	RGCGCY	1 cut(s)	1122
HaeIII	GGCC	6 cut(s)	5, 20, 416, 500, 801, 955
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	3 cut(s)	59, 495, 1121
Hin1II	CATG	3 cut(s)	10, 19, 745
Hin6I	GCGC	3 cut(s)	57, 493, 1119
HinP1I	GCGC	3 cut(s)	57, 493, 1119
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	24, 56, 1043
Hpy166II	GTNNAC	2 cut(s)	247, 747
Hpy188I	TCNGA	4 cut(s)	385, 505, 596, 872
Hpy188III	TCNNGA	5 cut(s)	221, 234, 308, 476, 770
Hpy8I	GTNNAC	2 cut(s)	247, 747
HpyAV	CCTTC	3 cut(s)	31, 45, 635
HpyCH4III	ACNGT	2 cut(s)	895, 1050
HpyCH4IV	ACGT	2 cut(s)	405, 726
HpyCH4V	TGCA	7 cut(s)	192, 287, 465, 829, 1013, 1069, 1093
HpyF10VI	GCNNNNNNNGC	7 cut(s)	284, 490, 807, 967, 1001, 1010, 1116
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	2 cut(s)	405, 726
Hsp92II	CATG	3 cut(s)	10, 19, 745
HspAI	GCGC	3 cut(s)	57, 493, 1119
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	223, 596
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	929, 1116
Lsp1109I	GCAGC	2 cut(s)	271, 1077
LweI	GCATC	3 cut(s)	271, 388, 662
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	405, 726
MaeIII	GTNAC	4 cut(s)	30, 173, 580, 701
MalI	GATC	2 cut(s)	225, 598
MboI	GATC	2 cut(s)	223, 596
MflI	RGATCY	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	111, 158, 688, 848, 919, 1094, 1171
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	839, 1128
MnlI	CCTC	8 cut(s)	81, 134, 511, 675, 679, 1047, 1066, 1100
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	513, 687, 765, 972
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	4 cut(s)	557, 570, 951, 1061
MvaI	CCWGG	4 cut(s)	557, 570, 951, 1061
MwoI	GCNNNNNNNGC	7 cut(s)	284, 490, 807, 967, 1001, 1010, 1116
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	223, 596
NlaIII	CATG	3 cut(s)	10, 19, 745
NlaIV	GGNNCC	2 cut(s)	553, 1058
NmuCI	GTSAC	2 cut(s)	30, 701
NsbI	TGCGCA	1 cut(s)	58
PasI	CCCWGGG	1 cut(s)	950
PciSI	GCTCTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	286, 1092
Ppu21I	YACGTR	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	1057
PshBI	ATTAAT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	1057
Psp6I	CCWGG	4 cut(s)	555, 568, 949, 1059
PspGI	CCWGG	4 cut(s)	555, 568, 949, 1059
PspN4I	GGNNCC	2 cut(s)	553, 1058
PspPI	GGNCC	5 cut(s)	498, 575, 799, 953, 1057
PspPPI	RGGWCCY	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	3 cut(s)	408, 725, 884
RsaNI	GTAC	3 cut(s)	407, 724, 883
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	4 cut(s)	513, 687, 765, 972
SatI	GCNGC	2 cut(s)	285, 1091
Sau3AI	GATC	2 cut(s)	223, 596
Sau96I	GGNCC	5 cut(s)	498, 575, 799, 953, 1057
ScaI	AGTACT	1 cut(s)	884
ScrFI	CCNGG	4 cut(s)	557, 570, 951, 1061
SfaNI	GCATC	3 cut(s)	271, 388, 662
SfcI	CTRYAG	1 cut(s)	1111
SinI	GGWCC	2 cut(s)	575, 1057
Sse9I	AATT	7 cut(s)	111, 158, 688, 848, 919, 1094, 1171
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	555, 568, 949, 1059
StyI	CCWWGG	3 cut(s)	15, 417, 956
TaaI	ACNGT	2 cut(s)	895, 1050
TaiI	ACGT	2 cut(s)	408, 729
TaqI	TCGA	2 cut(s)	534, 777
TasI	AATT	7 cut(s)	111, 158, 688, 848, 919, 1094, 1171
TatI	WGTACW	1 cut(s)	882
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	4 cut(s)	513, 687, 765, 972
Tru9I	TTAA	4 cut(s)	513, 687, 765, 972
TscAI	CASTG	2 cut(s)	199, 864
TseFI	GTSAC	2 cut(s)	30, 701
TseI	GCWGC	2 cut(s)	284, 1090
Tsp45I	GTSAC	2 cut(s)	30, 701
TspDTI	ATGAA	6 cut(s)	90, 279, 382, 648, 654, 673
TspRI	CASTG	2 cut(s)	199, 864
VpaK11BI	GGWCC	2 cut(s)	575, 1057
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	3 cut(s)	13, 409, 553
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.