Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Reverse (-)

18483080 .. 18483352

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG216300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATTCACGGCGACGTGAAGCCCAGCAATGTGCTACTGGACTCAGATTACAATGCCAAGATTGGGGATTTCGGGCCTGCGAGGTTGGAAACAGAGGGCGAGTTGGATCAGGGAGATCAAGTGGTGGTGGTGGAGGAAGAAGATAAGGGAGAGACAAAGAAAAAAAAGATTATTGAAGTGGTTGTGGTCGTTGGGGATGATAATGTTTCGATCTTGGAAGAGGAGAGCATGAGTTTGAGTTGGTGGATTGGAAGATGGCCGGTCGCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

4.28

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 34	8.8e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	63, 266
AgsI	TTSAA	1 cut(s)	176
AjiI	CACGTC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	74, 257
AspS9I	GGNCC	1 cut(s)	74
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 266
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	63, 266
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	76, 259
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	260, 267
BslI	CCNNNNNNNGG	2 cut(s)	63, 266
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	76, 259
Bsp143I	GATC	3 cut(s)	106, 115, 210
BspANI	GGCC	2 cut(s)	76, 259
BspCNI	CTCAG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	259
BssMI	GATC	3 cut(s)	106, 115, 210
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	109, 118, 213
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	106, 115, 210
BstMCI	CGRYCG	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	76, 259
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	3 cut(s)	22, 76, 259
CviKI_1	RGCY	3 cut(s)	22, 76, 259
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	3 cut(s)	108, 117, 212
DpnII	GATC	3 cut(s)	106, 115, 210
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
FaeI	CATG	1 cut(s)	232
FaiI	YATR	1 cut(s)	230
FatI	CATG	1 cut(s)	228
FokI	GGATG	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	76, 259
HapII	CCGG	2 cut(s)	260, 267
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	4, 41
HpaII	CCGG	2 cut(s)	260, 267
Hpy188I	TCNGA	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	106, 115, 210
LpnPI	CCDG	4 cut(s)	23, 37, 90, 95
MaeII	ACGT	1 cut(s)	15
MalI	GATC	3 cut(s)	108, 117, 212
MboI	GATC	3 cut(s)	106, 115, 210
MboII	GAAGA	4 cut(s)	149, 152, 230, 264
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	66, 84
MnlI	CCTC	4 cut(s)	75, 88, 127, 214
MspI	CCGG	2 cut(s)	260, 267
NdeII	GATC	3 cut(s)	106, 115, 210
NlaIII	CATG	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	74
Sau3AI	GATC	3 cut(s)	106, 115, 210
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	35
SetI	ASST	2 cut(s)	18, 86
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.