Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002131.1

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Reverse (-)

50322 .. 50627

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002131.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgattcacggcaacaagaagcctagcaatgtgctactggactcagatttcaatgccaagattggggattttgggcttgcgaggttggaaacagagggcgaggtggatcagggagatcaagtggtggtggtggaggaagaagatgagggggccgggagagagagagagaaaaaaaagattcttgaagtggttgtggtcgttggggatgataatgtttcgatcttggaagaggagagcatgagtttgagtatggtgactggtggattggaagatggccagtcgtcggatgagtttgagataatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

101

Amino Acids

10.99

Weight (kDa)

4.1

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	63, 283
AgsI	TTSAA	2 cut(s)	52, 185
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	150, 274
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	276
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	154
BfaI	CTAG	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 283
Bse1I	ACTGG	3 cut(s)	42, 262, 277
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	211, 292
BseLI	CCNNNNNNNGG	2 cut(s)	63, 283
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	42, 262, 277
BseRI	GAGGAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	152, 276
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	63, 283
BsnI	GGCC	2 cut(s)	152, 276
Bsp143I	GATC	3 cut(s)	106, 115, 219
BspANI	GGCC	2 cut(s)	152, 276
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	42, 262, 277
BssMI	GATC	3 cut(s)	106, 115, 219
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	211, 292
BstKTI	GATC	3 cut(s)	109, 118, 222
BstMBI	GATC	3 cut(s)	106, 115, 219
BstSCI	CCNGG	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	152, 276
BtsCI	GGATG	2 cut(s)	211, 292
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	150
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	4 cut(s)	22, 76, 152, 276
CviKI_1	RGCY	4 cut(s)	22, 76, 152, 276
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	3 cut(s)	108, 117, 221
DpnII	GATC	3 cut(s)	106, 115, 219
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
FaeI	CATG	1 cut(s)	241
FaiI	YATR	2 cut(s)	239, 251
FatI	CATG	1 cut(s)	237
FokI	GGATG	2 cut(s)	218, 299
FspBI	CTAG	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	152, 276
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	3 cut(s)	4, 41, 178
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	46, 286
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	106, 115, 219
LpnPI	CCDG	5 cut(s)	23, 95, 166, 243, 290
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	108, 117, 221
MboI	GATC	3 cut(s)	106, 115, 219
MboII	GAAGA	4 cut(s)	149, 152, 239, 281
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	1 cut(s)	300
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	66, 264
MnlI	CCTC	6 cut(s)	75, 88, 94, 127, 139, 223
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	3 cut(s)	106, 115, 219
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	4, 178
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	106, 115, 219
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	2 cut(s)	86, 105
Sse9I	AATT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	218
TasI	AATT	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	4, 178
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.