Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Forward (+)

23710373 .. 23711213

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30612.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTATGTCAACCATCTGCGCTTGCGTCGCCGACATGGTGATGGCCACCGTGAAGAAGAGAAAGCTGGATCTGGGAATAGATTAAACTGGACTGGAAAAGAAGATTCTGACCCGTCGGTGATTAACGGCGGTGTAAAGCCGAACAGTGTGTTGTTGGACTTGGATTTAAAAGCTAAAATTGGGGATTTCAGCTGGCAGAGATTCGAAACAGACGATGAGGTGGATCGAGAAAGTCAAATGGTGGTGGTAGAAGAAGAAGATAAGGGAGAGATCGAGAAAGAAGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

4.77

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	76, 231
AcoI	YGGCCR	1 cut(s)	43
AluBI	AGCT	3 cut(s)	65, 173, 192
AluI	AGCT	3 cut(s)	65, 173, 192
AlwI	GGATC	2 cut(s)	76, 231
AoxI	GGCC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	50, 130
AsuII	TTCGAA	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	45
BccI	CCATC	2 cut(s)	21, 35
BceAI	ACGGC	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	92, 97
BseNI	ACTGG	2 cut(s)	92, 97
BshFI	GGCC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	68, 223, 270
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	76, 231
BspT104I	TTCGAA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	92, 97
BssMI	GATC	3 cut(s)	68, 223, 270
Bst4CI	ACNGT	2 cut(s)	50, 146
Bst6I	CTCTTC	2 cut(s)	51, 276
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	23, 194
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	71, 226, 273
BstMBI	GATC	3 cut(s)	68, 223, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	23, 194
CfoI	GCGC	1 cut(s)	21
CseI	GACGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	45, 65, 139, 173, 192
CviKI_1	RGCY	5 cut(s)	45, 65, 139, 173, 192
DpnI	GATC	3 cut(s)	70, 225, 272
DpnII	GATC	3 cut(s)	68, 223, 270
DraI	TTTAAA	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	51, 276
EarI	CTCTTC	2 cut(s)	51, 276
FaeI	CATG	1 cut(s)	38
FaiI	YATR	2 cut(s)	6, 36
FatI	CATG	1 cut(s)	34
GlaI	GCGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	45
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	104, 201, 284
HphI	GGTGA	2 cut(s)	50, 130
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	227, 274, 288
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	30, 118
HpyCH4III	ACNGT	2 cut(s)	50, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	68, 223, 270
LpnPI	CCDG	5 cut(s)	51, 57, 73, 78, 178
MalI	GATC	3 cut(s)	70, 225, 272
MboI	GATC	3 cut(s)	68, 223, 270
MboII	GAAGA	6 cut(s)	65, 68, 113, 263, 266, 269
MflI	RGATCY	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	3 cut(s)	83, 123, 167
MslI	CAYNNNNRTG	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	3 cut(s)	68, 223, 270
NlaIII	CATG	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	104, 201
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	83, 123, 167
Sau3AI	GATC	3 cut(s)	68, 223, 270
SetI	ASST	4 cut(s)	67, 175, 194, 222
SfuI	TTCGAA	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	50, 146
TaqI	TCGA	3 cut(s)	204, 226, 273
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	104, 201
Tru1I	TTAA	3 cut(s)	83, 123, 167
Tru9I	TTAA	3 cut(s)	83, 123, 167
TscAI	CASTG	1 cut(s)	151
TspRI	CASTG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.